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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10996#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 21 consensus length = 2154 fasta sequence
[TTTTTTATTTTTTTTTTTTTAATGGATAAACGTTACTATTCACATGATAGAATACATGAAATGTGAATATAAACTGGTAATTAATACAGATTTAAGTCGTTTAGTATCAAATTTTATCAAGGTTACACATATCATACAAACCGGACATTTAAAAATAAATCTCATTACAATTATTATAGTTTTGAAAATCTCTTGTGGCTGATACAGAACTTTCTTTCAACTGCTCAAAATTGAAGAAAAGAACAATGAATTAAAACCTTGTTTGAACGAATCACATTTCTGCTTAATAATACGCGATCACAATATAATATAAATATGTACACTTGTTTACAATGAGGTGTCTTTACGACGTGATTAGTAATGAGACTTTTTATGTTTTTTCTTGGACTTTGTTGAATGATGATCGTCCCGATCTCTTGGGTCCTCACGATCATAAGAATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCTGTCAGAGATTCGATTACGCGTAAATGCATAAGCGGCTGGTGGTGAACGATGATGCCTTTTACGAGCTTTGTTTTCGATTTCCAAAGCTTC-TCGACGACGTTTCATGTTAGCAACTACA--GCATGAGCAACAGCT-GCAGGGACTGAATCAGGAGCTGGTGGAGGTGAC-GAACGATACCGATCAGACGTCGTTGATGTGGTAATAACTGT-CGAAGATTTGGGGACAGTTGTACTGGTATTTATACTTCCTTTTGTGATAGAATTAGTTAACTTCAACTGGGTAACCAATTGGGCAGCTTTTTTACGTCTTTCTTCACGCAGACGCTCTTCTTTAGCTGTAGGGACCGCAACCTGATAACCATCGGCAGAGAAGTCTAGAAGACTTGTAGGTTCGTGTATATCTAATAAATCTTCAAGAGCACATGAAGGCCAGTTGGAAGTCAAATGTGAACTTGAATTAGATATCGACTCCACAGGAGAACACGAGTTATTATCATAAGGTGAAGTGGTGTTACAGACAGACTGAACAGGAGACTGAATGTTATGCACTGGTTTATTTCTCTCATGTCGCTCAACGGATATGGAGGGTGATGTACAAACAGAATTCGAATTTGAAGCTCCACTAGAACGATTTGCGTAAGAGTATGGACTTTCTACTTGAGGTGGAGACGATTCCGAAGAAGACGATGAGCTAGGACTGGGAATAC-CAGGTATGACGCACATT-TTTGGAGATCGAGTTTTCCTCTTCCGTGATTTCGACTGACTGTCACTTTTCGAACGACTCA-ATGACTTATTAAGTTGTTCGTTAGCTC-GTCTTGCACTTTTGGAAACAGATTCTGAGTACTCTAGTGCAGCGGCTTCAATTATGTCCATAATTTCTCCCGCCGAAGTTTCTGTATTTTGAGTGGACTGAGACTTTGATGTAATCGGGCGGGCTAATCGAAAACTGATACCCGTTTGACGTTCTGAATTACAAGTTTCAAAATCATCTTTCTTGTCCTTATGAGAATCAAGAGACTGAGGATTTTTAAGAGAACCACCTTTTGCTTTATTATCTTGAAACATTGTTTCAGGCTTTTCAATTGAATCCAATTTTTTTGACGAGCTTACTTTAGATGATTTTGAAGGAGAAATATTACTAAAATTAGAATCGGCAGCTTTAGTCAAGCTATCATCAGGATCTAGTTCTTTCCGTTTAGACATGTAATATGAATGTAAAGGATGATCTGATTTCAGAAATCCAAATCGTGGATCTTTGCTTTTTTGACGAATGACCAATTCTTCAAATTCTAAGCCATTACGAACAACATATTCTGCCATTTTATTTATAATACCACGTTGTTCATCACTAAGTGGAGGCTCGAACATGACTGGAGCACTAGCTTTTAAACGTGTTTGTTGGACAACATTGACTGCAGCCGCAGCTGCTATAGCGGCTGCCTTAGCTGCTTCTTGTACAATATTGAAACTTTCATCGTTGACATGTTCAGGCAAAGCCCACTGGTTAGAATAATGTGTGTAATAATGAGCATAGTAGTGTTTATAATACTCCTGGTAAATACGCTCATACTCTTCTGGAGATAAAGGATCTACTAATTCTGAAATCATATTGTC-TTCCC-ACGACTG--ACGTCAGCAAGGCTTTCGTTAGTTGTGGAAACGTCGGCTTGAACTTCAGATTGTGGT]
[+] EMBL AI394839 [TTTTTTATTTTTTTTTTTTTAATGGATAAACGTTACTATTCACATGATAGAATACATGAAATGTGAATATAAACTGGTAATTAATACAGATTTAAGTCGTTTAGTATCAAATTTTATCAAGGTTACACATATCATACAAACCGGACATTTAAAAATAAATCTCATTACAATTATTATAGTTTTGAAAATCTCTTGTGGCTGATACAGAACTTTCTTTCAACTGCTCAAAATTGAAGAAAAGAACAATGAATTAAAACCTTGTTTGAACGAATCACATTTCTGCTTAATAATACGCGATCACAATATAATATAAATATGTACACTTGTTTACAATGAGGTGTCTTTACGACGTGATTAGTAATGAGACTTTTTATGTTTTTTCTTGGACTTTGTTGAATGATGATCGTCTCGATCTCTTGGGTCCTCACGATCATAAGAATCACATCc ]
[-] EMBL CD080579 [ ATAATACGCGATCACAATATAATATAAATATGTACACTTGTTTACAATGAGGTGTCTNTACGACGTGATTAGTAATGAGACTTTTTATGTTTTTTCTTGGACTNTGTTGAATGATGATCGTCCCGATCTCTTGGGTCCTCACGATCATAAGAATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCTGTCAGAGATTCGATTACGCGTAAATGCATAAGCGGCTGGTGGTGAACGATGATGCCTTTTACGAGCTTTGTTTTCGATTTCCAAAGCTTC TCGACGACGTTTCATGTTAGCAACTACA GCATGAGCAACAGCT GCAGGGACTGAATCAGGAGCTGGTGGAGGTGAC GAACGATACCGATCAGACGTCGTTGATGTGGTAATAACTGT CGAAGATTTGGGGACAGTTGTACTGGTATTTATACTTCCTTTTGTGATAGAATTAGTTAACTTCAACTGGGTAACCAATTGGGCAGCTTTTTTACGTCTTTCTTCACGCAGACGCTCTTCTTTAGCTGTAGGGACCGCAACCTGATAACCATCGGCAGAGAAGTCTAGAAGACTTGTAGGTTCGTGTATATCTAATAAATCTTCAAGAGCACATGAAGGCCAGTTGGAAGTCAAATGTGAACTT AA TAGATATCGACTCCACAGG ]
[+] EMBL CD137450 [ TATGTACACTTGTTTACAATGAGGTGTCTTTACGACGTGATTAGTAATGAGACTTTTTATGTTTTTTCTTGGACTTTGTTGAATGATGATCGTCCCGATCTCTTGGGTCCTCACGATCATAAGAATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCTGTCAGAGATTCGATTACGCGTAAATGCATAAGCGGCTGGTGGTGAACGATGACGCCTTTTACGAGCTTTGTTTTCGATTTCCAAAGCTTC TCGACGACGTTTCATGTTAGCAACTACA GCATGAGCAACAGCT GCAGGGACTGAATCAGGAGCTGGTGGAGGTGAC GAACGATACCGATCAGACGTCGTTGATGTGGTAATAACTGT CGAAGATTTGGGGACAGTTGTACTGGTATTTATACTTCCTTTTGTGATAGAATTAGTTAACTTCAACTGGGTAACCAATTGGGCAGCTTTTTTACGTCTTTCTTCACGCAGACGCTCTTC ]
[-] EMBL CD083765 [ cTGGNTCCTCACGATCATAAGAATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCTGTCAGAGATTCGATTACGCGTAAATGCATAAGCGGCTGGTGGTGAACGATGACGCCTTTTACGAGCTTTGTTTTCGATTTCCAAAGCTTCTTCGACGACGTTTCATGTTAGCAACTACAAGGCATGAGCAACAGCTAGCAGGGACTGAATCAGGAGCTGGTGGAGGTGACAGAACGATACCGATCAGACGTCGTTGATGTGGTAATAACAGT CGAAGATTTGGGGACAGTTGT ]
[+] EMBL CD090785 [ CGATGATGCCTTTTACGAGCTTTGTTTTCGATTTCCAAAGCTTC TCGACGACGTTTCATGTTAGCAACTACA GCATGAGCAACAGCT GCAGGGACTGAATCAGGAGCTGGTGGAGGTGAC GAACGATACCGATCAGACGTCGTTGATGTGGTAATAACTGT CGAAGATTTGGGGACAGTTGTACTGGTATTTATACTCCCTTTTGTGATAGAATTATTTAACTTCAACTGGGCAACCAATTGGGCATCTCTTTCACGTCT ]
[-] EMBL CD120685 [ GATGATGCCTTTTACGAGCTTTGTTTTCGATTTCCAAAGCTTC TCGACGACGTTTCATGTTAGCAACTACA GCATGAGCAACAGCT GCAGGGACTGAATCAGGAGCTGGTGGAGGTGAC GAACGATACCGATCAGACGTC ]
[-] EMBL CD120611 [ GATGATGCCTTTTACGAGCTTTGTTTTCGATTTCCAAAGCTTC TCGACGACGTTTCATGTTAGCAACTACA GCATGAGCAACAGCT GCAGGGACTGAATCAGGAGCTGGTGGAGGTGAC GAACGATACCGATCAGACGTC ]
[-] EMBL CD196886 [ TGTGTTCGATTTCCAAAGCTTC TCGACGACGTTTCATGTTAGCAACTACA GCATGAGCAACAGCT GCAGGGACTGAATCAGGAGCTGGTGGAGGTGAC GAACGATACCGATCAGACGTCGTTGATGTGGTAATAACTGTACGAAGATTTGGGGACAGTTGTACTGGTAT ]
[+] EMBL CD165247 [ TCAGACGTCGTTGATGTGGTAATAACTGT CGAAGATTTGGGGACAGTTGTACTGGTATTTATACTTCCTTTTGTGATAGAATTAGTTAACTTCAACTGGGTAACCAATTGGGCAGCTTTTCTACGTCTTTCTTCACGCAGACGCTCTTCTTTAGCTGTAGGGACCGCAACCTGATAACCATCGGCAGAGAAGTCTAGAAGACTTGTAGGTTCGTGTATATCTAATAAATCTTCAAGAGCACATGAAGGCCAGTTGGAAGTCAAATGTGAACTTGAATTAGATATCGACTCCACAGGAGAACACGAGTTATTATCATAAGGTGAAGTGGTGTTACAGACAGACTGAACAGGAGACTGAATGTTATGCACTGGTTTATTTCTCTCATGTCGCTCAACGGATATGGAGGGT ]
[-] EMBL CD166406 [ ATCGGCAGAGAAGTCTAGAAGACTTGTAGGTTCGTGTATATCTAATAAATCTTCAAGAGCACATGAAGGCCAGTTGGAAGTCAAATGTGAACTTGAATTAGATATCGACTCCACAGGAGAACACGAGTTATTATCATAAGGTGAAGTGGTGTTACAGACAGACTGAACAGGAGACTGAATGTTATGCACTGGTTTATTTCTCTCATGTCGCTCAACGGATATGGAGGGTGATGTACAAACAGAATTCGAATTTGAAGCTCCACTAGAACGATTTGCGTAAGAGTATGGACTTTCTACTTGAGGTGGAGACGATTCCGAAGAAGACGATGAGCTAGGACTGGGAATAC CAGGTATGACGCACATT TTTGGAGATCGAGTTTTCCTCTTCCGTGATTTCGACTGACTGTCACTTTTCGAACGACTCA ATGACTTATTAAGTTGTTCGT ]
[+] EMBL CD112879 [ GTCTAGAAGACTTGTAGGTTCGTGTATATCTAATAAATCTTCAAGAGCACATGAAGGCCAGTTGGAAGTCAAATGTGAACTTGAATTAGATATCGACTCCACAGGAGAACACGAGTTATTATCATAAGGTGAAGTGGTGTTACAGACAGACTGAACAGGAGACTGAATGTTATGCACTGGTTTATTTCTCTCATGTCGCTCAACGGATATGGAGGGTGATGTACAAACAGAATTCGAATTTGAAGCTCCACTAGAACGATTTGCGTAAGAGTATGGACTTTCTACTTGAGGTGGAGACGATTCCGAAGAAGACGATGAGCTAGGACTGGGAATAC CAGGTATGACGCACATT TTTGGAGATCGAGTTTTCCTCTTCCGTGATTTCGACTGACTGTCACTTTTCGAACGACTCA ATGACTTATTAAGTTGTTCGTTAGCTC GTCTTGCACTTTTGGAAACAGATTCTGAGTACTCTAGTGCAGCGGCTTCAATTATGTCCATAATTTCTCCCGCCGAAGTCTCTGTATTTTGAGTGGACTGAGACTTTGA ]
[+] EMBL CD117186 [ ACAGGAGAACACGAGTTATTATCATAAGGTGAAGTGGTGTTACAGACAGACTGAACAGGAGACTGAATGTTATGCACTGGTTTATTTCTCTCATGTCGCTCAACGGATATGGAGGGTGATGTACAAACAGAATTCGAATTTGAAGCTCCACTAGAACGATTTGCGTAAGAGTATGGACTTTCTACTTGAGGTGGAGACGATTCCGAAGAAGACGATGAGCTAGGACTGGGAATAC CAGGTATGACGCACATT TTTGGAGATCGAGTTTTC ]
[-] EMBL CD061336 [ ATACACAGGTATGACGCACATTGTTTGGAGATCGAGTTTTCCTCTTCCGTGATTTCGACTGACTGTCACTTTTCGAACGACTCATATGACTTATTAAGTTGTTCGTTAGCTCAGTC TGCACTa ]
[+] EMBL CD200677 [ TATGACGCACATT TTTGGAGATCGAGTTTTCCTCTTCCGTGATTTCGACTGACTGTCACTTTTCGAACGACTCA ATGACTTATTAAGTTGTTCGTTAGCTC GTCTTGCACTTTTGGAAACAGATTCTGAGTACTCTAGTGCAGCGGCTTCAATTATGTCCATAATTTCTCCCGCCGAAGTTTCTGTATTTTGAGTGGACTGAGACTTTGATGTAATCGGGCGGGCTAATCGAAAACTGATACCCGTTTGACGTTCTGAATTACAAGTTTCAAAATCATCTTTCTTGTCCTTATGAGAATCAAGAGACTGAGGATTTTTAAGAGAACCACCTTTTGCTTTATTATCTTGAAACATTGTTTCAGGCTTTTCAATTGAATCCAATTTTTTTGACGAGCTTACTTTAGATGATTTTGAAGGAGAAATATTACTAAAATTAGAATCGGCAGCTTTAGTCAAGCTATCATCAGGATCTAGTTCTTTCCGTTTAGACATGTAATATGAATGTAAAGGATGATCTGATTTCAGAAATCCAAATCGTGGATCTTTGCTTTTTTGACGAATGACCAATTCTTCANATTCTAAGCCATTGCGAACAACA ]
[+] EMBL CD124714 [ TCGAACGACTCA ATGACTTATTAAGTTGTTCGTTAGCTC GTCTTGCACTTTTGGAAACAGATTCTGAGTACTCTAGTGCAGCGGCTTCAATTATGTCCATAATTTCTCCCGCCGAAGTTTCTGTATTTTGAGTGGACTGAGACTTTGATGTAATCGGGCGGGCTAATCGAAAACTGATACCCGTTTGACGTTCTGAATTACAAGTTTCAAAAT ]
[-] EMBL CD165145 [ AGCGGCTTCAATTATGTCCATAATTTCTCCCGCCGAAGTTTCTGTATTTTGAGTGGACTGAGACTTTGATGTAATCGGGCGGGCTAATCGAAAACTGATACCCGTTTGACGTTCTGAGTTACAAGTTTCAAAATCATCTTTCTTGTCCTTATGAGAATCAAGAGACTGAGGATTTTTAAGAGAACCACCTTTTGCTTTATTATCTTGAAACATTGTTTCAGGCTTTTCAATTGAATCCAATTTTTTTGACGAGCTTACTTTAGATGATTTTGAAGGAGAAATATTACTAAAATTAGAA ]
[+] EMBL CD146367 [ AATTTCTCCCGCCGAAGTTTCTGTATTTTGAGTGGACTGAGACTTTGATGTAATCGGGCGGGCTAATCGAAAACTGATACCCGTTTGACGTTCTGAATTACAAGTTTCAAAATC ]
[-] EMBL CD165082 [ TCTCCCGCCGAAGTTTCTGTATTTTGAGTGGACTGAGACTNTGATGTAATCGGGCGGGCTAATCGAAAACTGATACCCGTTTGACGTTCTGAATTACAAGTTTCAAAATCATCTTTCTTGTCCTTATGAGAATCAAGAGACTGAGGATTTTTAAGAGAACCACCTTTTGCTTTATTATCTTGAAACATTGTTTCAGGCTTTTCAATTGAATCCAATTTTTTTGACGAGCTTACTTTAGATGATTTTGAAGGAGAAATATTACTAAAATTAGAA ]
[+] EMBL CD130316 [ GTAATCGGGCGGGCTAATCGAAAACTGATACCCGTTTGACGTTCTGAATTACAAGTTTCAAAATCATCTTTCTTGTCCTTATGAGAATCAAGAGACTGAGGATTTTTAAGAGAACCACCTTTTGCTTTATTATCTTGAAACATTGTTTCAGGCTTTTCAATTGAATCCAATTTTTTTGACGAGCTTACTTTAGATGATTTTGAAGGAGAAATATTACTAAAATTAGA ]
[-] EMBL CD069479 [ TTGTTTGACGAGCTTACTTTAGATGATTTTGAAGGAGAAATATTACTAAAATTAGAATCGGCAGCTTTAGTCAAGCTATCATCAGGATCTAGTTCTTTCCGTTTAGACATGTAATATGAATGTAAAGGATGATCTGATTTCAGAAATCCAAATCGTGGATCTTTGCTTTTTTGACGAATGACCAATTCTTCAAATTCTAAGCCATTACGTACAACATATTCTGCCATTTTATTTATAATACCACGTTGTTCATCACTAAGTGGAGGCTCGAACATGACTGGAGCACTAGCTTTTAAACGTGTTTGTTGGACAACATTGACTGCAGCCGCAGCTGCTATAGCGGCTGCCTTAGCTGCTTCTTGTACAATATTGAAACTTTCATCGTTGACATGTTCAGGCAAAGCCCACTGGTTAGAATAATGTGTGTAATAATGAGCATAGTAGTGTTTATAATACTCCTGGTAAATACGCTCATACTCTTCTGGAGATAAAGGATCTACTAATTCTGAAATCATATTGTC TTCCC ACGACTG ACGTC ]
[+] EMBL CD061732 [ TTCCGTTTAGACATGTAATATGAATGTAAAGGATGATCTGATTTCAGAAATCCAAATCGTGGATC TTGCTTTTTTGACGAATGACCAATTCTTCAAATTCTAAGCCATTACGAACAACATATTCTGCCATTTTATTTATAATACCACGTTGTTCATCACTAAGTGGAGGCTCGAACATGACTGGAGCACTAGCTTTTAAACGTGTTTGTTGGACAACATTGACTGCAGCCGCAGCTGCTATAGCGGCTGCCTTAGCTGCTTCTTGTACAATATTGAAACTTTCATCGTTGACATGTTCAGGCAAAGCCCACTGGTTAGAATAATGTGTGTAATAATGAGCATAGTAGTGTTTATAATACTCCTGGTAAATACGCTCATACTCTTCTGGAGATAAAGGATCTACTAATTCTGAAATCATATTGTCTTTCCCAACGACTGGAACGTCAGCAAGGCTTTCGTTAGTTGTGGAAACGTCGGCTTGAACTTCAGATTGTGGT]
consensusID : consensus_10996#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 784 fasta sequence
[TAAAATTAGAATCGGCAGCTTTAGTCAAGCTATCATCAGGATCTAGTTCTTTCCGTTTAGACATGTAATATGAATGTAAAGGATGATCTGATTTCAGAAATCCAAATCGTGGATCTTTGCTTTAAGAACTATTTCCATTTGACTTCCTTGTCGAGAGACGAAAACAGCAGTTTTTTCAATAATGTGAGCTTGTTTATCGGATTCCGGAAGTTGGAAATTCGACAAAAGTTGTTGTAGCTCAGGAGGACAATTATATGGCTCTTCAGAGTGCTGTTCAGTTGACCCCTTGTTAACATATGATTCGTCGCCATTTCGTTGGGAAACATTTTCATCGTAAGAAAAGCTAACGGCTCCATAGTCATTGCGAGATCGTTCAGCTTCACGTNTCCGAGCTTCTTATTGAAAGTATGCTTATTCCCATAGNCTCATCAGGCTCGAATTGCATGTCCCACTCCAAAAAACAACCATCTTGAATTGCGAGTTCATGGATGTCCACTTGCATTTCCAAATAACGTTCGAAATCACACATCTTTTCTATTGCAATCTCTTCTTCAGACAATTGATCGTCAGGACTTAAGTCGCAATTAGGATCTCCCTCATAAATATCAGTGAGATACCCACGTCCATCGAACCTATCAATCAAAATTGATGTGTCACCACACCATGGTATCAATAGTTTTTCTCCATCAACTTCACAAGCTTTTTCCCGATCATCAAACAAGGTACAGCTTGTACCTTCTACCAGAAAATGTTTCTCTTCGCTACAGTCATTCATCTTAGTCGG]
[+] EMBL CD089686 [TAAAATTAGAATCGGCAGCTTTAGTCAAGCTATCATCAGGATCTAGTTCTTTCCGTTTAGACATGTAATATGAATGTAAAGGATGATCTGATTTCAGAAATCCAAATCGTGGATCTTTGCTTTAAGAACTATTTCCATTTGACTTCCTTGTCGAGAGACGAAAACAGCAGTTTTTTCAATAATGTGAGCTTGTTTATCGGATTCCGGAAGTTGGAAATTCGACAAAAGTTGTTGTAGCTCAGGAGGACAATTATATGGCTCTTCAGAGTGCTGTTCAGTTGACCCCTTGTTAACATATGATTCGTCGCCATTTCGTTGGGAAACATTTTCATCGTAAGAAAAGCTAACGGCTCCATAGTCATTGCGAGATCGTTCAGCTTCACGTNTCCGAGCTTCTTATTGAAAGTATGCTTATTCCCATAGNCTCATCAGGCTCG ]
[-] EMBL CD096008 [ GCTCTTCAGAGTGCTGTTCAGTTGACNCCTTGTTAACATATGATTCGTCGCCATTTCGTTGGGAAACATNTTCATCGTAAGAAAAGCTAACGGCTCCATAGTCATTGCGAGATCGTTCAGCTTCACGTTTCCGAGCTTCTTATTGAAAGTATGCTTATTCCCATAGCCTCATCAGGCTCGAATTGCATGTCCCACTCCAAAAAACAACCATCTTGAATTGCGAGTTCATGGATGTCCACTTGCATTTCCAAATAACGTTCGAAATCACACATCTTTTCTATTGCAATCTCTTCTTCAGACAATTGATCGTCAGGACTTAAGTCGCAATTAGGATCTCCCTCATAAATATCAGTGAGATACCCACGTCCATCGAACCTATCAATCAAAATTGATGTGTCACCACACCATGGTATCAATAGTTTTTCTCCATCAACTTCACAAGCTTTTTCCCGATCATCAAACAAGGTACAGCTTGTACCTTCTACCAGAAAATGTTTCTCTTCGCTACAGTCATTCATCTTAGTCGG]
consensusID : consensus_10996#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 693 fasta sequence
[AACTCGCAATTCAAGATGAAGAAGCTCGGAAACGTGAAGCTGAACGATCTCGCAATGACTATGGAGCCGTTAGCTTTTCTTACGATGAAAATGTTTCCCAACGAAATGGCGACGAATCATATGTTAACAAGGGGTCAACTGAACAGCACTCTGAAGAGCCATATAATTGTCCTCCTGAGCTACAGCAACTTTTGTCGAATTTCCAACTTCCGGAATCCGATAAACAAGCTCACATTATTGAAAAAACTGCTGTTTTCGTCTCTCGACAAGGAAGTCAAATGGAAATAGTTCTTAAAGCTAAACAAAATAAAAATCCATTATTTGGCTTTTTGACTTATGACCATCCACTTAATCCCTTCTACAAGGAGATTGTGAGGTTAATTTCCCAAGGTCGTTACGTTCCGAAACCTCGTCAGACTGCAGATAAACCAGCTGGGACACTCTTTACAAGTGCAGATGAGTCAAGCCAGTCAATCCATGAAGATGTTTACGAATTGAAGCTACCAAAGGTGGATATTTCAAATACATCATATGCTCCACTAATATCCAAGTTCAAGAAAATTAATGAAATGGCTGCAGCTGTCGCAGCAGCAAATCGTGTTATCCCTGTTTCTGATGTCCAGTCTTCTGTCGCTACTCCTGAGGCATTGACAGAAACAGAACGTCTTCTTTACGATCCTAGTGAGATCGACA]
[-] EMBL CD194543 [AACTCGCAATTCAAGATGAAGAAGCTCGGAAACGTGAAGCTGAACGATCTCGCAATGACTATGGAGCCGTTAGCTTTTCTTACGATGAAAATGTTTCCCAACGAAATGGCGACGAATCATATGTTAACAAGGGGTCAACTGAACAGCACTCTGAAGAGCCATATAATTGTCCTCCTGAGCTACAGCAACTTTTGTCGAATTTCCAACTTCCGGAATCCGATAAACAAGCTCACATTATTGAAAAAACTGCTGTTTTCGTCTCTCGACAAGGAAGTCAAATGGAAATAGTTCTTAAAGCTAAACAAAATAAAAATCCATTATTTGGCTTTTTGACTTATGACCATCCACTTAATCCCTTCTACAAGGAGATTGTGAGGTTAATTTCCCAAGGTCGTTACGTTCCGAAACCTCGTCAGACTGCAGATAAACCAGCTGGGACACTCTTTACAAGTGCAGATGAGTCAAGCCAGTCAATCCATGAAGATGTTTACGAATTGAAGCTACCAAAGGTGGATATTTCAAATACATCATA ]
[+] EMBL CD130358 [ GACACTCTTTACAAGTGCAGATGAGTCAAACAAGTCAATCCATGAAGATGTTTACGAATTGAAGCTACCAAAGGTGGATATTTCAAATACATCATATGCTCCACTAATATCCAAGTTCAAGAAAATTAATGAAATGGCTGCAGCTGTCGCAGCAGCAAATCGTGTTATCCCTGTTTCTGATGTCCAGTCTTCTGTCGCTACTCCTGAGGCATTGACAGAAACAGAACGTCTTCTTTACGATCCTAGTGAGATCGACA]
consensusID : consensus_10996#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence
[GGCTTCTTCAGTACTGCAGTGATCTAATTCCCCAAATTATTACCCTTTTTCTCAATTTTGTGGCCAACTGGCTTTTATTTCGCTACCTTCAGGTTCGATGGACGTGGGTATCTCACTGATATTTATGAGGGAGATCCTAATTGCGACTTAAGTCCTGACGATCAATTGTCTGAAGAAGAGATTGCAATAGAAAAGATGTGTGATTTCGAACGTTATTTGGAAATGCAAGTGGACGTCCATGAACTCGCAATTCAAGATGGTGAGTTTACTTTTGTATTTGTGTATTGATGTATTCTGCAATACCACCCTTGCTGATTGTTAATGTGATCTTAGCTTTTGAGTCAACACATCTTTGGTAAACGCATGTTGACAACTTCGTCCTACGTGGTTGTTTTTTGGAGTGGGACATGCAATTCGAGCCTGATGAGGCTATGGGAATAAGCA]
[+] EMBL CD190544 [GGCTTCTTCAGTACTGCAGTGATCTAATTCCCCAAATTATTACCCTTTTTCTCAATTTTGTGGCCAACTGGCTTTTATTTCGCTACCTTCAGGTTCGATGGACGTGGGTATCTCACTGATATTTATGAGGGAGATCCTAATTGCGACTTAAGTCCTGACGATCAATTGTCTGAAGAAGAGATTGCAATAGAAAAGATGTGTGATTTCGAACGTTATTTGGAAATGCAAGTGGACGTCCATGAACTCGCAATTCAAGATGGTGAGTTTACTTTTGTATTTGTGTATTGATGTATTCTGCAATACCACCCTTGCTGATTGTTAATGTGATCTTAGCTTTTGAGTCAACACATCTTTGGTAAACGCATGTTGACAACTTCGTCCTACGTGGTTGTTTTTTGGAGTGGGACATGCAATTCGAGCCTGATGAGGCTATGGGAATAAGCA]
consensusID : consensus_10996#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 287 fasta sequence
[AATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCTGTCAGGGATTAAGAATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCTGTCAGAGATTAAGAATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCTGTCAGAGATTAAGAATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCTGTCAGAGATTAAGAATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCTGTCAGAGATTAAGAATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCT]
[+] EMBL CD089809 [AATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCTGTCAGGGATTAAGAATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCTGTCAGAGATTAAGAATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCTGTCAGAGATTAAGAATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCTGTCAGAGATTAAGAATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCTGTCAGAGATTAAGAATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10996#0 TTTTTTATTTTTTTTTTTTTAATGGATAAACGTTACTATTCACATGATAGAATACATGAA 60
consensus_10996#1 ------------------------------------------------------------
consensus_10996#4 ------------------------------------------------------------
consensus_10996#3 ------------------------------------------------------------
consensus_10996#2 ------------------------------------------------------------
consensus_10996#0 ATGTGAATATAAACTGGTAATTAATACAGATTTAAGTCGTTTAGTATCAAATTTTATCAA 120
consensus_10996#1 ------------------------------------------------------------
consensus_10996#4 ------------------------------------------------------------
consensus_10996#3 ------------------------------------------------------------
consensus_10996#2 ------------------------------------------------------------
consensus_10996#0 GGTTACACATATCATACAAACCGGACATTTAAAAATAAATCTCATTACAATTATTATAGT 180
consensus_10996#1 ------------------------------------------------------------
consensus_10996#4 ------------------------------------------------------------
consensus_10996#3 ------------------------------------------------------------
consensus_10996#2 ------------------------------------------------------------
consensus_10996#0 TTTGAAAATCTCTTGTGGCTGATACAGAACTTTCTTTCAACTGCTCAAAATTGAAGAAAA 240
consensus_10996#1 ------------------------------------------------------------
consensus_10996#4 ------------------------------------------------------------
consensus_10996#3 ------------------------------------------------------------
consensus_10996#2 ------------------------------------------------------------
consensus_10996#0 GAACAATGAATTAAAACCTTGTTTGAACGAATCACATTTCTGCTTAATAATACGCGATCA 300
consensus_10996#1 ------------------------------------------------------------
consensus_10996#4 ------------------------------------------------------------
consensus_10996#3 ------------------------------------------------------------
consensus_10996#2 ------------------------------------------------------------
consensus_10996#0 CAATATAATATAAATATGTACACTTGTTTACAATGAGGTGTCTTTACGACGTGATTAGTA 360
consensus_10996#1 ------------------------------------------------------------
consensus_10996#4 ------------------------------------------------------------
consensus_10996#3 ------------------------------------------------------------
consensus_10996#2 ------------------------------------------------------------
consensus_10996#0 ATGAGACTTTTTATGTTTTTTCTTGGACTTTGTTGAATGATGATCGTCCCGATCTCTTGG 420
consensus_10996#1 ------------------------------------------------------------
consensus_10996#4 ------------------------------------------------------------
consensus_10996#3 ------------------------------------------------------------
consensus_10996#2 ------------------------------------------------------------
consensus_10996#0 GTCCTCACGATCATAAGAATCACATCTAGGAGTTGGTGACCTCCTTGGAGATCTGTCAGA 480
consensus_10996#1 ------------------------------------------------------------
consensus_10996#4 ------------------------------------------------------------
consensus_10996#3 ------------------------------------------------------------
consensus_10996#2 ------------------------------------------------------------
consensus_10996#0 GATTCGATTACGCGTAAATGCATAAGCGGCTGGTGGTGAACGATGATGCCTTTTACGAGC 540
consensus_10996#1 ------------------------------------------------------------
consensus_10996#4 ------------------------------------------------------------
consensus_10996#3 ------------------------------------------------------------
consensus_10996#2 ------------------------------------------------------------
consensus_10996#0 TTTGTTTTCGATTTCCAAAGCTTCTCGACGACGTTTCATGTTAGCAACTACAGCATGAGC 600
consensus_10996#1 ------------------------------------------------------------
consensus_10996#4 ------------------------------------------------------------
consensus_10996#3 ------------------------------------------------------------
consensus_10996#2 ------------------------------------------------------------
consensus_10996#0 AACAGCTGCAGGGACTGAATCAGGAGCTGGTGGAGGTGACGAACGATACCGATCAGACGT 660
consensus_10996#1 ------------------------------------------------------------
consensus_10996#4 ------------------------------------------------------------
consensus_10996#3 ------------------------------------------------------------
consensus_10996#2 ------------------------------------------------------------
consensus_10996#0 CGTTGATGTGGTAATAACTGTCGAAGATTTGGGGACAGTTGTACTGGTATTTATACTTCC 720
consensus_10996#1 ------------------------------------------------------------
consensus_10996#4 ------------------------------------------------------------
consensus_10996#3 ------------------------------------------------------------
consensus_10996#2 ------------------------------------------------------------
consensus_10996#0 TTTTGTGATAGAATTAGTTAACTTCAACTGGGTAACCAATTGGGCAGCTTTTTTACGTCT 780
consensus_10996#1 ------------------------------------------------------------
consensus_10996#4 ------------------------------------------------------------
consensus_10996#3 ------------------------------------------------------------
consensus_10996#2 ------------------------------------------------------------
consensus_10996#0 TTCTTCACGCAGACGCTCTTCTTTAGCTGTAGGGACCGCAACCTGATAACCATCGGCAGA 840
consensus_10996#1 ------------------------------------------------------------
consensus_10996#4 ------------------------------------------------------------
consensus_10996#3 ------------------------------------------------------------
consensus_10996#2 ------------------------------------------------------------
consensus_10996#0 GAAGTCTAGAAGACTTGTAGGTTCGTGTATATCTAATAAATCTTCAAGAGCACATGAAGG 900
consensus_10996#1 ------------------------------------------------------------
consensus_10996#4 ------------------------------------------------------------
consensus_10996#3 ------------------------------------------------------------
consensus_10996#2 ------------------------------------------------------------
consensus_10996#0 CCAGTTGGAAGTCAAATGTGAACTTGAATTAGATATCGACTCCACAGGAGAACACGAGTT 960
consensus_10996#1 ------------------------------------------------------------
consensus_10996#4 ------------------------------------------------------------
consensus_10996#3 ------------------------------------------------------------
consensus_10996#2 ------------------------------------------------------------
consensus_10996#0 ATTATCATAAGGTGAAGTGGTGTTACAGACAGACTGAACAGGAGACTGAATGTTATGCAC 1020
consensus_10996#1 ------------------------------------------------------------
consensus_10996#4 ------------------------------------------------------------
consensus_10996#3 ------------------------------------------------------------
consensus_10996#2 ------------------------------------------------------------
consensus_10996#0 TGGTTTATTTCTCTCATGTCGCTCAACGGATATGGAGGGTGATGTACAAACAGAATTCGA 1080
consensus_10996#1 --------------------------------------------------TAAAATTAGA 10
consensus_10996#4 ------------------------------------------------------------
consensus_10996#3 ----------------------------GGCTTCTTCAGTACTGCAGTGATCTAATTC-- 30
consensus_10996#2 -----------------------------AACTCGCAATTCAAGATGAAGAAGCTCGGAA 31
consensus_10996#0 ATTTGAAGCTCCACTAGAACGATTTGCGTAAGAGTATGGACTTTCTACTTGAGGTGGAGA 1140
consensus_10996#1 ATCGGCAGCTTTAGTCAAGCTAT---CATCAGGATCTAGTTCTTTCCGTTTAGAC--ATG 65
consensus_10996#4 ----------------------------------------------------------AA 2
consensus_10996#3 -CCCAAATTATTACCCTTTTTCTCAATTTTGTGGCCAACTGGCTTTTATTTCGCTACCTT 89
consensus_10996#2 ACGTGAAGCTGAACGATCTCGCAATGACTATGGAGCCGTTAGCTTTTCTTACGATGAAAA 91
consensus_10996#0 CGATTCCGAAGAAGACGATGAGCTAGGAC-TGGGAATACCAGGT--ATGACGCACATTTT 1197
consensus_10996#1 TAATATGAATGTAAAGGATGATCTGATTT-CAGAAATCCAAATC--GTGG-ATCTTTGCT 121
consensus_10996#4 TCACATCTA-GGAGTTGGTGACCTCCTTG-GAGATCTGTCAGGG--ATTAAGAATCACAT 58
consensus_10996#3 CAGGTTCGATGGACGTGGGTATCTCACTGATATTTATGAGGGAG--ATCCTAATTGCGAC 147
consensus_10996#2 TGTTTCCCAACGAAATGGCGACGAATCATATGTTAACAAGGGGTCAACTGAACAGCACTC 151
* * * *
consensus_10996#0 TGGAGATCGA-GTTTTCCTCTTCCGTGATTTCGACTGACTGTCACTTTTCGAACGACTCA 1256
consensus_10996#1 TTAAGAACTA-TTTCCATTTGACTTCCTTGTCGAGAGACGAAAACA--GCAGTTTTTTCA 178
consensus_10996#4 CTAGGAGTTG-GTGACCTCCTTGGAGATCTGTCAGAGATTAAGA-------ATCACATCT 110
consensus_10996#3 TTAAGTCCTG-ACGATCAATTGTCTGAAG---AAGAGATTGCAATA----GAAAAGATGT 199
consensus_10996#2 TGAAGAGCCATATAATTGTCCTCCTGAGCTACAGCAACTTTTGTCGAATTTCCAACTTCC 211
* *
consensus_10996#0 ATGACTTATTAAGTTGTTCGTTAGC-----TCGTC----TTGC-ACTTTTGGAAACAGAT 1306
consensus_10996#1 ATAA--TGTGAGCTTGTTTATCGGA-----TTCCGGAAGTTGG-AAATTCGACAAAAGTT 230
consensus_10996#4 AGGAGTTGGTGACCTCCTTGGAGAT-----CTGTCAGAGATTA-AGAATCACATCTAGGA 164
consensus_10996#3 GTGATTTCGAACGTTATTTGGAAATGCAAGTGGACGTCCATGA-ACTCGCAATTCAAGAT 258
consensus_10996#2 GGAATCCGATAAACAAGCTCACATTA----TTGAAAAAACTGCTGTTTTCGTCTCTCGAC 267
* * *
consensus_10996#0 TCTGA--GTACTCTAGTGCAGCGGCTTCAATTATGTCCAT--AATTTCTCCCGCCGAAGT 1362
consensus_10996#1 GTTG----TAGCTCAGGAGGACAATTATATGGCTCTTCAG--AGTGCTGTTCAGTTGACC 284
consensus_10996#4 GTTGG--TGACCTCCTTGGAGATCTGTCAGAGAT--TAAG--AATCACATCTA--GGAGT 216
consensus_10996#3 GGTGAGTTTACTTTTGTATTTGTGTATTGATGTATTCTGC--AATACCACCCTTGCTGAT 316
consensus_10996#2 AAGGAAGTCAAATGGAAATAGTTCTTAAAGCTAAACAAAATAAAAATCCATTATTTGGCT 327
* * *
consensus_10996#0 TTCTGTATTTTGAGTGGACTGAGACTTTGATGTAATCGGGCGGGCTAATCG--AAAACTG 1420
consensus_10996#1 CCTTGT-TAACATATGATTCGTCGCCATTTCGTTGGGAAACATTTTCATCGTAAGAAAAG 343
consensus_10996#4 TGGTGACCTCC-------TTGGAGATCTGTCAGAGATTAAGAATCACATCTAGGAGTTGG 269
consensus_10996#3 TGTTAATGTGATCTTAGCTTTTGAGTCAACACATCTTTGGTAAACGCATGTTGACAACTT 376
consensus_10996#2 TTTTGACTTATGACCATCCACTTAATCCCTTCTACAAGGAGATTGTGAGGTT--AATTTC 385
* *
consensus_10996#0 ATACCCGTTTGACGTTCTGAATTAC--AAGTTTCAAAATCATCTTTCTTGTCCTTATGAG 1478
consensus_10996#1 CTAACGGCTCCATAGTCATTGCGAG--ATCGTTCAGCTTCACGTNTCCGAGCTTCTT--- 398
consensus_10996#4 TGACCTCCTTGGAGATCT------------------------------------------ 287
consensus_10996#3 CGTCCTACGTGGTTGTTTTTTGGAGTGGGACATGCAATTCGAGCCTGATGAGGCTATGGG 436
consensus_10996#2 CCAAGGTCGTTACGTTCCGAAACCTCGTCAGACTGCAGATAAACCAGCTGGGACACTCTT 445
*
consensus_10996#0 AATCAAGAGACTGAGGATTTTTAAGAGAACCACCTTTTGCTTTATTATCTTGAAACATTG 1538
consensus_10996#1 -ATTGAAAGTATGCTTATTCCCA---TAGNCTCATCAGGCTCGAATTGCATGTCCCACTC 454
consensus_10996#4 ------------------------------------------------------------
consensus_10996#3 AATAAGCA---------------------------------------------------- 444
consensus_10996#2 TACAAGTGCAGATGAGTCAAGCCAGTCAATCCATGAAGATGTTTACGAATTGAAGCTACC 505
consensus_10996#0 TTTCAGGCTTTTCAATTGAATC-CAATTTTTTTGACGA--GCTTACTTT---AGATGATT 1592
consensus_10996#1 CAAAAAACAACCATCTTGAATTGCGAGTTCATGGATGTCCACTTGCATTTCCAAATAACG 514
consensus_10996#4 ------------------------------------------------------------
consensus_10996#3 ------------------------------------------------------------
consensus_10996#2 AAAGGTGGATATTTCAAATACATCATATGCTCCACTAATATCCAAGTTCAAGAAAATTAA 565
consensus_10996#0 TTGAAGGAGAAATATTACTAAAATTAGAATCGGCAGCTTTAGTCAAGCTATCATCAGGAT 1652
consensus_10996#1 TTCGAAATCACACATCTTTTCTATTGCAATCT-CTTCTTCAGACAATTGATCGTCAGGAC 573
consensus_10996#4 ------------------------------------------------------------
consensus_10996#3 ------------------------------------------------------------
consensus_10996#2 TGAAATGGCTGCAGCTGTCGCAGCAGCAAATCGTGTTATCCCTGTTTCTGATGTCCAGTC 625
consensus_10996#0 CTAGTTCTTTCCGTTTAGACATGTAATATGAATGTAAAGGATGATCTGATTTCAGAAATC 1712
consensus_10996#1 TTAAGTCG--CAATTAGGATCTCCCTCATAAATATCAGTGAGATACCCACGTCC---ATC 628
consensus_10996#4 ------------------------------------------------------------
consensus_10996#3 ------------------------------------------------------------
consensus_10996#2 TTCTGTCGCTACTCCTGAGGCATTGACAGAAACAGAACGTCTTCTTTACGATCCT--AGT 683
consensus_10996#0 CAAATCGTGGATCTTTGCTTTTTTGACGAATGACCAATTCTTCAAATTCTAAGCCATTAC 1772
consensus_10996#1 GAACCTATCAATCAAAA-----TTGATGTGTCACCACACCATGGTATCAATAGTTTTTCT 683
consensus_10996#4 ------------------------------------------------------------
consensus_10996#3 ------------------------------------------------------------
consensus_10996#2 GAGATCGACA-------------------------------------------------- 693
consensus_10996#0 GAACAACATATTCTGCCATTTTATTTATAATACCACGTTGTTCATCACTAAGTGGAGGCT 1832
consensus_10996#1 CCATCAACTTCACAAGCTTTTTCCCGATCATCAAACAAGGTACAGCTTGTACCTTCTACC 743
consensus_10996#4 ------------------------------------------------------------
consensus_10996#3 ------------------------------------------------------------
consensus_10996#2 ------------------------------------------------------------
consensus_10996#0 CGAACATGACTGGAGCACTAGCTTTTAAACGTGTTTGTTGGACAACATTGACTGCAGCCG 1892
consensus_10996#1 AGAAAATGTTTCTCTTCGCTACAGTCATTCATCTTAGTCGG------------------- 784
consensus_10996#4 ------------------------------------------------------------
consensus_10996#3 ------------------------------------------------------------
consensus_10996#2 ------------------------------------------------------------
consensus_10996#0 CAGCTGCTATAGCGGCTGCCTTAGCTGCTTCTTGTACAATATTGAAACTTTCATCGTTGA 1952
consensus_10996#1 ------------------------------------------------------------
consensus_10996#4 ------------------------------------------------------------
consensus_10996#3 ------------------------------------------------------------
consensus_10996#2 ------------------------------------------------------------
consensus_10996#0 CATGTTCAGGCAAAGCCCACTGGTTAGAATAATGTGTGTAATAATGAGCATAGTAGTGTT 2012
consensus_10996#1 ------------------------------------------------------------
consensus_10996#4 ------------------------------------------------------------
consensus_10996#3 ------------------------------------------------------------
consensus_10996#2 ------------------------------------------------------------
consensus_10996#0 TATAATACTCCTGGTAAATACGCTCATACTCTTCTGGAGATAAAGGATCTACTAATTCTG 2072
consensus_10996#1 ------------------------------------------------------------
consensus_10996#4 ------------------------------------------------------------
consensus_10996#3 ------------------------------------------------------------
consensus_10996#2 ------------------------------------------------------------
consensus_10996#0 AAATCATATTGTCTTCCCACGACTGACGTCAGCAAGGCTTTCGTTAGTTGTGGAAACGTC 2132
consensus_10996#1 ------------------------------------------------------------
consensus_10996#4 ------------------------------------------------------------
consensus_10996#3 ------------------------------------------------------------
consensus_10996#2 ------------------------------------------------------------
consensus_10996#0 GGCTTGAACTTCAGATTGTGGT 2154
consensus_10996#1 ----------------------
consensus_10996#4 ----------------------
consensus_10996#3 ----------------------
consensus_10996#2 ----------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||