These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11012#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 831 fasta sequence [CTTCGGGCCAAAAATTCGGCACGAGGAGTCAATTCAAATGTAAACAACCAACATCGTGCGTCATTTCCAAATACCCTGTCACTCGACTTTCGTTCATTTCGTGGCACGTGTCTGTTTGATTCACTAGTATAAAAATGAAACAGATACATATCACTGTATCATTCGATAAATCATTCAACCGATCATTTCTACATCGAATCTAACACAATGAACAAGACAGTTTCCAAACATATATTCACCGAATCGAGAGCTAGACAGAATTTCGCCAAAGAATGTGAAGATGCCATCAATAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTTACTTCGATCGAGATGATGTATCA-TTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAATTTGGCGAAATATCAGAACAAACGTGGTGGGTCGTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATGCGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTATTGAAACTTCATGAAATAGCTGCAAAGAACAATGATCCAGCACTAACCGATTTCATTGAGAGTCAGTATTTGCATGAACAAGAAGATGCAATCAAACAATTTGCTGACTATGTGACAGAGACNATCGAAGTTGGAAGTGGACTTGGTCATATCTATTCGANCAGATGACACTNGAAGAATAACACGAATTCATTCAGTTGAACTGTTCATTCATTGGTATGTGCCCTATTTATCTCTGCATTCGTNTTTATCAGTAATGA] [+] EMBL CD080107 [CTTCGGGCCAAAAATTCGGCACGAGGAGTCAATTCAAATGTAAACAACCAACATCGTGCGTCATTTCCAAATACCCTGTCACTCGACTTTCGTTCATTTCGTGGCACGTGTCTGTTTGATTCACTAGTATAAAAATGAAACAGATACATATCACTGTATCATTCGATAAATCATTCAACCGATCATTTCTACATCGAATCTAACACAATGAACAAGACAGTTTCCAAACATATATTCACCGAATCGAGAGCTAGACAGAATTTCGCCAAAGAATGTGAAGATGCCATCAATAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTTACTTCGATCGAGATGATGTATCA TTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAATTTGGCGAAATATCAGAACAAACGTGGTGGGTCGTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATGCGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTATTGAAACTTCATGAAATAGCTGCAAAGAACAATGATCCAGCACTAACCGATTTCATTGAGAGTCAGTATTTGCATGAACAAGAAGATGCAATCAAACAATTTGCTGACTATGTGACAGAGACNATCGAAGTTGGAAGTGGACTTGGTCATATCTATTCGANCAGATGACACTNGAAGAATAACACGAATTCATTCAGTTGAACTGTTCATTCATTGGTATGTGCCCTATTTATCTCTGCATTCGTNTTTATCAGTAATGA] [+] EMBL CD077759 [ atTGAAACAGACACATATGACTGTATCATTCGATAAATCATTCAACCGATCATTTCTACATCGAATCTAACACAATGAACAAGACAGTTTCCAAACATATATTCACCGAATCGAGAGCTAGACAGAATTTCGCCAAAGAATGTGAAGATGCCATCAATAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTTACTTCGATCGAGATGATGTATCATTTTCCGAAAGCAGCTGAATTCT ] consensusID : consensus_11012#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 721 fasta sequence [GACGAGAAACTCCAGCAAACGATCTAGGAAA-CTAAAAAGACAGTAGTTTGAGTAGTTTGTTTAAGTTAGAAAAACTATGAGTTCATCAAGAGCCAGACAGAGTTTCGCCACAGAATGTGAAAATGCCATCAATAAACAAATCAATGTAGAACTACAAGCTGCTTACGATTATATGGCATTCTTTACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAAGTTGGCGAAATATCAGAACAAACGTGGT-GGTCGTGTTCAATACAGTGATATCAAGTGTCCGACTAAGACAGAATTCAGTAGTTTGGAAGATGCTATGAATACTGCCCTTGGAATGGAAAAAGCAGTCAGTAAATCATTATTAGAACTTCATGAAGTAGCTTCAAAGAACAATGATCCAGCATTGGCAGATTTTATTGAAAGTGAATTTCTTCATGAACAAGAAGATGCAATCAAACAATTCGCCGATTATTTAACCGAGACACAACGAGTCGGTAAAGGACTTGGAGAATATCTATTCGATAAATTAACATTAAATGAATAGAAAGATTCTAATTACCTATTATAAATGACACTACTAATTATCATGATTTCATTTGATACAGGATAGTTTGTTTTTAAAAATTATTATTTGTAAATATATCAAATATACTTCAGCAATATAATCATA] [+] EMBL SMFERB [GACGAGAAACTCCAGCAAACGATCTAGGAAA CTAAAAAGACAGTAGTTTGAGTAGTTTGTTTAAGTTAGAAAAACTATGAGTTCATCAAGAGCCAGACAGAGTTTCGCCACAGAATGTGAAAATGCCATCAATAAACAAATCAATGTAGAACTACAAGCTGCTTACGATTATATGGCATTCTTTACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAAGTTGGCGAAATATCAGAACAAACGTGTT GGTCGTGTTCAATACAGTGATATCAATGGTCCGACTAAGACAGAATTCAGTAGTTTGGAAGATGCTATGAATACTGCCCTTGGAATGGAAAAAGCAGTCAGTAAATCATTATTAGAACTTCATGAAGTAGCTTCAAAGAACAATGATCCAGCATTGGCAGATTTTATTGAAAGTGAATTTCTTCATGAACAAGAAGATGCAATCAAACAATTCGCCGATTATTTAACCGAGACACAACGAGTCGGTAAAGGACTTGGAGAATATCTATTCGATAAATTAACATTAAATGAATAGAAAGATTCTAATTACCTATTATAAATGACACTACTAATTATCATGATTTCATTTGATACAGGATAGTTTGTTTTTAAAAATTATTATTTGTAAATATATCAAATATACTTCAGCAATATAATCATA] [+] EMBL BF936435 [ GAAACTCCAGCAAACGATCTAGGAAACCTAAAAAGATAGTAGTTTGAGTAG TTGTTTAAGTTAGAAAAACTATGAGTTCATCAAGAGCCAGACAGAGTTTCGCCACAGAATGTGAAAATGCCATCAATAAACAAATCAATGTAGAACTACAAGCTGCTTACGATTATATGGCATTCTTTACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAAGTTGGCGAAATATCAGAACAAACGTGGTGGGTCGTGTTCAATACAGTGATATCAAGTGTCCGACTAAGACAGAATTCAGTAGTTTGGAAGATGCTATGAATACTGCCCTTGGAATGGAAAAAGCAGTCAGTAAATCATTATTAGAACTTCATGAAGTAGCTTCAAAGAACAATGATCCAGCATTGGCAGATTTTATTGAAAGTGAATTTCTTCATGAACAAGAAGATGCAATCAAACAATTCGCCGATTATTTAACCGAGACACAACGAGTCGGTAAAGGACTTGGAGAATATCTATTCGATAAATTAACATTAAATGAATAGAAAGATTCTAATTACCTATTATAAATGACACTACTAATTATCATGATTTCATTTGATACAG ] [+] EMBL AW400399 [ ATGTAGAAGTACAAGCTGCTTACGATTATATGGCATTCTTTACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAAGTTGGCGAAATATCAGAACAAACGTGGT GGTCGTGTTCAATACAGTGATATCAAGTGTCCGACTAAGACAGAATTCAGTAGTTTGGAAGATGCTATGAATACTGCCCTTGGAATGGAAAAAGCAGTCAGTAAATCATTATTAGAACTTCATGAAGTAGCTTCAAAGAACAATGATCCAGCA TGGCAAATTTTATTGAAAGTGAATTTCTTCATGAACAAGAAGATGC ATCAAAC ATTCG CGGTTATTT ACCGAGACAC ACGAGTCGGTAAAGGACTTG ] consensusID : consensus_11012#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 675 fasta sequence [CCGAGCCAATATTCGGCACGAGGTTCTACATCGAATCTAACACAATGAACAAGACAGTTTCCAAACATATATTCACCGAATCGAGAGCTAGACAGAATTTCGCCAAAGAATGTGAAGATGCCATCAATAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAATTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATGCGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTATTGAAACTTCATGAAATAGCTGCAAAGAACAATGATCCAGCACTAACCGATTTCATTGAGAGTCAGTATTTGCATGAACAAGAAGATGCAATCAAACAATTTGCTGACTATGTGACAGAGACAAATCGAGTTGGAAGTGGACTTGGTCAATATCTATTCGGCAAGATGACACTGAAAGAATAAACACGAATTCATTCAGTTGAACTGTTCATTCATTGTTATGTGCCTTATTTTATTCTCTGCATTCGTTNTTTATCAGTAAATGAGT] [+] EMBL CD082679 [CCGAGCCAATATTCGGCACGAGGTTCTACATCGAATCTAACACAATGAACAAGACAGTTTCCAAACATATATTCACCGAATCGAGAGCTAGACAGAATTTCGCCAAAGAATGTGAAGATGCCATCAATAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAATTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATGCGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTATTGAAACTTCATGAAATAGCTGCAAAGAACAATGATCCAGCACTAACCGATTTCATTGAGAGTCAGTATTTGCATGAACAAGAAGATGCAATCAAACAATTTGCTGACTATGTGACAGAGACAAATCGAGTTGGAAGTGGACTTGGTCAATATCTATTCGACAAGATGACACTGAAAGAATAAACACGAATTCATTCAGTTGAACTGTTCATTCATTGTTATGTGCCTTATTTTATTCTCTGCATTCGTTNTTTATCAGTAAATGAGT] [+] EMBL CD063197 [ CATGCAGAGAATTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATGCGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTATTGAAACTTCATGAAATAGCTGCAAAGAACAATGATCCAGCACTAACCGATTTCATTGAGAGTCAGTATTTGCATGAACAAGAAGATGCAATCAAACAATTTGCTGACTATGTGACAGAGACAAATCGAGTTGGAAGTGGACTTGGTCAATATCTATTCGG ] [-] EMBL CD063012 [ TGCAGAGAATTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATGCGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTATTGAAACTTCATGAAATAGCTGCAAAGAACAATGATCCAGCACTAACCGATTTCATTGAGAGTCAGTATTTGCATGAACAAGAAGATGCAATCAAACAATTTGCTGACTATGTGACAGAGACAAATCGAGTTGGAAGTGGACTTGGTCAATATCTATTCGGag ] consensusID : consensus_11012#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 613 fasta sequence [AGCAACATGAGTAAATCAAGAGCCAGACAGAATTTCGCCAAAGAATGTGAAGATGCCATCAATAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAATTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATGCGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTACTGAAACTTCATGAAATAGCTGCAAAGAACAATGATCCAGCACTAACCGATTTCATTGAGAGTCAGTATTTGCATGAACAAGAAAATGCAATCAAACAATTTGCTGACTATGTGACAGAGACAAATCGAGTTGGAAATGGACTTGGTCAATATCTATTCGACAAGATGACACTGAAAGAATAAACACGACTTCATTCAGTTGAACTGTTCATTCATTGTTATGTGCCTTATTTTATTCTCTGCATTCGTTTTTTATCAGTAAATGAGTTAT] [+] EMBL CD081252 [AGCAACATGAGTAAATCAAGAGCCAGACAGAATTTCGCCAAAGAATGTGAAGATGCCATCAATAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAATTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATGCGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTACTGAAACTTCATGAAATAGCTGCAAAGAACAATGATCCAGCACTAACCGATTTCATTGAGAGTCAGTATTTGCATGAACAAGAAAATGCAATCAAACAATTTGCTGACTATGTGACAGAGACAAATCGAGTTGGAAATGGACTTGGTCAATATCTATTCGACAAGATGACACTGAAAGAATAAACACGACTTCATTCAGTTGAACTGTTCATTCATTGTTATGTGCCTTATTTTATTCTCTGCATTCGTTTTTTATCAGTAAATGAGT ] [-] EMBL CD075082 [ AAGATGCCATCAATAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAATTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATGCGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTACTGAAACTTCATGAAATAGCTGCAAAGAACAATGATCCAGCACTAACCGATTTCATTGAGAGTCAGTATTTGCATGAACAAGAAAATGCAATCAAACAATTTGCTGACTATGTGACAGAGACAAATCGAGTTGGAAATGGACTTGGTCAATATCTATTCGACAAGATGACACTGAAAGAATAAACACGACTTCATTCAGTTGAACTGTTCATTCATTGTTATGTGCCTTATTTTATTCTCTGCATTCGTTTTTTATCAGTAAATGAGTT ] [+] EMBL CD083393 [ TCACATGAGGAACGTG ACATGCAGAGAATTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATGCGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTACTGAAACTTCATGAAATAGCTGCAAAGAACAATGATCCAGCACTGACCAATTTCATTGAGAGTCAGTATTTGCATGAACAAGAAAATGCAATCAAACAATTTGCTGACTATGTGACAGAGACAGATCGAGTTGGAAATGGACTTGGTCAATATCTATTCGACAAGATGACACTGAAAGAATAAACACGACTTCATTCAGTTGAACTGTTCATTCATTGTTATGTGCCTTATTTTATTCTCTGCATTCGTTTTTTATCAGTAAATGAGT ] [+] EMBL SM565 [ CAAGAAGATGCAATCANACAATTTGNTGACTATGTGACAGAGACAAATCGAGTTGGAAGTGGACTTGGTCAATATCTATTCGACAAGATGACACTGANAGAATANACACGACTTCA TCAGTTGAACTGTTCATTCA TGTTATGTGCCTTATTTTATTCTCTGCATTCGTNTTTNATCAGTAAATGAGTTAT] [+] EMBL SM564 [ ATGCAATCANACAATTTGNTGACTATGTGACAGAGACAAATCGAGTTGGAAGTGGACTTGGTCAATATCTATTCGACAAGATGACACTGANAGAATANACACGACTTCA TCAGTTGAACTGTTCATTCA TGTTATGTGCCTTATTTTATTCTCTGCATTCGTNTTTNATCAGTAAATGAGTTAT] consensusID : consensus_11012#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 588 fasta sequence [CTCCGAGGCCANAATTGGGCACGAGGGCTTACGATTATATGGCATTCTTCACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAAGTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAATACAGTGATATCAAGTGTCCGACTAAGACAGAATTCAGTAGTTTGGAAGATGCTATGAATACTGCCCTTGGAATGGAAAAAGCAGTCAGTAAATCATTATTAGAACTTCATGAAGTAGCTTCAAAGAACAATGATCCAGCATTGGCAGATTTTATTGAAAGTGAATTTCTTCATGAACAAG-AA-GATGCAATCAAACAATTCGCCGATTATTTAACCGAG-ACACAACGAGTCGGTAAAGGACTTGGAGAATATCTATTCGATAAATTAACATTAAATG-AATAGAAAGATTCTAATTACCT-ATTA-TAAATGACACTACTAATTATCATGATTTCATTTGATACAGGATAGTTTGTTTTTAAAAATTATTATTTGTAAATATATCAAATATACTTCAGCAATATAATCATAT] [+] EMBL CD081371 [CTCCGAGGCCANAATTGGGCACGAGGGCTTACGATTATATGGCATTCTTCACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAAGTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAATACAGTGATATCAAGTGTCCGACTAAGACAGAATTCAGTAGTTTGGAAGATGCTATGAATACTGCCCTTGGAATGGAAAAAGCAGTCAGTAAATCATTATTAGAACTTCATGAAGTAGCTTCAAAGAACAATGATCCAGCATTGGCAGATTTTATTGAAAGTGAATTTCTTCATGAACAAG AA GATGCAATCAAACAATTCGCCGATTATTTAACCGAG ACACAACGAGTCGGTAAAGGACTTGGAGAATATCTATTCGATAAATTAACATTAAATG AATAGAAAGATTCTAATTACCT ATTA TAAATGACACTACTAATTATCATGATTTCATTTGATACAGGATAGTTTGTTTTTAAAAATTATTATTTGTAAATATATCAAATATACTTCAGCAATATAATCATA ] [-] EMBL CD075205 [ CTTACGATTATATGGCATTCTTCACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAAGTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAATACAGTGATATCAAGTGTCCGACTAAGACAGAATTCAGTAGTTTGGAAGATGCTATGAATACTGCCCTTGGAATGGAAAAAGCAGTCAGTAAATCATTATTAGAACTTCATGAAGTAGCTTCAAAGAACAATGATCCAGCATTGGCAGATTTTATTGAAAGTGAATTTCTTCATGAACAAG AA GATGCAATCAAACAATTCGCCGATTATTTAACCGAG ACACAACGAGTCGGTAAAGGACTTGGAGAATATCTATTCGATAAATTAACATTAAATG AATAGAAAGATTCTAATTACCT ATTA TAAATGACACTACTAATTATCATGATTTCATTTGATACAGGATAGTTTGTTTTTAAAAATTATTATTTGTAAATATATCAAATATACTTCAGCAATATAATCATAT] [+] EMBL SMAA18482 [ ACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAAGTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAATACAGTGATATCAAGTGTCCGACTAAGACAGAATTCAGTAGTTTGGAAGATGCTATGAATACTGCCCTTGGAATGGAAAAAGCAGTCAGTAAATCATTATTAGAACTTCATGAAGTAGCTTCAAAGAACAATGATCCAGCATTGGCAGATTTTATTGAAAGTGAATTTCTTCATGAACAAG AA GATGCAATCAAACAATTCGCCGATTATTTAACCGAG ACACAACGAGTCGGTAAAGGACTTGGAGAATATCTATTCGATAAATTAACATTAAATG AATAGAAAGATTCTAATTACCT ATTA TAAATGACACTACTAATTATCATGATTTCATTTGATACAGGATAGTTTGTTTTTAAAAATAATAAT ] [+] EMBL CD179851 [ AGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAAGTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAATACAGTGATATCAAGTGTCCGACTAAGACAGAATTCAGTAGTTTGGAAGATGCTATGAATACTGCCCTTGGAATGGAAAAAGCAGTCAGTAAATCATTATTAGAACTTCATGAAGTAGCTTCAAAGAACAATGATCCAGCATTGGCAGATTTTATTGAAAGTGAATTTCTTCATGAACAAG AAGGATGC ATCAAACAATTCGCCGATTATTTAACCGAGNACAC ACGAGTCGGT ] [+] EMBL CD179935 [ AGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAAGTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAATACAGTGATATCAAGTGTCCGACTAAGACAGAATTCAGTAGTTTGGAAGATGCTATGAATACTGCCCTTGGAATGGAAAAAGCAGTCAGTAAATCATTATTAGAACTTCATGAAGTAGCTTCAAAGAACAATGATCCAGCATTGGCAGATTTTATTGAAAGTGAATTTCTTCATGAACAAGAAA GATGC ATCAAAC ] [-] EMBL CD062985 [ ATGCAGAGAAGTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAATACAGTGATATCAAGTGTCCGACTAAGACAGAATTCAGTAGTTTGGAAGATGCTATGAATACTGCCCTTGGAATGGAAAAAGCAGTCAGTAAATCATTATTAGAACTTCATGAAGTAGCTTCAAAGAACAATGATCCAGCATTGGCAGATTTTATTGAAAGTGAATTTCTTCATGAACAAG AA GATGCAATCAAACAATTCGCTGACTATGTGACAGAG ACAAATCGAGTTGGAAGTGGACTTGATCAATATCTATTCGgag ] [-] EMBL CD063277 [ TAGTTTGGAAAATGCTATGAATACTGCCCTTGGAATGGAAAAAGCAGTCAGTAAATCATTATTAGAACTTCATGAAGTAGCTTCAAAGAACAATGATCCAGCATTGGCAGATTTTATTGAAAGTGAATTTGTTCATGAACAAG AA GATGCAATCAAACAATTCGCttaa ] [-] EMBL BG931753 [ AAGATGCTATGAATACTGCCCTTGGAATGGAAAAAGCAGTCAGTAAATCATTATTAGAACTTCATGAAGTAGCTTCAAAGAACAATGATCCAGCATTGGCAGATTTTATTGAAAGTGAATTTCTTCATGAACAAG AA GATGCAATCAAACAATTCGCCGATTATTTAACCGAa ] [+] EMBL CD179953 [ AATTCGCCGATTATTTAACCGAG ACACAACGAGTCGGTAAAGGACTTGGAGAATATCTATTCGATAAATTAACATTAAATGAAATAGAAAGAATCTAATTACCTAATTACTAAATGACACTACTAATTATCATGATTTC ] [+] EMBL CD179934 [ AATTCGCCGATTATTTAACCGAG ACACAACGAGTCGGTAAAGGACTTGGAGAATATCTATTCGATAAATTAACATTAAATG AATAGAAAGATTCTAATTACCT ATTA TAAATGACACTACTAATTATCATGATTTC ] [-] EMBL BG931693 [ TCGGTAAAGGACTTGGAGAATATCTATTCGATAAATTAACATTAAATG AATAGAAAGATTCTAATTACCT ATTA TAAATGAC ] consensusID : consensus_11012#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence [CGAGGCAGACCNCGACGTACGATCATTTCTACATCGAATCTAACACAATGAACAAGACAGTTTCCAAACATATATTCACCGAAGTCGAGAGCTAGACAGAATTTCGCCAAAGAATGTGAAGATGCCATCAATAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAATTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATGCGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTATTGAAACTTCATGAAATAGCTACAAAGAACAATGATCCAGCACTGACCAATTTCATTGAGAGTCAGTATTTGCATGAACAAGAAGATGCAATCAAACAATTTGCTGACTATGTGA] [+] EMBL CD084427 [CGAGGCAGACCNCGACGTACGATCATTTCTACATCGAATCTAACACAATGAACAAGACAGTTTCCAAACATATATTCACCGAAGTCGAGAGCTAGACAGAATTTCGCCAAAGAATGTGAAGATGCCATCAATAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAATTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATGCGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTATTGAAACTTCATGAAATAGCTACAAAGAACAATGATCCAGCACTGACCAATTTCATTGAGAGTCAGTATTTGCATGAACAAGAAGATGCAATCAAACAATTTGCTGACTATGTGA] consensusID : consensus_11012#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 341 fasta sequence [CNTCGCGGCCANAATTCGGCACGAGGATCGAATCTAACACAATGAACAAGACAGTTTCCAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAATTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATGCGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTATTG] [+] EMBL CD077808 [CNTCGCGGCCANAATTCGGCACGAGGATCGAATCTAACACAATGAACAAGACAGTTTCCAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCACATGAGGAACGTGAACATGCAGAGAATTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATGCGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTATTG] [+] EMBL CD063122 [ CATGCAGAGAATTTGGCGAAATATCAGAACAAACGTGGTGGTCGTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATGCGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTATT ] consensusID : consensus_11012#7 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 231 fasta sequence [GATGCAATCAAACAATTCGCCCGATTATTTAAGCCGAGACACAACGAGTCGGTAAAGGACTTGGAGAATATCTATTCGATAAATTAACATTAAATGATCTAAGAAGAATTCTAATTACCTATTATAAACTGACACTCATAATTATCATGATTTCATTTGATACCATTATAGTTTTCCGTTTTCAGAAATTAATTACTTTGCCAAATATATCAAATAGCTAGCCTTAAGGCC] [+] EMBL AA952818 [GATGCAATCAAACAATTCGCCCGATTATTTAAGCCGAGACACAACGAGTCGGTAAAGGACTTGGAGAATATCTATTCGATAAATTAACATTAAATGATCTAAGAAGAATTCTAATTACCTATTATAAACTGACACTCATAATTATCATGATTTCATTTGATACCATTATAGTTTTCCGTTTTCAGAAATTAATTACTTTGCCAAATATATCAAATAGCTAGCCTTAAGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11012#0 ------------------------------------------------------------ consensus_11012#5 ------------------------------------------------------------ consensus_11012#2 ------------------------------------------------------------ consensus_11012#6 ------------------------------------------------------------ consensus_11012#3 ------------------------------------------------------------ consensus_11012#4 ------------------------------------------------------------ consensus_11012#7 ------------------------------------------------------------ consensus_11012#1 GACGAGAAACTCCAGCAAACGATCTAGGAAACTAAAAAGACAGTAGTTTGAGTAGTTTGT 60 consensus_11012#0 ------------------------------------------------------------ consensus_11012#5 ------------------------------------------------------------ consensus_11012#2 ------------------------------------------------------------ consensus_11012#6 ------------------------------------------------------------ consensus_11012#3 ------------------------------------------------------------ consensus_11012#4 ------------------------------------------------------------ consensus_11012#7 ------------------------------------------------------------ consensus_11012#1 TTAAGTTAGAAAAACTATGAGTTCATCAAGAGCCAGACAGAGTTTCGCCACAGAATGTGA 120 consensus_11012#0 ------------------------------------------------------------ consensus_11012#5 ------------------------------------------------------------ consensus_11012#2 ------------------------------------------------------------ consensus_11012#6 ------------------------------------------------------------ consensus_11012#3 ------------------------------------------------------------ consensus_11012#4 --------------CTCCGAGGCCANAATTGGGCACGAGGGCTTACGATTATATGGCATT 46 consensus_11012#7 ------------------------------------------------------------ consensus_11012#1 AAATGCCATCAATAAACAAATCAATGTAGAACTACAAGCTGCTTACGATTATATGGCATT 180 consensus_11012#0 ----------CTTCGGGCCAAAAATTCGGCACGAGGAGTCAATTCAAATGTAAACAACCA 50 consensus_11012#5 ------------------------------------------------------------ consensus_11012#2 ------------------------------------------------------------ consensus_11012#6 ------------------------------------------------------------ consensus_11012#3 ------------------------------------------------------------ consensus_11012#4 CTTCACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAA 106 consensus_11012#7 ------------------------------------------------------------ consensus_11012#1 CTTTACTTACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAA 240 consensus_11012#0 ACATCGTGCGTCATTTCCAAATACCCTGTCACTCGACTTTCGTTCATTTCGTGGCACGTG 110 consensus_11012#5 ------------------------------------------------------------ consensus_11012#2 ------------------------------------------------------------ consensus_11012#6 ------------------------------------------------------------ consensus_11012#3 ------------------------------------------------------------ consensus_11012#4 AGCTTCACATGAGGAACGTGAACATGCAGAGAAGTTGGCGAAATATCAGAACAAACGTGG 166 consensus_11012#7 ------------------------------------------------------------ consensus_11012#1 AGCTTCACATGAGGAACGTGAACATGCAGAGAAGTTGGCGAAATATCAGAACAAACGTGG 300 consensus_11012#0 TCTGTTTGATTCACTAGTATAAAAATGAAACAGATACATATCACTGTATCATTCGATAAA 170 consensus_11012#5 ---------------------------------------------------CGAGGCAGA 9 consensus_11012#2 ----------------------------------------------------CCGAGCCA 8 consensus_11012#6 ------------------------------------------------------------ consensus_11012#3 ------------------------------------------------------------ consensus_11012#4 TGGTCGTGTTCAATACAGTGATATCAAGTGTCCGACTAAGACAGAATTCAGTAGTTTGGA 226 consensus_11012#7 ------------------------------------------------------------ consensus_11012#1 TGGTCGTGTTCAATACAGTGATATCAAGTGTCCGACTAAGACAGAATTCAGTAGTTTGGA 360 consensus_11012#0 TCATT-CAACCGATCATTTCTACATCGAATCTAACACAATGAACAAGACAGTTTCCAAAC 229 consensus_11012#5 CCNCGACGTACGATCATTTCTACATCGAATCTAACACAATGAACAAGACAGTTTCCAAAC 69 consensus_11012#2 ATATTCGGCACGA--GGTTCTACATCGAATCTAACACAATGAACAAGACAGTTTCCAAAC 66 consensus_11012#6 ------------------------------------------------------------ consensus_11012#3 -----------------------------------------------------------A 1 consensus_11012#4 AGATGCTATGAATACTGCCCTTGGAATGGAAAAAGCAGTCAGTAAATCATTATTAGAACT 286 consensus_11012#7 ------------------------------------------------------------ consensus_11012#1 AGATGCTATGAATACTGCCCTTGGAATGGAAAAAGCAGTCAGTAAATCATTATTAGAACT 420 consensus_11012#0 ATATATTCACCGAA--TCGAGAGCTAGACAGAATTTCGC-CAAAGAATGTGAAGATGCCA 286 consensus_11012#5 ATATATTCACCGAAG-TCGAGAGCTAGACAGAATTTCGC-CAAAGAATGTGAAGATGCCA 127 consensus_11012#2 ATATATTCACCGAA--TCGAGAGCTAGACAGAATTTCGC-CAAAGAATGTGAAGATGCCA 123 consensus_11012#6 -CNTCGCGGCCANAATTCGGCACGAGGATCGAATCTAACACAATGAACAAGACAGTTTC- 58 consensus_11012#3 GCAACATGAGTAAA--TCAAGAGCCAGACAGAATTTCGC-CAAAGAATGTGAAGATGCCA 58 consensus_11012#4 TCATGAAGTAGCTTCAAAGAACAATGATCCAGCATTGGCAGATTTTATTGAAAGTGAATT 346 consensus_11012#7 ------------------------------------------------------------ consensus_11012#1 TCATGAAGTAGCTTCAAAGAACAATGATCCAGCATTGGCAGATTTTATTGAAAGTGAATT 480 consensus_11012#0 TCAATAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTT 346 consensus_11012#5 TCAATAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTT 187 consensus_11012#2 TCAATAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTT 183 consensus_11012#6 ----CAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTT 114 consensus_11012#3 TCAATAAACAAATCAACATGGAACTACAAGCTGCTTACGATTATATGGCATTCTTCACTT 118 consensus_11012#4 TCTTCATGAACAAGAAGATGCAATCAAACAATTCGCC-GATTATTTAA---------CCG 396 consensus_11012#7 ----------------GATGCAATCAAACAATTCGCCCGATTATTTAAG--------CCG 36 consensus_11012#1 TCTTCATGAACAAGAAGATGCAATCAAACAATTCGCC-GATTATTTAA---------CCG 530 *** ** * * * * ****** * * consensus_11012#0 ACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCAC 406 consensus_11012#5 ACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCAC 247 consensus_11012#2 ACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCAC 243 consensus_11012#6 ACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCAC 174 consensus_11012#3 ACTTCGATCGAGATGATGTATCATTTCCGAAAGCAGCTGAATTCTTTCGAAAAGCTTCAC 178 consensus_11012#4 AGACACAACGAGTCGGTAAAGGACTTG-GAGAATATCT--ATTCGATAAATTAACATTAA 453 consensus_11012#7 AGACACAACGAGTCGGTAAAGGACTTG-GAGAATATCT--ATTCGATAAATTAACATTAA 93 consensus_11012#1 AGACACAACGAGTCGGTAAAGGACTTG-GAGAATATCT--ATTCGATAAATTAACATTAA 587 * * **** * * * * ** ** * * ** **** * * * * * * consensus_11012#0 ATGAGG-AACGTGAACATGCAGAGAATTTGGCGAAATATCAGA-ACAAACGTGGTGGGTC 464 consensus_11012#5 ATGAGG-AACGTGAACATGCAGAGAATTTGGCGAAATATCAGA-ACAAACGTGGTGG-TC 304 consensus_11012#2 ATGAGG-AACGTGAACATGCAGAGAATTTGGCGAAATATCAGA-ACAAACGTGGTGG-TC 300 consensus_11012#6 ATGAGG-AACGTGAACATGCAGAGAATTTGGCGAAATATCAGA-ACAAACGTGGTGG-TC 231 consensus_11012#3 ATGAGG-AACGTGAACATGCAGAGAATTTGGCGAAATATCAGA-ACAAACGTGGTGG-TC 235 consensus_11012#4 ATGAAT--AGAAAGATTCTAATTACCTATTATAAA-TGACACTACTAATTATCATGA-TT 509 consensus_11012#7 ATGATCTAAGAAGAATTCTAATTACCTATTATAAACTGACACTCATAATTATCATGA-TT 152 consensus_11012#1 ATGAAT--AGAAAGATTCTAATTACCTATTATAAA-TGACACTACTAATTATCATGA-TT 643 **** * * * * * ** * ** ** * ** * consensus_11012#0 GTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATG 524 consensus_11012#5 GTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATG 364 consensus_11012#2 GTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATG 360 consensus_11012#6 GTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATG 291 consensus_11012#3 GTGTTCAGTACAGTGATATCAAGTGTCCGACTAAGGTAGAATTCAGTGATTTGGTAGATG 295 consensus_11012#4 TCATTTGATAC-AGGATAGT---TT---GTTTTTAA--AAATTA-TTATTTG--TAAATA 557 consensus_11012#7 TCATTTGATACCATTATAGT---TTTCCGTTTTCAG--AAATTAATTACTTTGCCAAATA 207 consensus_11012#1 TCATTTGATAC-AGGATAGT---TT---GTTTTTAA--AAATTA-TTATTTG--TAAATA 691 ** *** *** * * * **** * ** * ** consensus_11012#0 CGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTATTGAAACTTCATG 584 consensus_11012#5 CGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTATTGAAACTTCATG 424 consensus_11012#2 CGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTATTGAAACTTCATG 420 consensus_11012#6 CGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTATTG---------- 341 consensus_11012#3 CGATGAACACTGCATTGTCAATGGAGAAGGCAGTGAATGACTCATTACTGAAACTTCATG 355 consensus_11012#4 TATCAAATATACTTCAGCAATATAATCATAT----------------------------- 588 consensus_11012#7 TATCAAATA---GCTAGCCTTAAGGCC--------------------------------- 231 consensus_11012#1 TATCAAATATACTTCAGCAATATAATCATA------------------------------ 721 ** * * consensus_11012#0 AAATAGCTGCAAAGAACAATGATCCAGCACTAACCGATTTCATTGAGAGTCAGTATTTGC 644 consensus_11012#5 AAATAGCTACAAAGAACAATGATCCAGCACTGACCAATTTCATTGAGAGTCAGTATTTGC 484 consensus_11012#2 AAATAGCTGCAAAGAACAATGATCCAGCACTAACCGATTTCATTGAGAGTCAGTATTTGC 480 consensus_11012#6 ------------------------------------------------------------ consensus_11012#3 AAATAGCTGCAAAGAACAATGATCCAGCACTAACCGATTTCATTGAGAGTCAGTATTTGC 415 consensus_11012#4 ------------------------------------------------------------ consensus_11012#7 ------------------------------------------------------------ consensus_11012#1 ------------------------------------------------------------ consensus_11012#0 ATGAACAAGAAGATGCAATCAAACAATTTGCTGACTATGTGACAGAGACNATCGAAGTTG 704 consensus_11012#5 ATGAACAAGAAGATGCAATCAAACAATTTGCTGACTATGTGA------------------ 526 consensus_11012#2 ATGAACAAGAAGATGCAATCAAACAATTTGCTGACTATGTGACAGAGACAAATCGAGTTG 540 consensus_11012#6 ------------------------------------------------------------ consensus_11012#3 ATGAACAAGAAAATGCAATCAAACAATTTGCTGACTATGTGACAGAGACAAATCGAGTTG 475 consensus_11012#4 ------------------------------------------------------------ consensus_11012#7 ------------------------------------------------------------ consensus_11012#1 ------------------------------------------------------------ consensus_11012#0 GAAGTGGACTTGGTCA-TATCTATTCGANCAGATGACACTNGAAGAATAA-CACGAATTC 762 consensus_11012#5 ------------------------------------------------------------ consensus_11012#2 GAAGTGGACTTGGTCAATATCTATTCGGCAAGATGACACTGAAAGAATAAACACGAATTC 600 consensus_11012#6 ------------------------------------------------------------ consensus_11012#3 GAAATGGACTTGGTCAATATCTATTCGACAAGATGACACTGAAAGAATAAACACGACTTC 535 consensus_11012#4 ------------------------------------------------------------ consensus_11012#7 ------------------------------------------------------------ consensus_11012#1 ------------------------------------------------------------ consensus_11012#0 ATTCAGTTGAACTGTTCATTCATTGGTATGTGCCCTATTTATCTCTGCATTCGTNTTTAT 822 consensus_11012#5 ------------------------------------------------------------ consensus_11012#2 ATTCAGTTGAACTGTTCATTCATTGTTATGTGCCTTATTTTATTCTCTGCATTCGTTNTT 660 consensus_11012#6 ------------------------------------------------------------ consensus_11012#3 ATTCAGTTGAACTGTTCATTCATTGTTATGTGCCTTATTTTATTCTCTGCATTCGTTTTT 595 consensus_11012#4 ------------------------------------------------------------ consensus_11012#7 ------------------------------------------------------------ consensus_11012#1 ------------------------------------------------------------ consensus_11012#0 CAGTAATGA--------- 831 consensus_11012#5 ------------------ consensus_11012#2 TATCAGTAAATGAGT--- 675 consensus_11012#6 ------------------ consensus_11012#3 TATCAGTAAATGAGTTAT 613 consensus_11012#4 ------------------ consensus_11012#7 ------------------ consensus_11012#1 ------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||