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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11001#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 716 fasta sequence
[CCTCGNAGGCC-AGAATTCGGCACGAGGG------CGAAAAATAAAAATGATATTGAAACAATTTTTCATTCTAATTGTTATATTGGATGTAAGTGAAGTGACTTTTGGAAATGAAGAGAATATATACTCTGAACAATTAGAAAGACCACAATGTCATCTCTTATGCGGACTTTGTAGACGTATAGGAAGACTGATAAAAATATTCCTTGAAGATGAACCATTCATCCCATTAACTTC-AAGAGTATTATATCAGATGTGCAAATTAATTCCTGAAAGGCATTGGAGAAATGAGTGTCTAGA-TATTACA-CATTATTTACCGAGGAAAATTCATGAATTCGCTGATCATATAAATGTAACTTTGGAATGTTCTGAACTAGGGTTCTGTCACCATAAACACACAATGCTATCAAATTCTGAAATTACATCATGTATTAATGATCATATAAACTATGGCTTATCTTTAGCCAACCCACCAAAATATAAGGAGACGATCATAAAGAATATATGTACACATCATGCAGCTGATAAACACAAATGTTTCGAAACTATAGAATCAATAATGACATTTCTACTTGAAATTACTATCTAAAATAACATACTGAATTCTGAAACTGTCACTTCTTTGATAAATAATACAGTAAAATATAATATAAATTGAAAATAAAAAAAATAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA]
[+] EMBL CD080254 [CCTCGNAGGCCAAAAATTCGGCACGAGGG CGAAAAATAAAAATGATATTGAAACAATTTTTCATTCTAATTGTTATATTGGATGTAAGTGAAGTGACTTTTGGAAATGAAGAGAATATATACTCTGAACAATTAGAAAGACCACAATGTCATCTCTTATGCGGACTTTGTAGACGTATAGGAAGACTGATAAAAATATTCCTTGAAGATGAACCATTCATCCCATTAACTTC AAGAGTATTATATCAGATGTGCAAATTAATTCCTGAAAGGCATTGGAGAAATGAGTGTCTAGA TATTACA CATTATTTACCGAGGAAAATTCATGAATTCGCTGATCATATAAATGTAACTTTGGAATGTTCTGAACTGGGGTTCTGTCACCATAAACACACAATGCTATCAAATTCTGAAATTACATCATGTATTAATGATCATATAAACTATGGCTTATCTTTAGCCAACCCACCAAAATATAAGGAGACGATCATAAAGAATATATGTACACATCATGCAGCTGATAAACACAAATGTTTCGAAACTATAGAATCAATAATGACATTTCTACTTGAAATTACTATCTAAAATAACATACTGAATTCTGAAACTGTCACTTCTTTGATAAAATATACAGTANAATATA ]
[+] EMBL CD079559 [ tacacAGGCC AGAATTTTGCACGAGGGAACAAACGAAAAATAAAAATGATATTGAAACAATTTTTCATTCTAATTGTTATATTGGATGTAAGTGAAGTGACTTTTGGAAATGAAGAGAATATATACTCTGAACAATTAGAAAGACCACAATGTCATCTCTTATGCGGACTTTGTAGACGTATAGGAAGACTGATAAAAATATTCCTTGAAGATGAACCATTCATCCCATTAACTTC AAGAGTATTATATCAGATGTGCAAATTAATTCCTGAAAGGCATTGGAGAAATGAGTGTCTAGA TATTACA CATTATTTACCGAGGAAAATTCATGAATTCGCTGATCATATAAATGTAACTTTGGAATGTTCTGAACTAGGGTTCTGTCACCATAAACACACAATGCTATCAAATTCTGAAATTACATCATGTATTAATGATCATATAAACTATGGCTTATCTTTAGCCAACCCACCAAAATATAAGGAGACGATCATAAAGAATATATGTACACATCATGCAGCTGATAAACACAAATGTTTCGAAACTATAGAATCAATAATGACATTTCTACTTGAAATTACTATCTAAAATAACATACTGAATTCTGAAACTGTCACTTCTTTGATAAATAATACAGTAAAATATA ]
[+] EMBL CD082906 [ cgAGGCC ANAATTCGGCACGAGGG CGAAAAATAAAAATGATATTGAAACAATTTTTCATTCTAATTGTTATATTGGATGTAAGTGAAGTGACTTTTGGAAATGAAGAGAATATATACTCTGAACAATTAGAAAGACCACAATGTCATCTCTTATGCGGACTTTGTAGACGTATAGGAAGACTGATAAAAATATTCCTTGAAGATGAACCATTCATCCCATTAACTTC AAGAGTATTATATCAGATGTGCAAATTAATTCCTGAAAGGCATTGGAGAAATGAGTGTCTAGA TATTACA CATTATTTACCGAGGAAAATTCATGAATTCGCTGATCATATAAATGTAACTTTGGAATGTTCTGAACTAGGGTTCTGTCACCATAAACACACAATGCTATCAAATTCTGAAATTACATCATGTATTAATGATCATATAAACTATGGCTTATCTTTAGCCAACCCACCAAAATATAAGGAGACGATCATAAAGAATATATGTACACATCATGCAGCTGATAAACACAAATGTTTCGAAACTATAGAATCAATAATGACATTTCTACTTGAAATTACTATCTAAAATAACATACTGAATTCTGAAACTGTCACTTCTTTGATAAATAATACAGTAAAATATA ]
[-] EMBL CD073826 [ aacaaa CGAAAAATAAAAATGATATTGAAACAATTTTTCATTCTAATTGTTATATTGGATGTAAGTGAAGTGACTTTTGGAAATGAAGAGAATATATACTCTGAACAATTAGAAAGACCACAATGTCATCTCTTATGCGGACTTTGTAGACGTATAGGAAGACTGATAAAAATATTCCTTGAAGATGAACCATTCATCCCATTAACTTC AAGAGTATTATATCAGATGTGCAAATTAATTCCTGAAAGGCATTGGAGAAATGAGTGTCTAGA TATTACA CATTATTTACCGAGGAAAATTCATGAATTCGCTGATCATATAAATGTAACTTTGGAATGTTCTGAACTAGGGTTCTGTCACCATAAACACACAATGCTATCAAATTCTGAAATTACATCATGTATTAATGATCATATAAACTATGGCTTATCTTTAGCCAACCCACCAAAATATAAGGAGACGATCATAAAGAATATATGTACACATCATGCAGCTGATAAACACAAATGTTTCGAAACTATAGAATCAATAATGACATTTCTACTTGAAATTACTATCTAAAATAACATACTGAATTCTGAAACTGTCACTTGTTTGATAAATAATACAGAAAAATATAATATAAATTGAAAATAAAAAAAA ]
[-] EMBL CD074172 [ GAAAAATAAAAATGATATTGAAACAATTTTTCATTCTAATTGTTATATTGGATGTAAGTGAAGTGACTTTTGGAAATGAAGAGAATATATACTCTGAACAATTAGAAAGACCACAATGTCATCTCTTATGCGGACTTTGTAGACGTATAGGAAGACTGATAAAAATATTCCTTGAAGATGAACCATTCATCCCATTAACTTC AAGAGTATTATATCAGATGTGCAAATTAATTCCTGAAAGGCATTGGAGAAATGAGTGTCTAGA TATTACA CATTATTTACCGAGGAAAATTCATGAATTCGCTGATCATATAAATGTAACTTTGGAATGTTCTGAACTGGGGTTCTGTCACCATAAACACACAATGCTATCAAATTCTGAAATTACATCATGTATTAATGATCATATAAACTATGGCTTATCTTTAGCCAACCCACCAAAATATAAGGAGACGATCATAAAGAATATATGTACACATCATGCAGCTGATAAACACAAATGTTTCGAAACTATAGAATCAATAATGACATTTCTACTTGAAATTACTATCTAAAATAACATACTGAATTCTGAAACTGTCACGTCTTTGATAAATAATACAAAAAAATATAATATAAATTGAAAATAAAAAAAGTAAA ]
[-] EMBL CD074719 [ GAAAAATAAAAATGATATTGAAACAATTTTTCATTCTAATTGTTATATTGGATGTAAGTGAAGTGACTTTTGGAAATGAAGAGAATATATACTCTGAACAATTAGAAAGACCACAATGTCATCTCTTATGCGGACTTTGTAGACGTATAGGAAGACTGATAAAAATATTCCTTGAAGATGAACCATTCATCCCATTAACTTC AAGAGTATTATATCAGATGTGCAAATTAATTCCTGAAAGGCATTGGAGAAATGAGTGTCTAGA TATTACA CATTATTTACCGAGGAAAATTCATGAATTCGCTGATCATATAAATGTAACTTTGGAATGTTCTGAACTAGGGTTCTGTCACCATAAACACACAATGCTATCAAATTCTGAAATTACATCATGTATTAATGATCATATAAACTATGGCTTATCTTTAGCCAACCCACCAAAATATAAGGAGACGATCATAAAGAATATATGTACACATCATGCAGCTGATAAACACAAATGTTTCGAAACTATAGAATCAATAATGACATTTCTACTTGAAATTACTATCTAAAATAACATACTGAATTCTGAAACTGTCACTTCTTTGATAAATAATACAGTAAAATATAA ]
[+] EMBL AI977658 [ AACAATTTTTCATTCTAATTGTTATATTGGATGTAAGTGAAGTGACTTTTGGAAATGAAGAGAATATATACTCTGAACAATTAGAAAGACCACAATGTCATCTCTTATGCGGACTTTGTAGACGTATAGGAAGACTGATAAAAATATTCCTTGAAGATGAACCATTCATCCCATTAACTTC AAGAGTATTATATCACATGTGCAAATTAATTCCTGAAAGGCATTGGAGAAATGAGTGTCTAGA TATTACA CATTATTTACCGAGGAAAATTCATGAATTCGCTGATCATATAAATGTAACTTTGGAATGTTCTGAACTAGGGTTCTGTCACCATAAACACACAATGCTATCAAATTCTGAAATTACATCATGTATTAATGATCATATAAACTATGGCTTATCTTTAGCCAACCCACCAAAATATAAGGAGACGATCATAAAGAATATATGTACACATCATGCAGCTGATAAACACAAATGTTTCGAAACTATAGAATCAATAATGACATTTCTACTTGAAATTACTATCTAAAATAACATACTGAATTCTGAg ]
[-] EMBL CD076490 [ TGGATGTAAGTGAAGTGACTTTTGGAAATGAAGAGAATATATACTCTGAACAATTAGAAAGACCACAATGTCATCTCTTATGCGGACTTTGTAGACGTATAGGAAGACTGATAAAAATATTCCTTGAAGATGAACCATTCATCCCATTAACTTC AAGAGTATTATATCAGATGTGCAAATTAATTCCTGAAAGGCATTGGAGAAATGAGTGTCTAGA TATTACA CATTATTTACCGAGGAAAATTCATGAATTCGCTGATCATATAAATGTAACTTTGGAATGTTCTGAACTAGGGTTCTGTCACCATAAACACACAATGCTATCAAATTCTGAAATTACATCATGTATTAATGATCATATAAACTATGGCTTATCTTTAGCCAACCCCCCAAAATATAAGGAGACGATCATAAAGAATATATGTACACATCATGCAGCTGATAAACACAAATGTTTCGAAACTATAGAATCAATAATGACATTTCTACTTGAAATTACTATCTAAAATAACATACTGAATTCTGAAACTGTCACTTCTTTGATAAATAATACAGTAAAATATAA ]
[-] EMBL BF936377 [ AGATGAACCATTCATCCCATTAACTTCAAAGAGTATTATATCAGATGTGCAAATTAATTCCTGAAAGGCATTGGAGAAATGAGTGTTTAGA TATTACA CATTATTTACCGAGGAAAATTCATGAATTCGCTGATCATATAAATGTAACTTTGGAATGTTTTGAAATAGGGTTCTGTCACCATAAACACACAATGCTATCAAATTCTGAAATTACATCATGTATTAATGATCATATAAACTATGGTTTATCTTTAGCCAACCCACCAAAATATAAGGAGACGATCATAAAGAATATATGTACACATCATGCAGCTGATAAACACAAATGTTTTGAAACTATAGAATCAATAATGACATTTTTACTTGAAATTACTATCTAAAATAACATATTGAATTCTGAAACTGTCACTTTTTTGATAAATAATACAGTAAAATATAATATAAATTGAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA]
[+] EMBL BF936720 [ AGACTATTACACCATTATTTACCGAGGAAAATTCATGAATTCGCTGATCATATAAATGTAACTTTGGAATGTTCT AACTAGGGTTCTGTCACCATAAACACACAATGCTATCAAATTCTGAAATTACATCATGTATTAATGATCATATAAACTATGGCTTATCTTTAGCCAACCCACCAAAATATAAGGAGACGATCATAAAGAATATATGTACACATCATGCAGCTGATAAACACAAATGTTTCGAAACTATAGAATCAATAATGACATTTCTACTTGAAATTACTATCTAAAATAACATACTGAATTCTGAAACTGTCACTTCTTTGATTAAT ATACAGg ]
[-] EMBL AI618818 [ GAGACGATCATAAAGAATATATGTACACATCATGCAGCTGATAAACACAAATGTTTCGAAACTATAGAATCAATAATGACATTTCTACTTGAAATTACTATCTAAAATAACATACTGAATTCTGAAACTGTCACTTCTTTGATAAATAATACAGTAAAATATAA ]
consensusID : consensus_11001#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 646 fasta sequence
[CAAACAAACGAACAAACGAAAAATAAAAATGATATT-GAAACAA-TTTTTCATTCTAATTGTTATATT-GGATGTAAGTGAAGTG-ACTTTTGGAAAT-GAAGAG-AATATAT-ACTCTG-AACAATTA-G-AAAGA-CCACAATGTCATCTCTTATGCGGAC-TTT-GTAGACGTATAGGAAGACTGATAAAAATA-TT-CCTTGAA-GATGAACCATT-CATCCCATTAAC-TTCAAGAGTATTATATCAGATGTGCAAATTAATT-CCT-GAAAGGCATTGGA-GAAATGAGTGTCTAGATATTACACATTATTTACCGA-GGAAAATTCATGAATTCGC-TGATCATATAAATGTAACTTT-GGAATGTTCTGAACTAGGGTT-CTGTCACCATAAACACACAATGCTATCAAATTCTGAAATTACATCATGTATT-AATGATCATATAAACTAT-GGCTTATCTTTAGCCAACT-CA-CCAAAATATAAGGAGACGATCATAAAGAATATATGTACACATCATGCAGCTGATAAACACAAATGTTTCGAAACTATAGAATCAATAATAACATTTCTACTTGAA-ATTACTATCTAA-AATAACATACTGAATTCTGAAACTGTCACTTCTTTGATAAATAATACAGTAAAATATAATATAAATTGAANNTNN]
[+] EMBL CD133813 [CAAACAAACGAACAAACGAAAAATAAAAATGATATT GAAACAA TTTTTCATTCTAATTGTTATATT GGATGTAAGTGAAGTG ACTTTTGGAAAT GAAGAG AATATAT ACTCTG AACAATTA G AAAGA CCACAATGTCATCTCTTATGCGGAC TTT GTAGACGTATAGGAAGACTGATAAAAATA TT CCTTGAA GATGAACCATT CATCCCATTAAC TTCAAGAGTATTATATCAGATGTGCAAATTAATT CCT GAAAGGCATTGGA GAAATGAGTGTCTAGATATTACACATTATTTACCGA GGAAAATTCATGAATTCGC TGATCATATAAATGTAACTTT GGAATGTCCTGAACTAGGGTT CTGTCACCATAAACACACAATGCTATCAAATTCTGAAATTACATCATGTATT AATGATCATATAAACTAT GGCTTATCTTTAG ]
[+] EMBL CD133937 [ AAACAAACGAACAAACGAAAAATAAAAATGATATT GAAACAA TTTTTCATTCTAATTGTTATATT GGATGTAAGTGAAGTG ACTTTTGGAAAT GAAGAG AATATAT ACTCTG AACAATTA G AAAGA CCACAATGTCATCTCTTATGCGGAC TTT GTAGACGTATAGGAAGACTGATAAAAATA TT CCTTGAA GATGAACCATT CATCCCATTAAC TTCAAGAGTATTATATCAGATGTGCAAATTAATT CCT GAAAGGCATTGGA GAAATGAGTGTCTAGATATTACACATTATTTACCGA GGAAAATTCATGAATTCGC TGATCATATAAATGTAACTTT GGAATGTTCTGAACTAGGGTT CTGTCACCATAAACACACAATGCTATCAAATTCTGAAATTACATCATGTATT AATGATCATATAAACTAT GGCTTATCTTTAGC ]
[+] EMBL CD133846 [ AAACAAACGAACAAACGAAAAATAAAAATGATATT GAAACAA TTTTTCATTCTAATTGTTATATT GGATGTAAGTGAAGTG ACTTTTGGAAAT GAAGAG AATATAT ACTCTG AACAATTA G AAAGA CCACAATGTCATCTCTTATGCGGAC TTT GTAGACGTATAGGAAGACTGATAAAAATA TT CCTTGAA GATGAACCATT CATCCCATTAAC TTCAAGAGTATTATATCAGATGTGCAAATTAATT CCT GAAAGGCATTGGA GAAATGAGTGTCTAGACATTACACATTATTTACCGA GGAAAATTCATGAATTCGC TGATCATATAAATGTAACTTT GGAATGTTCTGAACTAGGGTT CTGTCACCATAAACACACAATGCTATCAAATTCTGAAATTACATCATGTATT AATGATCATATAAACTAT GGCTTATCTTTAGC ]
[+] EMBL SMAA18472 [ AACAAACGAACAAACGAAAAATAAAAATGATATT GAAACAA TTTTTCATTCTAATTGTTATATT GGGTGTAAGTGAAGTG ACTTTTGGAAAT GAAGAG AATATAT ACTCTG AACAATTA G AAAGA CCACAATGTCATCTCTTATGCGGAC TTT GTAGACGTATAGGAAGACTGATAAAAATA TT CCTTGAA GATGAACCATT CATCCCATTAAC TTCAAGAGTATTATATCAGATGTGCAAATTAATT CCT GAAAGGCATTGGA GAAATGAGTGTCTAGATATTACACATTATTTACCGG GGNAAATTCATGAATTCGCNGGATCATATAAATGTAACTTTGGGAATGTTCTGAACTAGGGTTNTTGTCACCATAAACACACATTG ]
[+] EMBL SMAA18524 [ AACAAACGAACAAACGAAAAATAAAAATGATATT GAAACAA TTTTTCATTCTAATTGTTATATT GGGTGTAAGTGAAGTG ACTTTTGGAAAT GAAGAG AATATAT ACTCTG AACAATTA G AAAGA CCACAATGTCATCTCTTATGCGGAC TTT GTAGACGTATAGGAAGACTGATAAAAATA TT CCTTGAA GATGAACCATT CATCCCATTAAC TTCAAGAGTATTATATCAGATGTGCAAATTAATT CCTAGAAA ]
[+] EMBL CD082567 [ cAACGAACAAACGAAAAATAAAAATGATATT GAAACAA TTTTTCATTCTAATTGTTATATT GGATGTAAGTGAAGTG ACTTTTGGAAAT GAAGAG AATATAT ACTCTG AACAATTA G AAAGA CCACAATGTCATCTCTTATGCGGAC TTT GTAGACGTATAGGAAGACTGATAAAAATA TT CCTTGAA GATGAACCATT CATCCCATTAAC TTCAAGAGTATTATATCAGATGTGCAAATTAATT CCT GAAAGGCATTGGA GAAATGAGTGTCTAGATATTACACATTATTTACCGA GGAAAATTCATGAATTCGC TGATCATATAAATGTAACTTT GGAATGTTCTGAACTAGGGTT CTGTCACCATAAACACACAATGCTATCAAATTCTGAAATTACATCATGTATT AATGATCATATAAACTAT GGCTTATCTTTAGCCAACC CA CCAAAATATAAGGAGACGATCATAAAGAATATATGTACACATCATGCAGCTGATAAACACAAATGTTTCGAAACTATAGAATCAATAATGACATTTCTACTTGAA ATTACTATCTAA AATAACATACTGAATTCTGAAACTGTCACTTCTTTGATAAATAATACAGTAAAATATAATATAAATTGAANNTNN]
[-] EMBL AI111151 [ AAAAATGATATTGGAACCAATTTTTTCATTCTAATTGTTATATTGGGATGTAAGTGAAGGGAACTTTTGGAAATGGAGGAG GATATATAATTNTG AACAATTAGG AAAGACCCACAATGTCTTTTNTTATGCGGAC TTT GTAGACGTATAGGAAGACTGATAAAAATATTT CCTTGAA GATGAACCATT CATCCCATTAAC TTCAAGAGTATTATATCAGATGTGCAAATTAATT CCT GAAAGGCATTGGA GAAATGAGTGTCTAGATATTACACATTATTTACCGA GGNAAATTCATGAATTCGC TGATCATATAAATGTAACTTT GGAATGTTCTGAACTAGGGTT CTGTCACCATAAACACACAATGCTATCAAATTCTGAAATTACATCATGTATT AATGATCATATAAACTAT GGCTTATCTTTAGCCAACT CA CCNAAATATAAGGAGACGATCATAAAGAATATATGTACACATCATGCAGCTGATAAACACAAATGTTTCGAAACTATAGAATCAATAATAACATTTCTACTTGAA ATTACTATCTAA AATAACATACTGAATTCTGAAACTGTCACTTCTTTGATAAA ]
[+] EMBL AI976891 [ AACAA TTTTTCATTCTAATTGTTATATT GGGTGTAAGTGAAGTG ACTTTTGGAAAT GAAGAG AATATAT ACTCTG AACAATTA G AAAGA CCACAATGTCATCTCTTATGCGGAC TTT GTAGACGTATAGGAAGACTGATAAAAATA TT CCTTGAA GATGAACCATT CATCCCATTAAC TTCAAGAGTATTATATCAGATGTGCAAATTAATT CCT GAAAGGCATTGGA GAAATGAGTGTCTAGATATTACACATTATTTACCGA GGAAAATTCATGAATTCGC TGATCATATAAATGTAACTTT GGAATGTTCTGAACTAGGGTT CTGTCACCATAAACACACAATGCTATCAAATTCTGAAATTACATCATGTATT AATGATCATATAAACTAT GGCTTATCTTTAGCCAACT CA CCAAAATATAAGGAGACGATCATAAAGAATATATGTACACATCATGCAGCTGATAAACACAAATGTTTCGAAACTATAGGATCAATAATAACATTTCTACTTGAA ATTACTAT ]
[+] EMBL SM763 [ TTTCATTCTAATTGTTATATT GGGTGTAAGTGAAGTG ACTTTTGGAAAT GAAGAGCAATATAT ACTCTGNAACAATTA GNAAAGA CCACAATGTCATCTCTTATGCGGAC TTTGGTAGACGTATAGGAAGACTGATAAAAATA TT CCTTGAAGGATGAACCATT CATCCCATTAAC TTCAAGAGTATTATATCAGATGTGCAAATTAATT CCT GAAAGGCATTGGAGGAAATGAGTGTCTAGATATTACACATTATTTACCGAGGGAAAATTCATGAATTCGC TGATCATATAAATGTAACTTG GGAATGTTCTGAACTAGGGTT CTGTCACCATAAACACACAATGCTATCAAATTCTGAAATTACATCATGTATTAAATGATCATATAAACTATGGGCTTATCTTTAGg ]
[-] EMBL AI110899 [ GAC TTT GTAGACGTATAGGAAGACTGATAAAAATA TTCCCTTGAA GATGAACCATT CATCCCATTAACTTTCAAGAGTATTATATCAGATGTGCAAATTAATTCCCT GAAAGGCATTGGA GAAATGAGTGTCTAGATATNACACATTATTTACCGA GGNAAATTCATGAATTCGC TGATCATATAAATGNAACTTT GGAATGTTCTGAACTAGGGTT CTGTCACCATAAACACACAANGCTATCAAATTCTGAAATTACATCATGTATT AATGATCATATAAACTAN GGCTTATCTTTAGCCAACT CA CCNAAATATAAGGAGACGATCATAAAGAATATATGTACACATCATGCAGCTGATAAACACAAATGTTTCGAAACTATAGAATCAATAATAACATTTCTACTTGAA ATTACTATCTAA AATAACANACTGAATTCTGAAACTGTCACTTCTTTGATAAA ]
[-] EMBL AI111108 [ GACTTTT GTAGACGTATAGGAAGACTGATAAAAATA TTCCCTTGAA GATGAACCATTCCATCCCATTAAC TTCAAGAGTATTATATCAGATGTGCAAATTAATT CCT GAAAGGCATTGGA GAAATGAGTGTCTAGATATTACACATTATTTACCGA GGAAAATTCATGAATTCGC TGATCATATAAATGTAACTTT GGAATGTTCTGAACTAGGGTT CTGTCACCATAAACACACAATGCTATCAAATTCTGAAATTACATCATGTATT AATGATCATATAAACTAT GGCTTATCTTTAGCCAACT CA CCNAAATATAAGGAGACGATCATAAAGAATATATGTACACATCATGCAGCTGATAAACACAAATGTTTCGAAACTATAGAATCAATAATAACATTTNTACTTGAA ATTACTATCTAA AATAACATACTGAATTCTGAAACTGTCACTTCTTTGATAAA ]
[-] EMBL AI111058 [ AATTAATTCCCT GAAAGGCATTGGA GAAANGAGTGTNTAGATATNACACATTATTTACCGA GGAAAATTCATGAATTCGC TGATCANATAAATGNAACTTT GGAATGTTCTGAACTAGGGTT CTGTCACCATAAACACACAANGCTATCAAATTCTGAAATNACATCATGTATT AATGATCATATAAACTAT GGCTTATCTTTAGCCAACT CA CCAAAATATAAGGAGACGATCATAAAGAATATATGTACACATCATGCAGCTGATAAACACAAATGTTTCGAAACTATAGAATCAATAATAACATTTCTACTTGAA ATTACTATCTAA AATAACATACTGAATTCTGAAACTGTCACTTCTTT ]
[-] EMBL AI111070 [ ATTCCCT GAAAGGCATTGGA GAAATGAGTGTCTAGATATTACACATTATTTACCGA GGAAAATTCATGAATTCGC TGATCATATAAATGTAACTTT GGAATGTTCTGAACTAGGGTT CTGTCACCATAAACACACAATGCTATCAAATTCTGAAANTACATCATGTATT AATGATCATATAAACTAT GGCTTATCTTTAGCCAACT CA CCAAAATATAAGGAGACGATCATAAAGAATATATGTACACATCATGCAGCTGATAAACACAAATGTTTCGAAACTATAGAATCAATAATAACATTTCTACTTGAA ATTACTATCTAA AATAACATACTGAATTCTGAAACTGTCACTTCTTTGATAAA ]
[+] EMBL SM683 [ CATTGGA GAAATGAGTGTCTAGATATTACACATTATTTACCGA GGAAAATTCATGAATTCGC TGATCATATAAATGTAACTTT GGAATGTTCTGAACTAGGGTT CTGTCACCATAAACACACAATGCTATCAAATTCTGAAATTACATCATGTATT AATGATCATATAAACTAT GGCTTATCTTTAGCCAACT CA CCAAAATATAAGGAGACGATCATAANGAATNTATGTACACATCATGCAGCTGATAAACACAANTGTTTCGAAACTNTAGNATCANTCATGANATTTCTNCTTGAANATTACTNTCTAANATTNCCATACTGAATTC ]
[+] EMBL BG930141 [ gT CTGTCACCATAAACACACAATGCTATCAAATTCTGAAATTACATCATGTATT AATGATCATATAAACTAT GGCTTATCTTTAGCCga ]
[-] EMBL AI110927 [ TGTCACCATAAACACACAATGCTATCAAATTCTGAAATTACATCANGTNTT AATGATCATATAAACTAT GGCTTATCTTTAGCCAACTNCACCCAAAANTNAGGGGGANGATCATAGAGAATATATGTACACATCATGCAGCTGATAAACACAAATGTTTCGAAACTATAGNATCAATAATAACATTTCTACTTGAA ATTACTATCTAA AATAACATACTGAATTCTGAAACTGTCACTTCTTTGATAAA ]
consensusID : consensus_11001#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence
[TCGCAGGCCANAATTCTGCACGAGGGCGAAAAATAAAAATGATATTGAAACAATTTTTCATTCTAATTGTTATATTGGATGTAAGTGAAGTGACTTTTGGAAATGAAGAGAATATATACTCTGAACAATTAGAAAGACCACAATGTCATCTCTTATGCGGACTTTGTAGACGTATAGGAAGACTGATAAAAATATTCCTTGAAGATGAACCATTCATCCCATTAACTTATTAATTCCTGAAAGGCATTGGAGAAATGAGTGTCTAGATATTACACATTATTTACCGAGGAAAATTCATGAATTCGCTGATCATATAAATGTAACTTTGGAATGTTCTGAACTAGGGTTCTGTCACCATAAACNNNNNNNNNNNNNNNNNTCTGAAATTACATCATGTATTAATGATCATATAAACTATGGCTTATCTTTAGCCAACCCACCAAAATATAAGGAGACGATCATAAAGAATATATGTACACATCATGCAGCTGATAAACACAAATGTTTCGAAACTATAGAATCAATAATGACATTTCTACTTGAAATTACTATCTAAAATAACATACTGAATTCTGAAACTGTCACTTCTTTGATAAATAATACAGTAAAATATA]
[+] EMBL CD080887 [TCGCAGGCCANAATTCTGCACGAGGGCGAAAAATAAAAATGATATTGAAACAATTTTTCATTCTAATTGTTATATTGGATGTAAGTGAAGTGACTTTTGGAAATGAAGAGAATATATACTCTGAACAATTAGAAAGACCACAATGTCATCTCTTATGCGGACTTTGTAGACGTATAGGAAGACTGATAAAAATATTCCTTGAAGATGAACCATTCATCCCATTAACTTATTAATTCCTGAAAGGCATTGGAGAAATGAGTGTCTAGATATTACACATTATTTACCGAGGAAAATTCATGAATTCGCTGATCATATAAATGTAACTTTGGAATGTTCTGAACTAGGGTTCTGTCACCATAAACNNNNNNNNNNNNNNNNNTCTGAAATTACATCATGTATTAATGATCATATAAACTATGGCTTATCTTTAGCCAACCCACCAAAATATAAGGAGACGATCATAAAGAATATATGTACACATCATGCAGCTGATAAACACAAATGTTTCGAAACTATAGAATCAATAATGACATTTCTACTTGAAATTACTATCTAAAATAACATACTGAATTCTGAAACTGTCACTTCTTTGATAAATAATACAGTAAAATATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11001#0 CCTCGNAGGCCAGAATTCGGCACGAGGGCGAAAAATAAAAATGATATTGAAACAATTTTT 60
consensus_11001#2 --TCGCAGGCCANAATTCTGCACGAGGGCGAAAAATAAAAATGATATTGAAACAATTTTT 58
consensus_11001#1 ------------CAAACAAACGAACAAACGAAAAATAAAAATGATATTGAAACAATTTTT 48
** * ********************************
consensus_11001#0 CATTCTAATTGTTATATTGGATGTAAGTGAAGTGACTTTTGGAAATGAAGAGAATATATA 120
consensus_11001#2 CATTCTAATTGTTATATTGGATGTAAGTGAAGTGACTTTTGGAAATGAAGAGAATATATA 118
consensus_11001#1 CATTCTAATTGTTATATTGGATGTAAGTGAAGTGACTTTTGGAAATGAAGAGAATATATA 108
************************************************************
consensus_11001#0 CTCTGAACAATTAGAAAGACCACAATGTCATCTCTTATGCGGACTTTGTAGACGTATAGG 180
consensus_11001#2 CTCTGAACAATTAGAAAGACCACAATGTCATCTCTTATGCGGACTTTGTAGACGTATAGG 178
consensus_11001#1 CTCTGAACAATTAGAAAGACCACAATGTCATCTCTTATGCGGACTTTGTAGACGTATAGG 168
************************************************************
consensus_11001#0 AAGACTGATAAAAATATTCCTTGAAGATGAACCATTCATCCCATTAACTTCAAGAGTATT 240
consensus_11001#2 AAGACTGATAAAAATATTCCTTGAAGATGAACCATTCATCCCATTAACTT---------- 228
consensus_11001#1 AAGACTGATAAAAATATTCCTTGAAGATGAACCATTCATCCCATTAACTTCAAGAGTATT 228
**************************************************
consensus_11001#0 ATATCAGATGTGCAAATTAATTCCTGAAAGGCATTGGAGAAATGAGTGTCTAGATATTAC 300
consensus_11001#2 ---------------ATTAATTCCTGAAAGGCATTGGAGAAATGAGTGTCTAGATATTAC 273
consensus_11001#1 ATATCAGATGTGCAAATTAATTCCTGAAAGGCATTGGAGAAATGAGTGTCTAGATATTAC 288
*********************************************
consensus_11001#0 ACATTATTTACCGAGGAAAATTCATGAATTCGCTGATCATATAAATGTAACTTTGGAATG 360
consensus_11001#2 ACATTATTTACCGAGGAAAATTCATGAATTCGCTGATCATATAAATGTAACTTTGGAATG 333
consensus_11001#1 ACATTATTTACCGAGGAAAATTCATGAATTCGCTGATCATATAAATGTAACTTTGGAATG 348
************************************************************
consensus_11001#0 TTCTGAACTAGGGTTCTGTCACCATAAACACACAATGCTATCAAATTCTGAAATTACATC 420
consensus_11001#2 TTCTGAACTAGGGTTCTGTCACCATAAACNNNNNNNNNNNNNNNNNTCTGAAATTACATC 393
consensus_11001#1 TTCTGAACTAGGGTTCTGTCACCATAAACACACAATGCTATCAAATTCTGAAATTACATC 408
***************************** **************
consensus_11001#0 ATGTATTAATGATCATATAAACTATGGCTTATCTTTAGCCAACCCACCAAAATATAAGGA 480
consensus_11001#2 ATGTATTAATGATCATATAAACTATGGCTTATCTTTAGCCAACCCACCAAAATATAAGGA 453
consensus_11001#1 ATGTATTAATGATCATATAAACTATGGCTTATCTTTAGCCAACTCACCAAAATATAAGGA 468
******************************************* ****************
consensus_11001#0 GACGATCATAAAGAATATATGTACACATCATGCAGCTGATAAACACAAATGTTTCGAAAC 540
consensus_11001#2 GACGATCATAAAGAATATATGTACACATCATGCAGCTGATAAACACAAATGTTTCGAAAC 513
consensus_11001#1 GACGATCATAAAGAATATATGTACACATCATGCAGCTGATAAACACAAATGTTTCGAAAC 528
************************************************************
consensus_11001#0 TATAGAATCAATAATGACATTTCTACTTGAAATTACTATCTAAAATAACATACTGAATTC 600
consensus_11001#2 TATAGAATCAATAATGACATTTCTACTTGAAATTACTATCTAAAATAACATACTGAATTC 573
consensus_11001#1 TATAGAATCAATAATAACATTTCTACTTGAAATTACTATCTAAAATAACATACTGAATTC 588
*************** ********************************************
consensus_11001#0 TGAAACTGTCACTTCTTTGATAAATAATACAGTAAAATATAATATAAATTGAAAATAAAA 660
consensus_11001#2 TGAAACTGTCACTTCTTTGATAAATAATACAGTAAAATATA------------------- 614
consensus_11001#1 TGAAACTGTCACTTCTTTGATAAATAATACAGTAAAATATAATATAAATTGAANNTNN-- 646
*****************************************
consensus_11001#0 AAAATAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA 716
consensus_11001#2 --------------------------------------------------------
consensus_11001#1 --------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||