These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10981#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1005 fasta sequence [GCGGCCAAAAATTCGGCACGAGGTCTCAGCATTGATTGAGTCCCGTCTGACGTTCTGTTCGTCAAATAACTGTTGTCATGAATATATTCCGGTTTCTTGGTGATGCTTCACATTTTGCAGCTATTATAATTTTAGTACTGAAGATTTGGAAAACACGATCTTGTGCAGGTCTGTCAGGACGTAGTCAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTTATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACATTGTATTTAA-TATATTTTAGATTCAAGGCTACATATGATGGGAATCATGACACGTTCCGGCTGGAGTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTT-CCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGAC--TTTTTTTACTTGTACATAACCAGAGTTATCAAGGGTAAAGCTTTTGCTCTTCCGGCGTAGTAATGTGATCAAATGAATAATGCGTCCCGACTCACGTTAATACAATAGCACGAACTCCGATTCCTTTTTACTTGTTTCTCCTGTCGGATCTGGGAAGCTCCAAAGTACTGTTTAATCGAGGACTCCATTTGTGTTCACTTTATCGGTGATAAACAAAATACAGCTGATCGTTTTTCTTATGCGCTCTCGTTATTCTAGCATGTACTTTACATCTGAATAATATCAGAAAGTTTTTCTGGCTTTCCTGGGATTTATTTTTAATAAACTTTTATCTCCGCCACCAACCGGG] [+] EMBL CD077500 [GCGGCCAAAAATTCGGCACGAGGTCTCAGCATTGATTGAGTCCCGTCTGACGTTCTGTTCGTCAAATAACTGTTGTCATGAATATATTCCGGTTTCTTGGTGATGCTTCACATTTTGCAGCTATTATAATTTTAGTACTGAAGATTTGGAAAACACGATCTTGTGCAGGTCTGTCAGGACGTAGTCAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTTATGTGTCTCTATACAATTCGCTTGC AAGATCATCTTCATA ] [+] EMBL AI976351 [ GTCTGACGTTCTGTTCGTCAAATAACTGTTGTCATGAATATATTCCGGTTTCTTGGTGATGCTTCACATTTTGCAGCTATTATAATTTTAGTACTGAAGATTTGGAAAACACGATCTTGTGCAGGTCTGTCAGGACGTAGTCAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTTATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACATTGTATTTAA TATATTTTAGATTCAAGGCTACATATGATGGGAATCATGACACGTTCCGGCTGGAGTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTT CCTTATTAGCANAACTGGAGAAGCAGANACCATCACTTCTCACTATC ] [+] EMBL AI068071 [ ACGTTCTGTTCGTCAAATAACTGTTGTCATGAATATATTCCGGTTTCTTGGTGATGCTTCACATTTTGCAGCTATTATAATTTTAGTACTGAAGATTTGGAAAACACGATCTTGTGCAGGTCTGTCAGGACGTAGTCAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTTATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACATTGTATTTAA TATATTTTAGATTCAAGGCTACATATGATGGGAATCATGACACGTTCCGGCTGGAGTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAG ] [+] EMBL AI067862 [ TGTTCGTCAAATAACTGTTGTCATGAATATATTCCGGTTTCTTGGTGATGCTTCACATTTTGCAGCTATTATAATTTTAGTACTGAAGATTTGGAAAACACGATCTTGTGCAGGTCTGTCAGGACGTAGTCAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTTATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACATTGTATTTAA TATATTTTAGATTCAAGGCTACATATGATGGGAATCATGACACGTTCCGGCTGGAGTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAG ] [+] EMBL AI067280 [ TGTTCGTCAAATAACTGTTGTCATGAATATATTCCGGTTTCTTGGTGATGCTTCACATTTTGCAGCTATTATAATTTTAGTACTGAAGATTTGGAAAACACGATCTTGTGCAGGTCTGTCAGGACGTAGTCAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTTATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACATTGTATTTAA TATATTTTAGATTCAAGGCTACATATGATGGGAATCATGACACGTTCCGGCTGGAGTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTG ] [+] EMBL AI067039 [ TGTTCGTCAAATAACTGTTGTCATGAATATATTCCGGTTTCTTGGTGATGCTTCACATTTTGCAGCTATTATAATTTTAGTACTGAAGATTTGGAAAACACGATCTTGTGCAGGTCTGTCAGGACGTAGTCAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTTATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACATTGTATTTAATTATA TTTAGATTCAAAGCTACATATGATGG ] [+] EMBL AI068305 [ TGTTCGTCAAATAACTGTTGTCATGAATATATTCCGGTTTCTTGGTGATGCTTCACATTTTGCAGCTATTATAATTTTAGTACTGAAGATTTGGAAAACACGATCTTGTGCAGGTCTGTCAGGACGTAGTCAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTTATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACATTGTATTTAA TATATTTTAGATTCAAGGCTACATATGATGGGAATCATGACACGTTCCGGCTGGAGTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGA CTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTT CCTTATTAGCA ] [+] EMBL AI067354 [ TGTTCGTCAAATAACTGTTGTCATGAATATATTCCGGTTTCTTGGTGATGCTTCACATTTTGCAGCTATTATAATTTTAGTACTGAAGATTTGGAAAACACGATCTTGTGCAGGTCTGTCAGGACGTAGTCAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTTATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACATTGTATTTAA TATATTTTAGATTCAAGGCTACATATGATGGGAATCATGACACGTTCCGGCTGGAGTTCCTTCATGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATATGGAATCAGTTGCCATCCTGCCTCAGTTGTTCCCTTA TAGCA ] [+] EMBL AI067057 [ TGTTCGTCAAATAACTGTTGTCATGAATATATTCCGGTTTCTTGGTGATGCTTCACATTTTGCAGCTATTATAATTTTAGTACTGAAGATTTGGAAAACACGATCTTGTGCAGGTCTGTCAGGACGTAGTCAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTTATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACATTGTATTTAA TATATTTTAGATTCAAGGCTACATATGATGGGAATCATGACACGTTCCGGCTGGAGTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTT ] [-] EMBL CD067269 [ TATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACATTGTATTTAA TATATTTTAGATTCAAGGCTACATATGATGGGAATCATGACACGTTCCGGCTGGAGTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTT CCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGAGGGTGTGTTGCAAACTTTGCTATATTGCGACTTTTTTTTTACTTGTACATAACCAGAGTTATCAAGGGTAAAGCTTTTGCTCTTCCGGCGTAGTAATGTGATCAAATGAATAATGCGTCCCGACTCACGTTAATACAATAGCACGAACTCCGATTCCTTTTT ] [+] EMBL CD115722 [ GTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTT CCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGAC TTTTTTTACTTGTACATAACCAGAGTTATCAAGGGTAAAGCTTTTGCTCTTCCGGCGTAGTAATGTGATCAAATGAATAATGCGTCCCGACTCACGTTAATACAATAGCACGAACTCCGATTCCTTTTTACTTGTTTCTCCTGTCGGATCTGGGAAGCTCCAAAGTACTGTTTAATCGAGGACTCCATTTGTGTTCACTTTATTCGTGATAAACAAAATACAGCTGATCGTTTTTTCTATGCGCTCTCGTTATTCTACCATGTACTTTACATCTGAATAATATCAGAAAGTTTTTCTGGCTTTCCTGGGATTTATTTTTAATAAACTTTTATCTCCGCCACCAACCGGG] [+] EMBL CD153931 [ GTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTT CCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGAC TTTTTTTACTTGTACATAACCAGAGTTATCAAGGGTAAAGCTTTTGCTCTTCCGGCGTAGTAATGTGATCAAATGAATAATGCGTCCCGACTCACGTTAATACAATAGCACGAACTCCGATTCCTTTTTACTTGTTTCTCCTGTCGGATCTGGGAAGCTCCAAAGTACTGTTTAATCGAGGACTCCATTTGTGTTCACTTTATCGGTGATAAACAAAATACAGCTGATCGTTNTTCTTATGCGCTCTCGTTATTCTAGCATG ] [+] EMBL CD153762 [ GTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTT CCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGCTGTGTTGCAAACTTTGCTATATTGCGAC TTTTCTTACTTGTACATAACCAGAGTTATCAAGGGTAAAGCTTTTGCTCTTCCGGCGTAGTAATGTGATCAAATGAATAATGCGTCCCGACTCACGTTAATACAATAGCACGAACTCTGATTCCTTTNTACTTGTTTCTCCTGTCGGATCTGGGAAGCTCC ] [+] EMBL CD191882 [ GTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTT CCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGAC TTTTTTTACTTGTACATAACCAGAGTTATCAAGGGTAAAGCTTTTGCTCTTCCGGCGTAGTAATGTGATCAAATGAATAATGCGTCCCGACTCACGTTAATACAATAGCACGAACTCCGATTCCTTTTTACTTGTTTCTCCTGTCGGATCTGGGAAGCTCCAAAGTACTGTTTA ] [-] EMBL CD076258 [ CTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTT CCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGAC TTTTTTTACTTGTACATAACCAGAGTTATCAAGGGTAAAGCTTTTGCTCTTCCGGCGTAGTAATGTGATCAAATGAATAATGCGTCCCGACTCACGTTAATACAATAGCACGAACTCCGATTCCTTTTTACTTGTTTCTCCTGTCGGATCTGGGAAGCTCCAAAGTACTGTTTAATCGAGGACTCCATTTGTGTTCACTTTATCGGTGATAAACAAAATACAGCTGATCGTTTTTCTTATGCGCTCTCGTTATTCTAGCATGTACTTTACATCTGAATAATATCAGAAAGTTTTTC ] [+] EMBL CD199350 [ TGCCATCCTGCCTCAGTTGTT CCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTCTTACCGTGGCCTGTACATACTCAGCTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGAC TTTTTTTACTTGTACATAACCAG AGGGTANAGCTTTTGCTCTTCCGGCGTAGTAATGTGATCAAATGAATGATGCGACCCGngctg ] consensusID : consensus_10981#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 848 fasta sequence [CCCTCG-AGCCAANAATTCGGCACGAGGCGTTCCGGCTGGAGTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTTCCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGACTTTTTTTACTTGTACATAACCAGAGCAGCTCGCTTGTGGTAGAAATCCTTTCCCATCTAAACGATATCAGGTCACGAACTGGTCGACAGTTGGATGCTACCACTGAATACGAATTTTGAACAAGCCTTCCTGAAACCGTGTGTCCCGTCCAAACTAACCTGTTTAGTTAGGTTATGATAGTACCATGTTATGAAAGTTGTGCAGGATTAATGTCTGTCGGTTCTTTACGACTCCCTGGATGAGGTCATAGAGTACAACATAATTGGCTTGATATGTCACCAGATACGACTCATAACTGTAATTTCTTTTACTTTCTTCATATAAGTGAAAAGAACTTTTTGAACTGAGAGAATTTTTTTGGATGTATTTTTTCTTAACAGAACTGCCCTT-NCCACAATTCTTTGCTCTATTTACTTATTGGTTTTTTTTCTTTAATATACTCATCTNCCTTCGTTATATCTTTAC-ACCTGACTTTTTTTGTGTGTGTCCTT-TGTACC-CATGTGTCAAT-AACAATAC] [+] EMBL CD080240 [CCCTCG AGCCAANAATTCGGCACGAGGCGTTCCGGCTGGAGTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTTCCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGACTTTTTTTACTTGTACATAACCAGAGCAGCTCGCTTGTGGTAGAAATCCTTTCCCATCTAAACGATATCAGGTCACGAACTGGTCGACAGTTGGATGCTACCACTGAATACGAATTTTGAACAAGCCTTCCTGAAACCGTGTGTCCCGTCCAAACTAACCTGTTTAGTTAGGTTATGATAGTACCATGTTATGAAAGTTGTGCAGGATTAATGTCTGTCGGTTCTTTACGACTCCCTGGATGAGGTCATAGAGTACAACATAATTGGCTTGATATGTCACCAGATACGACTCATAACTGTAATTTCTTTTACTTTCTTCATATAAGTGAAAAGAACTTTTTGAACTGAGAGAATTTTTTTGGATGTATTTTTTCTTAACAGAACTGCCCTT NCCACAATTCTTTGCTCTATTTACTTATTGGTTTTTTTTCTTTAATATACTCATCTNCCTTCGTTATATCTTTAC ACCTGACTTTTTTTGTGTGTGTCCTT TGTACC CATGTGTCAAT AACAATA ] [+] EMBL CD081932 [ CTCGNAGGCCANAATTCGGCACGAGGCGTTCCGGCTGGAGTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTTCCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGACTTTTTTTACTTGTACATAACCAGAGCAGCTCGCTTGTGGTAGAAATCCTTTCCCATCTAAACGATATCAGGTCACGAACTGGTCGACAGTTGGATGCTACCACTGAATACGAATTTTGAACAAGCCTTCCTGAAACCGTGTGTCCCGTCCAAACTAACCTGTTTAGTTAGGTTATGATAGTACCATGTTATGAAAGTTGTGCAGGATTAATGTCTGTCGGTTCTTTACGACTCCCTGGATGAGGTCATAGAGTACAACATAATTGGCTTGATATGTCACCAGATACGACTCATAACTGTAATTTCTTTTACTTTCTTCATATAAGTGAAAAGAACTTTTTGAACTGAGAGAATTTTTTTGGATGTATTTTTTCTT ACAGAACTGCCCTTCCCCAC ATTC TTGCTCTA TTACTTA TGGNTNTTTTTCTT ATATACTCATCTNCC TCGTTATATC TTACAACCTGACTTNNTTTGNGTGGNGCCTTNTGTACCNNATGTGTCAATAAACAATAC] [+] EMBL CD139863 [ GTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTTCCTTATTAGCAAAACTGGAGAAGCAGAAACCATCGCTTCTCACTATCTATTTTCGCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACCTTGCTATATTGCGACTTTTTTTACTTGTACATAACCAGAGCAGCTCGCTTGTGGTAGAAATCCTTTCCCATCTAAACGATATCAGGTCACGAACTGGTCGACAGTTGGATGCTACCACTGAATACGAATTTTGAACAAGCCTTCCTGAAAACGTGTGTCCCGTCC AACT ACCTGTTTAGTTAGG TATGATA ] consensusID : consensus_10981#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 692 fasta sequence [TCCTTCTGTTCCATGCGCTCTACTGGCGTGATGTNCAATCATCGTTTCAAGTGTCGAGCAAAAGTCGTAATAATACGCTNCAGTCTACCATAGTGTGTGACCCTTCTCCACATATTGNAATCAGTTGCCATCNTGCCTCAGTGTTTCCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGACTTTTTTTACTTGTACATAACCAGAGTTATCAAGGGTAAAGCTTTTGCTCTTCCGGCGTAGTAATGTGATCAAATGAATAATGCGTCCCGACTCACGTTAATACAATAGCACGAACTCCGATTCCTTTTTACTTGTTTCTCCTGTCGGATCTGGGAAGCTCCAAAGTACTGTTTAATCGAGGACTCCATTTGTGTTCACTTTATCGGTGATAAACAAAATACAGCTGATCGTTTTTCTTATGCGCTCTCGTTATTCTAGCATGTACTTTACATCTGAATAATATCAGAAAGTTTTTCTGGCTTTCCTGTGATTTATTTTTAATAAACTTTTATCTCCGCCACCAACCGGGCCTCAACACTAAGGTCTTTAGCTTC] [-] EMBL CD191698 [TCCTTCTGTTCCATGCGCTCTACTGGCGTGATGTNCAATCATCGTTTCAAGTGTCGAGCAAAAGTCGTAATAATACGCTNCAGTCTACCATAGTGTGTGACCCTTCTCCACATATTGNAATCAGTTGCCATCNTGCCTCAGTGTTTCCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGACTTTTTTTACTTGTACATAACCAGAGTTATCAAGGGTAAAGCTTTTGCTCTTCCGGCGTAGTAATGTGATCAAATGAATAATGCGTCCCGACTCACGTTAATACAATAGCACGAACTCCGATTCCTTTTTACTTGTTTCTCCTGTCGGATCTGGGAAGCTCCAAAGTACTGTTTAATCGAGGACTCCATTTGTGTTCACTTTATCGGTGATAAACAAAATACAGCTGATCGTTTTTCTTATGCGCTCTCGTTATTCTAGCATGTACTTTACATCTGAATAATATCAGAAAGTTTTTCTGGCTTTCCTGTGATTTATTTTTAATAAACTTTTATCTCCGCCACCAACCGGGCCTCAACACTAAGGTCTTTAGCTTC] [+] EMBL CD145317 [ AGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGACTTTTTTTACTTGTACATAACCAGAGTTATCAAGGGTAAAGCTTTTGCTCTTCCGGCGTAGTAATGTGATCAAATGAATAATGCGTCCCGACTCACGTTAATACAATAGCACGAACTCCGATTCCTTTTTACTTGTTTCTCCTGTCGGATCTGGGAAGCTCCAAAGTACTGTTTAATCGAGGACTCCATTTGTGTTCACTTTATCGGTGATAAACAAAATACAGCTGATCGTTTTTCTTATGCGCTCTCGTTATTCTAGCATGTACTTTACATCTGAATAATATCAGA ] [-] EMBL CD068427 [ TCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGACTTTTTTTACTTGTACATAACCAGAGTTATCAAGGGTAAAGCTTTTGCTCTTCCGGCGTAGTAATGTGATCAAATGAATAATGCGTCCCGACTCACGTTAATACAATAGCACGAACTCCGATTCCTTTTTACTTGTTTCTCCTGTCGGATCTGGGAAGCTCCAAAGTACTGTTTAATCGAGGACTCCATTTGTGTTCACTTTATCGGTGATAAACAAAATACAGCTGATCGTTT ] [-] EMBL CD134658 [ GTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGACTTTTTTTACTTGTACATAACCAGAGTTATCAAGGGTAAAGCTTTTGCTCTTCCGGCGTAGTAATGTGATCAAATGAATAATGCGTCCCGACTCACGTTAATACAATAGCACGAACTCCGATTCCTTTTTACTTGTTTCTCCTGTCGGATCTGGGAAGCTCCAAAGTACTGTTTAATCGAGGACTCCATTTGTGTTCACTTTATCGGTGATAAACAAAATACAGCTGATCGTTTTTCTTATGCGCTCTCGTTATTCTAGCATGTACTTTACGTCTGAATAATATCAGAAAGTTTTTCTGGCTTTCCTGTGATTTATTTTTAATAAACTTTTATCTCCGCCACCAACCGGGCCTCAACACTAAGGTCCTTAGCTTC] consensusID : consensus_10981#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 682 fasta sequence [AGGCCAGAATTCGGCACGAGGCGTTCTGTTCGTCAATAACTGTTGTCATGAATATATTCCGGTTTCTTGGTGATGCTTCACATTTTGCAGCTATTATAATTTTAGTACTGAAGATTTGGAAAACACGATCTTGTGCAGGTCTGTCAGGACGTAGTCAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTTATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACATTGTATTTAATATATTTTAGATTCAAGGCTACATATGATGGGAATCATGACACGTTCCGGCTGGAGTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTTCCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTC-TTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGACTNTNTTTACTTGTACATAACCAGAGTTATCAAGGGTAAAGCTTTTGCTCTTCCGGC] [+] EMBL CD082662 [AGGCCAGAATTCGGCACGAGGCGTTCTGTTCGTCAATAACTGTTGTCATGAATATATTCCGGTTTCTTGGTGATGCTTCACATTTTGCAGCTATTATAATTTTAGTACTGAAGATTTGGAAAACACGATCTTGTGCAGGTCTGTCAGGACGTAGTCAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTTATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACATTGTATTTAATATATTTTAGATTCAAGGCTACATATGATGGGAATCATGACACGTTCCGGCTGGAGTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTTCCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTC TTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAACTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGACTNTNTTTACTTGTACATAACCAGAGTTATCAAGGGTAAAGCTTTTGCTCTTCCGGC] [+] EMBL CD068138 [ GTTGTCATGAATATATTCCGGTTTCTTGGTGATGCTTCACATTTTGCAGCTATTATAATTTTAGTACTGAAGATTCGGAAAACACGATCTTGTGCAGGTCTGTCAGGACGTAGTCAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTTATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACATTGTATTTAATATATTCTAGATTCAAGGCTACATATGATGGGAATCATGACACGTTCCGGCTGGAGTTCCTTCTTGTTCCATGCGCTCTAC ] [+] EMBL CD196422 [ GATCTTGTGCAGGTCTGTCAGGACGTAGTCAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTTATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACATTGTATTTAATATATTTTAGATTCAAGGCTACATATGATGGGAATCATGACACGTTCCGGCTGGAGTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCAAGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCAGTTGTTCCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTCGCTTGGTTCTTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTAT ] [+] EMBL CD170170 [ CAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTTATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACATTGTATTTAATATATTTTAGATTCAAGGCTACATATGATGGGAATCATGACACGTTCCGGCTGGAGTTCCTTCTTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10981#0 GCGGCCAAAAATTCGGCACGAGGTCTCAGCATTGATTGAGTCCCGTCTGACGTTCTGTTC 60 consensus_10981#3 ---------------------------AGGCCAGAATTCGGCACGA--GGCGTTCTGTTC 31 consensus_10981#2 ------------------------------------------------------------ consensus_10981#1 ------------------------------------------------------------ consensus_10981#0 GTCAAATAACTGTTGTCATGAATATATTCCGGTTTCTTGGTGATGCTTCACATTTTGCAG 120 consensus_10981#3 GTCAA-TAACTGTTGTCATGAATATATTCCGGTTTCTTGGTGATGCTTCACATTTTGCAG 90 consensus_10981#2 ------------------------------------------------------------ consensus_10981#1 ------------------------------------------------------------ consensus_10981#0 CTATTATAATTTTAGTACTGAAGATTTGGAAAACACGATCTTGTGCAGGTCTGTCAGGAC 180 consensus_10981#3 CTATTATAATTTTAGTACTGAAGATTTGGAAAACACGATCTTGTGCAGGTCTGTCAGGAC 150 consensus_10981#2 ------------------------------------------------------------ consensus_10981#1 ------------------------------------------------------------ consensus_10981#0 GTAGTCAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTT 240 consensus_10981#3 GTAGTCAAATTGCGTTCGCTATTGTATTCACTACACGTTATGTTGATCTTCTGACATCTT 210 consensus_10981#2 ------------------------------------------------------------ consensus_10981#1 ------------------------------------------------------------ consensus_10981#0 ATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACAT 300 consensus_10981#3 ATGTGTCTCTATACAATTCGCTTGCAAAGATCATCTTCATATTTTCGTCTTACGCAACAT 270 consensus_10981#2 ------------------------------------------------------------ consensus_10981#1 ------------------------------------------------------------ consensus_10981#0 TGTATTTAATATATTTTAGATTCAAGGCTACATATGATGGGAATCATGACACGTTCCGGC 360 consensus_10981#3 TGTATTTAATATATTTTAGATTCAAGGCTACATATGATGGGAATCATGACACGTTCCGGC 330 consensus_10981#2 ----------------------------TCCTTCTGTT-----CCATGCGCTCTACTGGC 27 consensus_10981#1 ---------------------CCCTCGAGCCAANAATTCGG---CACGAGGCGTTCCGGC 36 * * ** * * * *** consensus_10981#0 -TGGAGTTCCTTC-TTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCA 418 consensus_10981#3 -TGGAGTTCCTTC-TTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCA 388 consensus_10981#2 GTGATGTNCAATCATCGTTTCAAGTGTCGAGCAAAAGTCG-----TAATAATACGCTNCA 82 consensus_10981#1 -TGGAGTTCCTTC-TTGTTCCATGCGCTCTACTGGCGTTGATTGTCAATCATCGTTTTCA 94 ** ** * ** * *** ** * * * ** * *** ** * ** consensus_10981#0 AGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCA 478 consensus_10981#3 AGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCA 448 consensus_10981#2 GTCTACCATAGTGT-GTGACCCTTCTCCACATATT-GNAATCAGTTGCCATCNTGCCTCA 140 consensus_10981#1 AGTTGTCGAGTTGTTGTGGACCTTCTCCATATATTTGGAATCAGTTGCCATCCTGCCTCA 154 * * *** *** ********* ***** * ************** ******* consensus_10981#0 GTTGTTCCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTC 538 consensus_10981#3 GTTGTTCCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTC 508 consensus_10981#2 GTGTTTCCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTC 200 consensus_10981#1 GTTGTTCCTTATTAGCAAAACTGGAGAAGCAGAAACCATCACTTCTCACTATCTATTTTC 214 ** ******************************************************** consensus_10981#0 GCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAA 598 consensus_10981#3 GCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAA 568 consensus_10981#2 GCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAA 260 consensus_10981#1 GCTTGGTTCTTACCGTGGCCTGTACATACTCAACTGGATATACCGGTATTATGTCCAAAA 274 ************************************************************ consensus_10981#0 CTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGACTT 658 consensus_10981#3 CTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGACTN 628 consensus_10981#2 CTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGACTT 320 consensus_10981#1 CTATTACGATTTGATCGCGATATCTGCGGGTGTGTTGCAAACTTTGCTATATTGCGACTT 334 *********************************************************** consensus_10981#0 TTTTTACTTGTACATAACCAGAG----TTATCAAGGGTAAAG--CTTTTGCTCTTCCGGC 712 consensus_10981#3 TNTTTACTTGTACATAACCAGAG----TTATCAAGGGTAAAG--CTTTTGCTCTTCCGGC 682 consensus_10981#2 TTTTTACTTGTACATAACCAGAG----TTATCAAGGGTAAAG--CTTTTGCTCTTCCGGC 374 consensus_10981#1 TTTTTACTTGTACATAACCAGAGCAGCTCGCTTGTGGTAGAAATCCTTTCCCATCTAAAC 394 * ********************* * **** * * *** * * * consensus_10981#0 GTAGTAATGTGATCAAATGAATAATGCGTCCCGACTCACGTTAATACAATAGCACGAACT 772 consensus_10981#3 ------------------------------------------------------------ consensus_10981#2 GTAGTAATGTGATCAAATGAATAATGCGTCCCGACTCACGTTAATACAATAGCACGAACT 434 consensus_10981#1 GATATCAGGTCACGAACTGGTCGACAGTTGGATGCTACCACTGAATACGAATTTTGAACA 454 consensus_10981#0 CCGATTCCTTTTTACTTGTTTC---TCCTGTCGGATCTGGGAAGCT---CCAAAGTACTG 826 consensus_10981#3 ------------------------------------------------------------ consensus_10981#2 CCGATTCCTTTTTACTTGTTTC---TCCTGTCGGATCTGGGAAGCT---CCAAAGTACTG 488 consensus_10981#1 AGCCTTCCTGAAACCGTGTGTCCCGTCCAAACTAACCTGTTTAGTTAGGTTATGATAGTA 514 consensus_10981#0 TTTAATCGAGGACTCCATTTGTGTTCACTTTATCGGTGATAAACAAAATACAGCTGATC- 885 consensus_10981#3 ------------------------------------------------------------ consensus_10981#2 TTTAATCGAGGACTCCATTTGTGTTCACTTTATCGGTGATAAACAAAATACAGCTGATC- 547 consensus_10981#1 CCATGTTATGAAAGTTGTGCAGGATTAATGTCTGTCGGTTCTTTACGACTCCCTGGATGA 574 consensus_10981#0 GTTTTTCTTATGCGCTCTCGTTATTCTAGCATGTACTTTACATCTGAATAATATCAGAAA 945 consensus_10981#3 ------------------------------------------------------------ consensus_10981#2 GTTTTTCTTATGCGCTCTCGTTATTCTAGCATGTACTTTACATCTGAATAATATCAGAAA 607 consensus_10981#1 GGTCATAGAGTACAACATAATTGGCTTGATATGT-CACCAGATACGACTCATAACTGTAA 633 consensus_10981#0 GTTTTTCTGGCTTTCCTGGGATTTATTTTTAATAAACTTTTATCTCCGCCACCAACCGGG 1005 consensus_10981#3 ------------------------------------------------------------ consensus_10981#2 GTTTTTCTGGCTTTCCTGTGATTTATTTTTAATAAACTTTTATCTCCGCCACCAACCGGG 667 consensus_10981#1 -TTTCTTTTACTTTCTTCATATAAGTGAAAAGAACTTTTTGAACTGAGAGAATTTTTTTG 692 consensus_10981#0 ------------------------------------------------------------ consensus_10981#3 ------------------------------------------------------------ consensus_10981#2 CCTCAACACTAAGGTCTTTAGCTTC----------------------------------- 692 consensus_10981#1 GATGTATTTTTTCTTAACAGAACTGCCCTTNCCACAATTCTTTGCTCTATTTACTTATTG 752 consensus_10981#0 ------------------------------------------------------------ consensus_10981#3 ------------------------------------------------------------ consensus_10981#2 ------------------------------------------------------------ consensus_10981#1 GTTTTTTTTCTTTAATATACTCATCTNCCTTCGTTATATCTTTACACCTGACTTTTTTTG 812 consensus_10981#0 ------------------------------------ consensus_10981#3 ------------------------------------ consensus_10981#2 ------------------------------------ consensus_10981#1 TGTGTGTCCTTTGTACCCATGTGTCAATAACAATAC 848 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||