These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11006#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1439 fasta sequence [ACGCGCACACTGCTAATCAGCACGTTGGGGTTTGACAGTCCTATATTCATTTGCCAAAAGTAGTTGTTCAGGCGAATCGTAGACCTATACTTCAAACATGCCGAAACCCCCGTTTAAAGTTGCCGACATCAGTTTAGCAGATTGGGGTAGAAAGGAAATCAAGTTAGCAGAGAATGAAATGCCAGGGCTTATTATGATGAGGCAAATGTATGGCAAAGAAAAGCCACTCACTGGAGCTAGAATTGCTGGATGTCTTCATATGACTGTTCAGACTGCAGTTTTAATTGAAACTTTAGTCGAACTGGGAGCATCGGTTCAATGGTCATCCTGCAACATTTTTAGCACACAAGATCATGCTGCTGCAGCCATTGCAAAGACAGGCGTTCCAGTTTACGCGTGGAAAGGTGAAACCGAGGAGGAGTACACTTGGTGTATAGAGCAAACTTTAATATTTCCCGATGGTTTACCTTTAAACATGGTGTTAGACGATGGAGGTGATCTCACAGCTCTTGTTCATGAAAAACATCCTGAATATCTTGAAGGCATAAAAGGCGTTACAGAAGAAACTACAACTGGTGTTCGGAATCTTTATAAGATGTTTTCCAGTGGTCGACTGAAATGTCCTGCCATCAACGTTAATGACTCTGTTACTAAGAGTAAATTCGACAATCTCTATGGTTGCCGTGAATCGTTGGTGGATGGATTAAAAAGAGCCACTGACATCATGCTTGCAGGAAAAGTAGCATTAGTTGCAGGTTATGGAGATGTTGGTAAAGGATGTTCCCAAGCTCTTCGTTCTTATGGTGCGCGTGTACTTATTACGGAAGCCGATCCAATCAATGCTTTACAGGCTGTTATGGAAGGTTACGAAGTAACCACAATGGAAGATGGTGCGAAAAGAGCGAAGATATTTGTTACTGCCACTGGTTGTGTGGATATCATTACTGGTGAGCATTTCTCAGAAATGATGGACGATGCGATTGTCTGTAATATTGGCCACTTTGATACTGAAGTCGATGTTAAGTGGCTCAATGAGAATTGTGTCAGTATAGAATCAATCAAACCTCAAGTTGATCGTTACACATTAAAAAATGGAAGACATATTATTCTACTTGCAGAAGGTCGCCTAGTAAATCTAGGCTGTGCTCATGGCCATCCTAGTTTCGTAATGTCAAACTCTNTCACANATCANGTACTAGCACNAATTGAGCTATGGACANAACCCGATCAGTATCCCAGTTGGCGTCCATTTNCCTCCTAAAAAGCTGATGAAGCTGNTGCTGNCGCTCACTTGNAACAGNNTAGTGTCAAACTACGAATTNACCANNACAGCTGATATCTGGGTGTCCAGTGAGGACATTCAGGGCGACATATNATTTAATTNAGCNNNCTATTGAAATNCTACCATCTATGATCTAATTATGACTGTTTACTCAAAT] [-] EMBL CD162850 [ACGCGCACACTGCTAATCAGCACGTTGGGGTTTGACAGTCCTATATTCATTTGCCAAAAGTAGTTGTTCAGGCGAATCGTAGACCTATACTTCAAACATGCCGAAACCCCCGTTTAAAGTTGCCGACATCAGTTTAGCAGATTGGGGTAGAAAGGAAATCAAGTTAGCAGAGAATGAAATGCCAGGGCTTATTATGATGAGGCAAATGTATGGCAAAGAAAAGCCACTCACTGGAGCTAGAATTGCTGGATGTCTTCATATGACTGTTCAGACTGCAGTTTTAATTGAAACTTTAGTCGAACTGGGAGCATCGGTTCAATGGTCATCCTGCAACATTTTTAGCACACAAGATCATGCTGCTGCAGCCATTGCAAAGACAGGCGTTCCAGTTTACGCGTGGAAAGGTGAAACCGAGGAGGAGTACACTTGGTGTATAGAGCAAACTTTAATATTTCCCGATGGTTTACCTTTAAACATGGTGTTAGACGATGGAGGTGATCTCACAGCTCTTGTTCATGAAAAACATCCTGAATATCTTGAAGGCATAAAAGGCGTTACAGAAG ] [+] EMBL BF936780 [ TAATCAGCACGTTGGGGTTTGACAGTCCTATATTCATTTGCCAAAAGTAGTTGTTCAGGCGAATCGTAGACCTATACTTCAAACATGCCGAAACCCCCGTTTAAAGTTGCCGACATCAGTTTAGCAGATTGGGGTAGAAAGGAAATCAAGTTAGCAGAGAATGAAATGCCAGGGCTTATTATGATGAGGCAAATGTATGGCAAAGAAAAGCCACTCACTGGAGCTAGAATTGCTGGATGTCTTCATATGACTGTTCAGACTGCAGTTTTAATTGAAACTTTAGTCGAACTGGGAGCATCGGTTCAATGGTCATCCTGCAACATTTTTAGCACACAAGATCATGCTGCTGCAGCCATTGCAAAGACAGGCGTTCCAGTTTACGCGTGGAAAGGTGAAACCGAGGAGGAGTACACTTGGTGTATAGAGCAAACTTTAATATTTCCCGATGGTTTACCTTTAAACATGGTGTTAGACGATGGAGGTGATCTCACAGCTCTTGTTCATGAAAAACATCCTGAATATCTTGAAGGCATAAAAGGCGTTACAGAAGAAACTACAACTGGTGTTCGGAATCTTTATAAGATGTTTTCCAGTGGTCGACTGAAATGTCCTGCCATCAACGTTAATGACTCTGTTACTAAGAGTAAATTCGACAATCTCTATGGTTGCCGTGAATCGTTGGTGGATGGATTAAAAAGAGCCACTGACATCATGCTTGCAGGAAAAGTAGCATTAGTTGCAAGGTATGGga ] [+] EMBL AI976197 [ TAATCAGCACGTTGGGGTTTGACAGTCCTATATTCATTTGCCAAAAGTAGTTGTTCAGGCGAATCGTAGACCTATACTTCAAACATGCCGAAACCCCCGTTTAAAGTTGCCGACATCAGTTTAGCAGATTGGGGTAGAAAGGAAATCAAGTTAGCAGAGAATGAAATGCCAGGGCTTATTATGATGAGGCAAATGTATGGCAAAGAAAAGCCACTCACTGGAGCTAGAATTGCTGGATGTCTTCATATGACTGTTCAGACTGCAGTTTTAATTGAAACTTTAGTCGAACTGGGAGCATCGGTTCAATGGTCATCCTGCAACATTTTTAGCACACAAGATCATGCTGCTGCAGCCATTGCAAAGACAGGCGTTCCAGTTTACGCGTGGAAAGGTGAAACCGATGAGGAGTACACTTGGTGTATAGAGCAAACTTTAATATTTCCCGATGGTTTACCTTTAAACATGGTGTTAGACGATGGAGGTGATCTCACAGCTCTTGTTCATGATAAACATCCTGAATATCTTGAAGGCATAA ] [-] EMBL CD140109 [ TGGGGTTTGACAGTCCTATATTCATTTGCCAAAAGTAGTTGTTCAGGCGAATCGTAGACCTATACTTCAAACATGCCGAAACCCCCGTTTAAAGTTGCCGACATCAGTTTAGCAGATTGGGGTAGAAAGGAAATCAAGTTAGCAGAGAATGAAATGCCAGGGCTTATTATGATGAGACAAATGTATGGCAAAGAAAAGCCACTCACTGGAGCTAGAATTGCTAGATGTCTTCATATGACTGTTCAGACTGCAGTTTTAATTGAAACTTTAGTCGAACTGGGAGCATCGGTTCAATGGTCATCCTGCAACA ] [-] EMBL CD162940 [ AGACCTATACTTCAAACATGCCGAAACCCCCGTTTAAAGTTGCCGACATCAGTTTAGCAGATTGGGGTAGAAAGGAAATCAAGTTAGCAGAGAATGAAATGCCAGGGCTTATTATGATGAGGCAAATGTATGGCAAAGAAAAGCCACTCACTGGAGCTAGAATTGCTGGATGTCTTCATATGACTGTTCAGACTGCAGTTTTAATTGAAACTTTAGTCGAACTGGGAGCATCGGTTCAATGGTCATCCTGCAACATTTTTAGCACACAAGATCATGCTGCTGCAGCCATTGCAAAGACAGGCGTTCCAGTTTACGCGTGGAAAGGTGAAACCGAGGAGGAGTACACTTGGTGTATAGAGCAAACTTTAATATTTCCCGATGGTTTACCTTTAAACATGGTGTTAGACGATGGAGGTGATCTCACAGCTCTTGTTCATGAAAAACATCCTGAATATCTTGAAGGCATAAAAGGCGTTACAGAAG ] [-] EMBL CD094713 [ TATTATGATGAGGCAAATGTATGGCAAAGAAAAGCCACTCACTGGAGCTAGAATTGCTGGATGTCTTCATATGACTGTTCAGACTGCAGTTTTAATTGAAACTTTAGTCGAACTGGGAGCATCGGTTCAATGGTCATCCTGCAACATTTTTAGCACACAAGATCATGCTGCTGCAGCCATTGCAAAGACAGGCGTTCCAGTTTACGCGTGGAAAGGTGAAACCGAGGAGGAGTACACTTGGTGTATAGAGCAAACTTTAATATTTCCCGATGGTTTACCTTTAAACATGGTGTTAGACGATGGAGGTGATCTCACAGCTCTTGTTCATGAAAAACGTCCTGAATATCTTGAAGGCATAAAAGGCGTTACAGAAGAAACTACAACTGGTGTTCGGAATCTTTATAAGATGTTTTCCAGTGGCCGACTGAAATGTCCTGCCATCAACGTTAATGACTCTGTTACTAAGAGTAAATTCGACAATCTCTATGGTTGCCGTGAATCGTTGGTGGATGGATTAAAAAGAGCCACTGA ] [+] EMBL CD079822 [ GGAGGTGATCTCACAGCTCTTGTTCATGAAAAACATCCTGAATATCTTGAAGGCATAAAAGGCGTTACAGAAGAAACTACAACTGGTGTTCGGAATCTTTATAAGATGTTTTCCAGTGGTCGACTGAAATGTCCTGCCATCAACGTTAATGACTCTGTTACTAAGAGTAAATTCGACAATCTCTATGGTTGCCGTGAATCGTTGGTGGATGGATTAAAAAGAGCCACTGACATCATGCTTGCAGGAAAAGTAGCATTAGTTGCAGGTTATGGAGATGTTGGTAAAGGATGTTCCCAAGCTCTTCGTTCTTATGGTGCGCGTGTACTTATTACGGAAGCCGATCCAATCAATGCTTTACAGGCTGTTATGGAAGGTTACGAAGTAACCACAATGGAAGATGGTGCGAAAAGAGCGAAGATATTTGTTACTGCCACTGGTTGTGTGGATATCATTACTGGTGAGCATTTCTCAGAAATGATGGACGATGCGATTGTCTGTAATATTGGCCACTTTGATACTGAAGTCGATGTTAAGTGGCTCAATGAGAATTGTGTCAGTATAGAATCAATCAAACCTCAAGTTGATCGTTACACATTAAAAAATGGAAGACATATTATTCTACTTGCAGAAGGTCGCCTAGTAAATCTAGGCTGTGCTCATGGCCATCCTAGTTTCGTAATGTCAAACTCTNTCACANATCANGTACTAGCACNAATTGAGCTATGGACANAACCCGATCAGTATCCCAGTTGGCGTCCATTTNCCTCCTAAAAAGCTGATGAAGCTGNTGCTGNCGCTCACTTGNAACAGNNTAGTGTCAAACTACGAATTNACCANNACAGCTGATATCTGGGTGTCCAGTGAGGACATTCAGGGCGACATATNATTTAATTNAGCNNNCTATTGAAATNCTACCATCTATGATCTAATTATGACTGTTTACTCAAAT] [+] EMBL CD083799 [ cgagGGCGTTACAGAAGAAACTACAACTGGTG TCGGAATCTTTAT AGATGTTTTCCAGTGGTCGACTGAAATGTCCTGCCATCAACGTTAATGACTCTGTTACTAAGAGTAAATTCGACAATCTCTATGGTTGCCGTGAATCGTTGGTGGATGGATTAAAAAGAGCCACTGACATCATGCTTGCAGGAAAAGTAGCATTAGTTGCAGGTTATGGAGATGTTGGTAAAGGATGTTCCCAAGCTCTTCGTTCTTATGGTGCGCGTGTACTTATTACGGAAGCCGATCCAATCAATGCTTTACAGGCTGTTATGGAAGGTTACGAAGTAACCACAATGGAAGATGGTGCGAAAAGAGCGAAGATATTTGTTACTGCCACTGGTTGTGTGGATATCATTACTGGTGAGCATTTCTCAGAAATGATGGACGATGCGATTGTCTGTAATATTGGCCACTTTGATACTGAAGTCGATGTTAAGTGGCTCAATGAGAATT ] [+] EMBL CD165812 [ TTATAAGATGTTTTCCAGTGGTCGACTGAAATGTCCTGCCATCAACGTTAATGACTCTGTTACTAAGAGTAAATTCGACAATCTCTATGGTTGCCGTGAATCGTTGGTGGATGGATTAAAAAGAGCCACTGACATCATGCTTGCAGGAAAAGTAGCATTAGTTGCAGGTTATGGAGATGTTGGTAAAGGATGTTCCCAAGCTCTTCGTTCTTATGGTGCGCGTGTACTTATTACGGAAGCCGATCCAATCAATGCTTTACAGGCTGTTATGGAAGGTTACGAAGTAACCACAATGGAAGATGGTGCGAAAAGAGCGAAGATATTTGTTACTGCCACTGGTTGTGTGGATATCATTACTGGTGAGCATTTCTCAGAAATGATGGACGATGCGATTGTCTGTAATATTGGCCACTTTGATACTGAAG ] [-] EMBL CD087006 [ AAGATGTTTTCCAGTGGTCGACTGAAATGTCCTGCCATCAACGTTAATGACTCTGTTACTAAGAGTAAATTCGACAATCTCTATGGTTGCCGTGAATCGTTGGTGGATGGATTAAAAAGAGCCACTGACATCATGCTTGCAGGAAAAGTAGCATTAGTTGCAGGTTATGGAGATGTTGGTAAAGGATGTTCCCAAGCTCTTCGTTCTTATGGTGCGCGTGTACTTATTACGGAAGCCGATCCAATCAATGCTTTACGGGCTGTTATGGAAGGTTACGAAGTAACCACAATGGAAGATGGTGCGAAAAGAGCGAAGATAT ] consensusID : consensus_11006#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 596 fasta sequence [CGTTCCAGTTTACGCGTGGAAAGGTGAAACCGAGGAGGAGTACACTTGGTGTATAGAGCAAGTATATGACCTATACCATAAATATAATCTAAGACTTTAATATTTCCCGATGGTTTACCTTTAAACATGGTGTTAGTGGGAGGAGGTGATCTCACAGCTCTTGTTCATGAAAAACATCCTGAATATCTTGAAGGCATAAAAGGCGTTACAGAAGAAACTACAACTGGTGTTCGGAATCTTTATAAGATGTTTTCCAGTGGTCGACTGAAATGTCCTGCCATCAACGTTAATGACTCTGTTACTAAGAGTAAATTCGACAATCTCTATGGTTGCCGTGAATCGTTGGTGGATGGATTAAAAAGAGCCACTGACATCATGCTTGCAGGAAAAGTAGCATTAGTTGCAGGTTATGGAGATGTTGGTAAAGGATGTTCCCAAGCTCTTCGTTCTTATGGTGCGCGTGTACTTATTACGGAAGCCGATCCAATCAATGCTTTACAGGCTGTTATGGAAGGTTACGAAGTAACCACAATGGAAGATGGTGATCTCACAGCTCTTGTTCATGAAAAACATCCTGAATATCTTGAAGGCATAAA] [+] EMBL CD146067 [CGTTCCAGTTTACGCGTGGAAAGGTGAAACCGAGGAGGAGTACACTTGGTGTATAGAGCAAGTATATGACCTATACCATAAATATAATCTAAGACTTTAATATTTCCCGATGGTTTACCTTTAAACATGGTGTTAGACGATGGAGGTGATCTCACAGCTCTTGTTCATGAAAAACATCCTGAATATCTTGAAGGCATAAAAGGCGTTACAGAAGAAACTACAACTGGTGTTCGGAATCTTTATAAGATGTTTTCCAGTGGTCGACTGAAATGTCCTGCCATCAACGTTAATGACTCTGTTACTAAGAGTAAATTCGACAATCTCTATGGTTGCCGTGAATCGTTGGTGGATGG ] [+] EMBL CD188465 [ TGGGAGGAGGTGATCTCACAGCTCTTGTTCATGAAAAACATCCTGAATATCTTGAAGGCATAAAAGGCGTTACAGAAGAAACTACAACTGGTGTTCGGAATCTTTATAAGATGTTTTCCAGTGGTCGACTGAAATGTCCTGCCATCAACGTTAATGACTCTGTTACTAAGAGTAAATTCGACAATCTCTATGGTTGCCGTGAATCGTTGGTGGATGGATTAAAAAGAGCCACTGAC ] [+] EMBL CD188453 [ TGGGAGGAGGTGATCTCACAGCTCTTGTTCATGAAAAACATCCTGAATATCTTGAAGGCATAAAAGGCGTTACAGAAGAAACTACAACTGGTGTTCGGAATCTTTATAAGATGTTTTCCAGTGGTCGACTGAAATGTCCTGCCATCAACGTTAATGACTCTGTTACTAAGAGTAAATTCGACAATCTCTATGGTTGCCGTGAATCGTTGGTGGATGGATTAAAAAGAGCCACTGAC ] [-] EMBL CD113954 [ TTGAAGGCATAAAAGGCGTTACAGAAGAAACTACAACTGGTGTTCGGAATCTTTATAAGATGTTTTCCAGTGGTCGACTGAAATGTCCTGCCATCAACGTTAATGACTCTGTTACTAAGAGTAAATTCGACAATCTCTATGGTTGCCGTGAATCGTTGGTGGATGGATTAAAAAGAGCCACTGACATCATGCTTGCAGGAAAAGTAGCATTAGTTGCAGGTTATGGAGATGTTGGTAAAGGATGTTCCCAAGCTCTTCGTTCTTATGGTGCGCGTGTACTTATTACGGAAGCCGATCCAATCAATGCTTTACAGGCTGTTATGGAAGGTTACGAAGTAACCACAATGGAAGATGGTGATCTCACAGCTCTTGTTCATGAAAAACATCCTGAATATCTTGAAGGCATAAA] [-] EMBL CD113943 [ TTGAAGGCATAAAAGGCGTTACAGAAGAAACTACAANTGGTGTTCGGAATCTTTATAAGATGTTTTCCAGTGGTNGANTGAAATGTCNNGCCATn ] consensusID : consensus_11006#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 567 fasta sequence [TGTTACTGCCACTGGTTGTGTGGATATCATTACTGGTGAGCATTTCTCAGAAATGATGGACGATGCGATTGTCTGTAATATTGGCCACTTTGATACTGAAGTCGATGTTAAGTGGCTCAATGAGAATTGTGTCAGTATAGAATCAATCAAACCTCAAGTTGATCGTTACACATTAAAAAATGGAAGACATATTATTCTACTTGCAGAAGGTCGCCTAGTAAATCTAGGCTGTGCTCATGGCCATCCTAGTTTCGTAATGTCAAACTCTTTCACAAATCAGGTACTAGCACAAATTGAGCTATGGACAAAACCCGATCAGTATCCAGTTGGCGTCCATTTCCTCCCTAAAAAGCTGGATGAGGCTGTTGCTGCCGCTCACTTGGAACAGTTAGGTGTCAAACTAACGAAATTAACCAAAAAACAAGCTGATTATCTGGGTG-TACCAGTTGAAGGACCATTC-AAGG-CGGAACATTATAGATATTAAATTTAAGCTACTTAATTTGTAAAATACTATACCAATCTATATGAATCATAATCTAATGAACTGTTATTACTCAAAAATAAAGA] [-] EMBL CD076592 [TGTTACTGCCACTGGTTGTGTGGATATCATTACTGGTGAGCATTTCTCAGAAATGATGGACGATGCGATTGTCTGTAATATTGGCCACTTTGATACTGAAGTCGATGTTAAGTGGCTCAATGAGAATTGTGTCAGTATAGAATCAATCAAACCTCAAGTTGATCGTTACACATTAAAAAATGGAAGACATATTATTCTACTTGCAGAAGGTCGCCTAGTAAATCTAGGCTGTGCTCATGGCCATCCTAGTTTCGTAATGTCAAACTCTTTCACAAATCAGGTACTAGCACAAATTGAGCTATGGACAAAACCCGATCAGTATCCAGTTGGCGTCCATTTCCTCCCTAAAAAGCTGGATGAGGCTGTTGCTGCCGCTCACTTGGAACAGTTATGTGTCAAACTAACGAAATTAACCAAAAAACAAGCTGATTATTTGGGTG TACCAGTTGAAGGACCATTC AAGG CGGAACATTATAGATATTAAATTTAAGCTACTTAATTTGTAAAATACTATACCAATCTATATGAATCATAATTTAATGAACTGTTATTACTCAAAAATAAAGA] [-] EMBL CD165826 [ TGCCACTGGTTGTGTGGATATCATTACTGGTGAGCATTTCTCAGAAATGATGGACGATGCGATTGTCTGTAATATTGGCCACTTTGATACTGAAGTCGATGTTAAGTGGCTCAATGAGAATTGTGTCAGTATGGAATCAATCAAACCTCAAGTTGATCGTTACACATTAAAAAATGGAAGACATATTATTCTACTTGCAGAAGGTCGCCTAGTAAATCTAGGCTGTGCTCATGGCCATCCTAGTTTCGTAATGTCAAACTCTTTCACAAATCAGGTACTAGCACAAATTGAGCTATGGACAAAACCCGATCAGTATCCAGTTGGCGCCCATTTCCTCCCTAAAAAGCTGGATGAGGCTGTTGCTGCCGCTCACTTGGAACAGTTAGGTGTCAAACTAACGAAATTAACCAAAAAACAAGCTGATTATCTGGGTG TACCAGTTGAAGGA ] [-] EMBL CD074080 [ TCAGAAATGATGGACGATGCGATTGTCTGTAATATTGGCCACTTTGATACTGAAGTCGATGTTAAGTGGCTCAATGAGAATTGTGTCAGTATAGAATCAATCAAACCTCAAGTTGATCGTTACCCATTAAAAAATGGAAGACATATTATTTTACTTGCAGAAGGTCGCCTAGTAAATTTAGGCTGTGGTCATGGCCATCCTAGTTTTGTAATGTCAAACTTTTTCACAAATCAGGTACTAGCACAAATTGAGCTATGGACAAAACCCGATCAGTATCCAGTTGGGGTCCATTTCCTCCCTAAAAAACTGGATGAGGCTGTTGCTGCCGCTCACTTGGAACAGTTAGGTGTCAAACTAACGAAATTAACCAAAAAACAAGCTGATTATTTGGGTG TACCAGTTGAAGGACCATTC AAGG CGGAACATTATAGATATTAAATTTAAGCTACTTAATTTGTAAAATACTATACCAATTTATATGAATCATAATTTAATGAACTGTTATTACTCAAAAATAAAGA] [-] EMBL CD077003 [ tccCATTAAAAAATGGAAGACATATTATTTTACTTGCAGAAGGTCGCCTAGTAAATTTAGGCTGTGGTCATGGCCATCCTAGTTTCGTAATGTCAAACTCTTTCCCAAATCAGGTACTAGCCCAAATTGAGCTATGGACAAAACCCGATCAGTATCCAGTTGGCGTCCATTTCCTCCCTAAAAAGCTGGATGAGGCTGTTGCTGCCGCTCACTTGGAACAGTTAGGTGTCAAACTAACGAAATTAACCAAAAAACAAGCTGATTATTTGGGTG TACCAGTTGAAGGACCATTC AAGG CGGAACATTATAGATATTAAATTTAAGCTACTTAATTTGTAAAATACTATACCCATCTATATGAATCATAATTTAATGAACTGTTATTACTCAAAAATAAAGA] [-] EMBL AI067807 [ TTAAAAAATGGAAGACATATTATTCTACTTGCAGAAGGTCGCCTAGTAAATCTAGGCTGTGCTCATGGCCATCCTAGTTTCGTAATGTCAAACTCTTTCACAAATCAGGTACTAGCACAAATTGAGCTATGGACAAAACCCGATCAGTATCCAGTTGGCGTCCATTTCCTCCCTAAAAAGCTGGATGAGGCTGTTGCTGCCGCTCACTTGGAACAGTTAGGTGTCAAACTAACGAAATTAACCAAAAAACAAGCTGATTATCTGGGTG TACCAGTTGAAGGACCATTC AAGG CGGAACATTATAGATATTAAATTTAAGCTACTTAATTTGTAAAATACTATACCAATCTATATGAATCATAATCTAATGAACTGTTATTAC ] [+] EMBL SMAA25636 [ GGTCGCCTAGTAAATCTAGGCTGTGCTCATGGCCATCCTAGTTTCGTAATGTCAAACTCTTTCACAAATCAGGTACTAGCACAAATTGAGCTATGGAC AAACCCGATCAGTATCCAGTTGGCGTCCATTTCCTCCCTAAAAAGCTGGATGAGGCTGTTGCTGCCGCTCACTTGGAACAGTTAGGTGTC AACTAACGAAATTAACCCAAAAACAGGCTGATTATCTGGGTGCTACCAGTTGAAGGACCATTCAAAGGCCGGAACATTATAGATATTAAATTTAAGCTACTTAATT ] [-] EMBL AI067612 [ GCCTAGTAAATCTAGGCTGTGCTCATGGCCATCCTAGTTTCGTAATGTCAAACTCTTTCACAAATCAGGTACTAGCACAAATTGAGCTATGGACAAAACCCGATCAGTATCCAGTTGGCGTCCATTTCCTCCCTAAAAAGCTGGATGAGGCTGTTGCTGCCGCTCACTTGGAACAGTTAGGTGTCAAACTAACGAAATTAACCAAAAAACAAGCTGATTATCTGGGTG TACCAGTTGAAGGACCATTC AAGG CGGAACATTATAGATATTAAATTTAAGCTACTTAATTTGTAAAATACTGTACCAATCTGTATGAATCCTAATCTAATGAACTG ] [-] EMBL AI067855 [ TCTAGGCTGTGCTCATGGCCATCCTAGTTTCGTAATGTCAAACTCTTTCACAAATCAGGTACTAGCACAAATTGAGCTATGGACAAAACCCGATCAGTATCCAGTTGGCGTCCATTTCCTCCCTAAAAAGCTGGATGAGGCTGTTGCTGCCGCTCACTTGGAACAGTTAGGTGTCAAACTAACGAAATTAACCAAAAAACAAGCTGATTATCTGGGTG TACCAGTTGAAGGACCATTC AAGG CGGAACATTATAGATATTAAATTTAAGCTACTTAATTTGTAAAATACTATACCAATCTATATGAATCATAATCTAATGAACTG ] [-] EMBL AI068081 [ AGGCTGTGCTCATGGCCATCCTAGTTTCGTAATGTCAAACTCTTTCACAAATCAGGTACTAGCACAAATTGAGCTATGGACAAAACCCGATCAGTATCCAGTTGGCGTCCATTTCCTCCCTAAAAAGCTGGATGAGGCTGTTGCTGCCGCTCACTTGGAACAGTTAGGTGTCAAACTAACGAAATTAACCAAAAAACAAGCTGATTATCTGGGTG TACCAGTTGAAGGACCATTC AAGG CGGAACATTATAGATATTAAATTTAAGCTACTTAATTTGTAAAATACTATACCAATCTATATGAATCATAATCTAATGAACTG ] [+] EMBL CD136421 [ AGGCTGTGCTCATGGCCATCCTAGTTTCGTAATGTCAAACTCTTTCACAAATCAGGTACTAGCACAAGTTGAGCTATGGACAAAACCCGATCAGTATCCAGTTGGCGTCCATTTTCTCCCTAAAAAGCTGGATGAGGCTATTGCTGCC ] [+] EMBL CD136247 [ AGGCTGTGCTCATGGCCATCCTAGTTTCGTAATGTCAAACTCTTTCACAAATCAGGTACTAGCACAAATTGGGCTATGGACAAAACCCGATCAGTATCCAGTGGGCGTCCATTTCCTCCCTAAAAAGCTGGATG ] [+] EMBL CD136314 [ AGGCTGTGCTCATGGCCATCCCAGTTTCGTAATGTCAAACTCTTTCACAAATCAGGTACTAGCACAAATTGAGCTATGGACAAAACCCGATCAGTATCCAGTTGGCGTCCATTTCCTCCCTAAAAAGCTGGATG ] consensusID : consensus_11006#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence [CACGCGCACACTGCTAATCAGCACGTTGGTTCGTTTAGATTTGTATGGTACACCAGAAGTTCACTTTTTTCTTATTACGGACTCATTTCACAAGAAGAAAAATAGCATCTGATGTGTTTTATGTCATGTTATAACGTGTGGTTAGATCTAATGCGACATGCCCTTTGAAATGATTATTGGCGGTACTCTGTAAGATTTCTCCTTACTGGGTTTGACAGTCCTATATTCATTTGCCAAAAGTAGTTGTTCAGGCGAATCGTAGACCTATACTTCAAACATGCCGAAACCCCCGTTTAAAGTTGCCGACATCAGTTTAGCAGATTGGGGTAGAAAGGAAATCAAGTTAGCAGAG] [-] EMBL CD189576 [CACGCGCACACTGCTAATCAGCACGTTGGTTCGTTTAGATTTGTATGGTACACCAGAAGTTCACTTTTTTCTTATTACGGACTCATTTCACAAGAAGAAAAATAGCATCTGATGTGTTTTATGTCATGTTATAACGTGTGGTTAGATCTAATGCGACATGCCCTTTGAAATGATTATTGGCGGTACTCTGTAAGATTTCTCCTTACTGGGTTTGACAGTCCTATATTCATTTGCCAAAAGTAGTTGTTCAGGCGAATCGTAGACCTATACTTCAAACATGCCGAAACCCCCGTTTAAAGTTGCCGACATCAGTTTAGCAGATTGGGGTAGAAAGGAAATCAAGTTAGCAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11006#0 ACGCGCACACTGCTAATCAGCACGTTGGGGTTTGACAGTCCTATATTCATTTGCCAAAAG 60 consensus_11006#1 ------------------------------------------------------------ consensus_11006#2 ------------------------------------------------------------ consensus_11006#3 ------------------------------------------------------------ consensus_11006#0 TAGTTGTTCAGGCGAATCGTAGACCTATACTTCAAACATGCCGAAACCCCCGTTTAAAGT 120 consensus_11006#1 ------------------------------------------------------------ consensus_11006#2 ------------------------------------------------------------ consensus_11006#3 ------------------------------------------------------------ consensus_11006#0 TGCCGACATCAGTTTAGCAGATTGGGGTAGAAAGGAAATCAAGTTAGCAGAGAATGAAAT 180 consensus_11006#1 ------------------------------------------------------------ consensus_11006#2 ------------------------------------------------------------ consensus_11006#3 ------------------------------------------------------------ consensus_11006#0 GCCAGGGCTTATTATGATGAGGCAAATGTATGGCAAAGAAAAGCCACTCACTGGAGCTAG 240 consensus_11006#1 ------------------------------------------------------------ consensus_11006#2 ------------------------------------------------------------ consensus_11006#3 ------------------------------------------------------------ consensus_11006#0 AATTGCTGGATGTCTTCATATGACTGTTCAGACTGCAGTTTTAATTGAAACTTTAGTCGA 300 consensus_11006#1 ------------------------------------------------------------ consensus_11006#2 ------------------------------------------------------------ consensus_11006#3 ------------------------------------------------------------ consensus_11006#0 ACTGGGAGCATCGGTTCAATGGTCATCCTGCAACATTTTTAGCACACAAGATCATGCTGC 360 consensus_11006#1 ------------------------------------------------------------ consensus_11006#2 ------------------------------------------------------------ consensus_11006#3 ------------------------------------------------------------ consensus_11006#0 TGCAGCCATTGCAAAGACAGGCGTTCCAGTTTACGCGTGGAAAGGTGAAACCGAGGAGGA 420 consensus_11006#1 ---------------------CGTTCCAGTTTACGCGTGGAAAGGTGAAACCGAGGAGGA 39 consensus_11006#2 ---------------------TGTTACTGCCACTGGTTGTGTGGATATCATTACTGGTGA 39 consensus_11006#3 ------------------------------------------------------------ consensus_11006#0 GTACACTTGGTGTATAGAGCAA--------------------------------ACTTTA 448 consensus_11006#1 GTACACTTGGTGTATAGAGCAAGTATATGACCTATACCATAAATATAATCTAAGACTTTA 99 consensus_11006#2 GCATTTCTCAGAAATGATGGACG-ATGCGAT---TGTCTGTAATATTGGCC---ACTTTG 92 consensus_11006#3 ------------------------------------------------------------ consensus_11006#0 ATATTTC--CCGATGGTTTACCTTTAAACATGGTGTTAGACGATGGAGGTGATCTCACAG 506 consensus_11006#1 ATATTTC--CCGATGGTTTACCTTTAAACATGGTGTTAGTGGGAGGAGGTGATCTCACAG 157 consensus_11006#2 ATACTGAAGTCGATGTTAAGTGGCTCAATGAGAATTGTGTCAGTATAGAATCAATCAAAC 152 consensus_11006#3 -------------------------------------------------------CAC-G 4 ** consensus_11006#0 CTCTTGTTCATGAAAAACATCCTGAATATCTTGAAGGCATAAAAGGCG--TTACAGAAGA 564 consensus_11006#1 CTCTTGTTCATGAAAAACATCCTGAATATCTTGAAGGCATAAAAGGCG--TTACAGAAGA 215 consensus_11006#2 CTCAAGTTGATCGTTA-CACATTAAA-AAATGGAAGACATATTATTCTACTTGCAGAAGG 210 consensus_11006#3 CGCACACTGCTAATCAGCACGTTGGTTCGTTTAGATTTGTATGGTACA-CCAGAAGTTCA 63 * * * * * ** * * * ** * ** consensus_11006#0 AACTACAACTGGTGTTCGGAATCTTTATAAGATGTTTTCCAGTGGTCGAC---TGAAATG 621 consensus_11006#1 AACTACAACTGGTGTTCGGAATCTTTATAAGATGTTTTCCAGTGGTCGAC---TGAAATG 272 consensus_11006#2 TCGCCTAGTAAATCTAGGCTGTGCTCATGGC---CATCCTAGTTTCGTAA---TGTCAAA 264 consensus_11006#3 CTTTTTTCTTATTACGGACTCATTTCACAAGAAGAAAAATAGCATCTGATGTGTTTTATG 123 * * * ** * * * consensus_11006#0 TCCTGCCATCAAC--GTTAATGACTCTGTT---ACTAAGAGTAAATTCGACAATCTCT-- 674 consensus_11006#1 TCCTGCCATCAAC--GTTAATGACTCTGTT---ACTAAGAGTAAATTCGACAATCTCT-- 325 consensus_11006#2 CTCTTTCACAAATCAGGTACTAGCACAAATTGAGCTATGGACAAAACCCGATCAGTAT-- 322 consensus_11006#3 TCATGTTAT-AACGTGTGGTTAGATCTAAT---GCGACATGCCCTTTGAAATGATTATTG 179 * * ** * * * * * * * * consensus_11006#0 ATGGT-TGCCGTGAATCGT-TGGTGGATGGATTAAAAAGAGCCACTGACATCATGCTTGC 732 consensus_11006#1 ATGGT-TGCCGTGAATCGT-TGGTGGATGGATTAAAAAGAGCCACTGACATCATGCTTGC 383 consensus_11006#2 CCAGT-TGGCGTCCATTTCCTCCCTAAAAAGCTGGATGAGGCTGTTGCTGCCGCTCACTT 381 consensus_11006#3 GCGGTACTCTGTAAGATTTCTCCTTACTGGGTTTGACAGTCCTAT-------ATTCATTT 232 ** ** * * * * * consensus_11006#0 AGGAAAAGTAGCATTAGTTGCAGGTTATGGAGATGTTGGTAAAGGATGTTCCCAAGCTCT 792 consensus_11006#1 AGGAAAAGTAGCATTAGTTGCAGGTTATGGAGATGTTGGTAAAGGATGTTCCCAAGCTCT 443 consensus_11006#2 GGAACAGTTAG-----GTGTCAAACTAACGAAAT-TAACCAAAAAACAAGCTGATTATCT 435 consensus_11006#3 GCCAAAAGTAGTTGTTCAGGCGAATCGTAGACCTATACTTCAAACATG---CCGAAACCC 289 * * *** * ** * * ** * * consensus_11006#0 TCGTTCTTATGGTGCGCGTGTACTTATTACGGAAGCCGATCCA-ATCAATGCTTTACAGG 851 consensus_11006#1 TCGTTCTTATGGTGCGCGTGTACTTATTACGGAAGCCGATCCA-ATCAATGCTTTACAGG 502 consensus_11006#2 GGGTGTACCAGTTGAAGGACCATTCAAGGCGGAACATTATAGATATTAAATTTAAGCTAC 495 consensus_11006#3 CCGTTTA-AAGTTGCCGACATCAGTTTAGCAGATTGGGGTAGA-AAGGAAATCAAGTTAG 347 ** * ** * ** * * * * consensus_11006#0 CTGTTATGGAAGGTTACGAAGTAACCACAATGGAAGATGGTGCGAAAAG-AGCGAAGATA 910 consensus_11006#1 CTGTTATGGAAGGTTACGAAGTAACCACAATGGAAGATGGTGATCTCAC-AGCTCTTGTT 561 consensus_11006#2 TTAATTTGTAAAATACTATACCAATCTATATGA---ATCATAATCTAATGAACTGTTATT 552 consensus_11006#3 CAGAG------------------------------------------------------- 352 consensus_11006#0 TTTGTTACTGCCACTGGTTGTGTGGATATCATTACTGGTGAGCATTTCTCAGAAATGATG 970 consensus_11006#1 CATGAAAAACATCCTGAATATCTTGAAGGCATAAA------------------------- 596 consensus_11006#2 ACTCAAAAATAAAGA--------------------------------------------- 567 consensus_11006#3 ------------------------------------------------------------ consensus_11006#0 GACGATGCGATTGTCTGTAATATTGGCCACTTTGATACTGAAGTCGATGTTAAGTGGCTC 1030 consensus_11006#1 ------------------------------------------------------------ consensus_11006#2 ------------------------------------------------------------ consensus_11006#3 ------------------------------------------------------------ consensus_11006#0 AATGAGAATTGTGTCAGTATAGAATCAATCAAACCTCAAGTTGATCGTTACACATTAAAA 1090 consensus_11006#1 ------------------------------------------------------------ consensus_11006#2 ------------------------------------------------------------ consensus_11006#3 ------------------------------------------------------------ consensus_11006#0 AATGGAAGACATATTATTCTACTTGCAGAAGGTCGCCTAGTAAATCTAGGCTGTGCTCAT 1150 consensus_11006#1 ------------------------------------------------------------ consensus_11006#2 ------------------------------------------------------------ consensus_11006#3 ------------------------------------------------------------ consensus_11006#0 GGCCATCCTAGTTTCGTAATGTCAAACTCTNTCACANATCANGTACTAGCACNAATTGAG 1210 consensus_11006#1 ------------------------------------------------------------ consensus_11006#2 ------------------------------------------------------------ consensus_11006#3 ------------------------------------------------------------ consensus_11006#0 CTATGGACANAACCCGATCAGTATCCCAGTTGGCGTCCATTTNCCTCCTAAAAAGCTGAT 1270 consensus_11006#1 ------------------------------------------------------------ consensus_11006#2 ------------------------------------------------------------ consensus_11006#3 ------------------------------------------------------------ consensus_11006#0 GAAGCTGNTGCTGNCGCTCACTTGNAACAGNNTAGTGTCAAACTACGAATTNACCANNAC 1330 consensus_11006#1 ------------------------------------------------------------ consensus_11006#2 ------------------------------------------------------------ consensus_11006#3 ------------------------------------------------------------ consensus_11006#0 AGCTGATATCTGGGTGTCCAGTGAGGACATTCAGGGCGACATATNATTTAATTNAGCNNN 1390 consensus_11006#1 ------------------------------------------------------------ consensus_11006#2 ------------------------------------------------------------ consensus_11006#3 ------------------------------------------------------------ consensus_11006#0 CTATTGAAATNCTACCATCTATGATCTAATTATGACTGTTTACTCAAAT 1439 consensus_11006#1 ------------------------------------------------- consensus_11006#2 ------------------------------------------------- consensus_11006#3 ------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||