These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11018#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 1768 fasta sequence [GGCCGGCAGGGAGAGCGTTGTGATTTTTGTTGCATAGTGATGTGGAGTCCTGTTGTTGTCACCGTTGGAGGGTTACCTTGTCCTAGTGATAGGGTAGCTTTGGTTCGAAAGTCGCTGCCTTACCCAGAACCCTCCACTATTCTGTCACACAGGAAGCGAGCTAGGTTGGATAATCTTACCGAGGAGGAGAAAATCATCCGGAGAAAAATACTTAACCGGGAGGCAGCTCAGAAAGCACGTGATCGCAGAAAAGATTTGATGGAGAGTATGGAGGAAAATCTAGCTTATCTCCGTTGGGAAAATGATTACCTGAAATCCTCAAACCGAATGCTCCGCCTTAAGTTTGTTGAACAAGAGCAAAAATTCCAAGCACTGCAAGAAAAACTAAGTGGTATTATCAGACATGTGGAGAAGTTTTCTGGAAGTCAGATTGAGCCACCAGAGTCAGCTGAACTCCTCCCTCTGCAGAAGGGAGTGGCTCTCTGTCTGTCCGTTCTACTCTTCCTCCACCTCTACAATGGCCTGGAGAATGCGTCCAAAACTCCAGTCTCGAGGATGTGCCTGAAGATATATCATCAACTTTGTTTGATGCTCAAACCGTCGAAGTCTCATCTCAAGATGTGTCTGAAACCAAACAGTCTGGAGACAGCAATTGCTCTGACGACCTGATTCCATATTCTCCATGCTTATACGATAGTATCTTAAACAGTCTACAAGATGACCACATAGAAGACATTCCTGGATTAACAGATGCTTACAATTCGGAAGAAAGCCTGGATGAACTCTTAGATGTTTTAAAGTGTGACGCGTGTGATGATTTATCCACAGGAATTCTCTCTTAACATTT-TTCAGACCCCGTGATC-TTGT-CACTTAAATCCTTGGCTATAGTGGCGTTGTACATATGACTTTATCAATTTACTTATTTATCTCATTGTC-TCACTCTAAATCTATCGTTTAATTTTGATACTTAGTGCTGGGATTTANCCGATAAAACAATGCGGTCTAAAGAAGTGGAGAGATGTCCGTCGCTNTATTATTCGCTAGTGCAATATTAGTCGCACGTACTTGGTAACGCATGCTTTGGTTATGTCCACAAATTGTACTGCCAGTTGTATCTAGGTTTCGTAATGCCTTACCAGGTGCGTCCAAGAAACTAATTACATACGAATTTTCAGAATGTCATGCTTGGGCGACTGTGATTCGATAACTAGGAGCCAGACAGTTATTCTCGGGAGGATAGTCTCCACTGAAAAGAGGACTGACATGTTGGTATTTATTACCAACTATTCTGGTATGTTGTCTTGCGAGCTAACTTGATGTTTACGAGACGTCCTGTATTGTAAGGATTTGGTGCCGAGTCTAGTTGGGATGTGTGAGATCCCAACTTGTGATGCGTGGTAAAACATTCGGTGACGTCACTGACATTTCATAATGTTGGCCTAGGGTGCTAGTAAAGTCGCGCGTTTAGTGGACTTATCCAGATTTGTTATGGGGAGTTAGGATGATAATATATTTAGGGTCCTGATTTAGTGTGTACGGGACGTTGGTTGTCTGTCCTGGCCACTGACCACGTTAGACCCCGTTGCCGGCTGTTTTCGAGCCTGATGGTTGCAGTCCGCTGGTCAACTACTTAATGGGCAAGATGGAGTGGGGTGCTGACTAAGCGTGTCATACTTGTTCTAGTCGTCAGTGAAAGTTGAAGTAAGACTGGCCGTTTCCAGTATTGAGGTTGGGCTCCGTCAATCCGCGTTCTCACAATCCAATTCCC] [+] EMBL CD138889 [GGCCGGCAGGGAGAGCGTTGTGATTTTTGTTGCATAGTGATGTGGAGTCCTGTTGTTGTCACCGTTGGAGGGTTACCTTGTCCTAGTGATAGGGTAGCTTTGGTTCGAAAGTCGCTGCCTTACCCAGAACCCTCCACTATTCTGTCACACAGGAAGCGAGCTAGGTTGGAT ] [+] EMBL CD083005 [ TGGAGTCCTGTTGTTGTCACCGTTGGAGGGTTACCTTGTCCTAGTGATAGGGTAGCTTTGGTTCGAAAGTCGCTGCCTTACCCAGAACCCTCCACTATTCTGTCACACAGGAAGCGAGCTAGGTTGGATAATCTTACCGAGGAGGAGAAAATCATCCGGAGAAAAATACTTAACCGGGAGGCAGCTCAGAAAGCACGTGATCGCAGAAAAGATTTGATGGAGAGTATGGAGGAAAATCTAGCTTATCTCCGTTGGGAAAATGATTACCTGAAATCCTCAAACCGAATGCTCCGCCTTAAGTTTGTTGAACAAGAGCAAAAATTCCAAGCACTGCAAGAAAAACTAAGTGGTATTATCAGACATGTGGAGAAGTTTTCTGGAAGTCAGATTGAGCCACCAGAGTCAGCTGAACTCCTCCCTCTGCAGAAGGGAGTGGCTCTCTGTCTGTCCGTTCTACTCTTCCTCCACCTCTACAATGGCCTGGAGAATGCGTCCAAAACTCCAGTCTCGAGGATGTGCCTGAAGATATATCATCAACTNTGTTTGATGCTCANACCGTCGAAGTCTCATCTCAAGA ] [+] EMBL CD180890 [ TAGGTTGGATAATCTTACCGAGGAGGAGAAAATCATCCGGAGAAAAATACTTAACCGGGAGGCAGCTCAGAAAGCACGTGATCGCAGAAAAGATTTGATGGAGAGTATGGAGGAAAATCTAGCTTATCTCCGTTGGGAAAATGATTACCTGAAATCCTCAAACCGAATGCTCCGCCTTAAGTTTGTTGAACAAGAGCAAAAATTCCAAGCACTGCAAGAAAAACTAAGTGGTATTATCAGACATGTGGAGAAGTTTTCTGGAAGTCAGATTGAGCCACCAGAGTCAGCTGAACTCCTCCCTCTGCAGAAGGGAGTGGCTCTCTGTCTGTCCGTTCTACTCTTCCTCCACCACTACAATGGCCTGGAGAATGCGTCCAAAACTCCAGTCTCGAGGATGTGCCTGAAGATATATCATCAACTGTGTTTGATGCTCAAACCGTCGAAGTCTCATCTCAAGATGTGTCTGAA ] [-] EMBL CD060171 [ AGCAAAAATTCCAAGCACTGCAAGAAAAACTAAGTGGTATTATCAGACATGTGGAGAAGTTTTCTGGAAGTCAGATTGAGCCACCAGAGTCAGCTGAACTCCTCCCTCTGCAGAAGGGAGTGGCTCTCTGTCTGTCCGTTCTACTCTTCCTCCACCTCTACAATGGCCTGGAGAATGCGTCCAAAACTCCAGTCTCGAGGATGTGCCTGAAGATATATCATCAACTTTGTTTGATGCTCAAACCGTCGAAGTCTCATCTCAAGATGTGTCTGAAACCAAACAGTCTGGAGACAGCAATTGCTCTGACGACCTGATTCCATATTCTCCATGCTTATACGATAGTATCTTAAACAGTCTGCAAGATGACCACATAGAAGACATTCCTGGATTAACAGATGCTTACAATTCGGAAGAAAGCCTGGATGAACTCTTAGATGTTTTAAAGTGTGACGCGTGTGATGATTTATCCACAGGAATTCTCTCTTAACATTTCTTCAGACCCCGTGATCGTTCTACACTTA ] [-] EMBL CD076781 [ ACATGTGGAGAAGTTTTCTGGAAGTCAGATTGAGCCACCAGAGTCAGCTGAACTCCTCCCTCTGCAGAAGGGAGTGGCTCTCTGTCTGTCCGTTNTACTCTTCCTCCACCTCTACAATGGCCTGGAGAATGCGTCCAAAACTCCAGTCTCGAGGATGTGCCTGAAGATATATCATCAACTTTGTTTGATGCTCAAACCGTCGAAGTCTCATCTCAAGATGTGTCTGAAACCAAACAGTCTGGAGACAGCAATTGCTCTGACGACCTGATTCCATATTCTCCATGCTTATACGATAGTATCTTAAACAGTCTACAAGATGACCACATAGAAGACATTCCTGGATTACCAGATGCTTACAATTCGGAAGAAAGCCTGGATGAACTCTTAGATGTTTTAAAGTGTGACGCGTGTGATGATTTATCCACAGGAATTCTCTCTTAACATTT TTCAGACCCCGTGATC TTGT CACTTAAATCCTTGGCTATAGTGGCGTTGTACATATGACTTTATCAATTTACTTATTTATCTCATTGT ] [-] EMBL CD076589 [ CTGAACTCCTCCCTCTGCAGAAGGGAGTGGCTCTCTGTCTGTCCGTTNTACTCTTCCTCCACCTCTACAATGGCCTGGAGAATGCGTCCAAAACTCCAGTCTCGAGGATGTGCCTGAAGATATATCATCAACTTTGTTTGATGCTCAAACCGTCGAAGTCTCATCTCAAGATGTGTCTGAAACCAAACAGTCTGGAGACAGCAATTGCTCTGACGACCTGATTCCATATTCTCCATGCTTATACGATAGTATCTTAAACAGTTTACAAGATGACCACATAGAAGACATTCCTGGATTAACAGATGCTTACAATTCGGAAGAAAGCCTGGATGAACTCTTAGATGTTTTAAAGTGTGACGCGTGTGATGATTTATCCACAGGAATTCTCTCTTAACATTT TTCAGACCCCGTGATC TTGT CACTTAAATCCTTGGCTATAGTGGCGTTGTACATATGACTTTATCAATTTACTTATTTATCTCATTGT ] [+] EMBL BG931304 [ gTCTCTGTCTGTCCGTTCTACTCTTCCTCCACCTCTACAATGGCCTGGAGAATGCGTCCAAAACTCCAGTCTCGAGGATGTGCCTGAAGATATATCATCAACTTTGTTTGACGCTCAAACCGTCGAAGTCTCATCTCAAGATGTGTCTGAAACCAAACAGTCTGGAGACAGCAATTGCTCTGACGACCTGATTCCATATTCTCCATGCTTATACGATAGAATCTTAAACAGTCTACAAGATGACCACATAGAAGACATTCCTGGATTAACAGATGCTTACAATTCGGAAGAGAGCCTGGATGAACTCTTACATGTATTATAGTGTGACGCGTGTGAT ] [+] EMBL BG930710 [ TCAAACCGTCGAAGTCTCATCTCAAGATGTGTCTGAAACCAAACAGTCTGGAGACAGCAATTGCTCTGACGACCTGATTCCATATTCTCCATGCTTGTACGATAGTATCTTAAACAGTCTACAAGATGACCACATAGAAGACATTCCTGGATTAACAGATGCTTACAATTCGGAAGAAAGCCTGGATGAACTCCTAGATGTTTTAAAGTGTGACGCGTGTGAT ] [-] EMBL CD138712 [ CTGACGACCTGATTCCATATTCTCCATGCTTATACGATAGTATCTTAAACAGTCTACAAGATGACCACATAGAAGACATTCCTGGATTAACAGATGCTTACAATTCGGAAGAAAGCCTGGATGAACTCTTAGATGTTTTAAAGTGTGACGCGTGTGATGATTTATCCACAGGAATTCTCTCTTAACATTT TTCAGACCCCGTGATC TTGT CACTTAAATCCTTGGCTATAGTGGCGTTGTACATATGACTTTATCAATTTACTTATTTATCTCTCTGT ] [+] EMBL BG932424 [ ATTT TTCAGACCCCGTGATC TTGT CACTTAAATCCTTGGCTATAGTGGCGTTGTACACATGACTTTATCAATTTACTTATTTATCTCATTGTC T ] [-] EMBL CD115329 [ CGTTGTACATATGAC TTATCAATTTACTTA TTATCTCA TGTCTTCACTCTAAATCTATCGTTTAATTTTGATACTTAGTGCTGGGATTTANCCGATAAAACAATGCGGTCTAAAGAAGTGGAGAGATGTCCGTCGCTNTATTATTCGCTAGTGCAATATTAGTCGCACGTACTTGGTAACGCATGCTTTGGTTATGTCCACAAATTGTACTGCCAGTTGTATCTAGGTTTCGTAATGCCTTACCAGGTGCGTCCAAGAAACTAATTACATACGAATTTTCAGAATGTCATGCTTGGGCGACTGTGATTCGATAACTAGGAGCCAGACAGTTATTCTCGGGAGGATAGTCTCCACTGAAAAGAGGACTGACATGTTGGTATTTATTACCAACTATTCTGGTATGTTGTCTTGCGAGCTAACTTGATGTTTACGAGACGTCCTGTATTGTAAGGATTTGGTGCCGAGTCTAGTTGGGATGTGTCAGATCCCAGCTTGTGATGAGTGG ] [+] EMBL CD115537 [ tctggcacgTTACATACGAATTTTCAGAATGTCATGCTTGGGCGACTGTGATTCGATAACTGGGAGCCAGACAGTTATTCTCGGGAGGATAGTCTCCACTGAAAAGAGGACTGACATGTTGGTTTTTATTACCAACTATTCTGGTATGTTGCCTTGCGAGCTAACTTGATGTTTACGAGACGTCCTGTATTGTAAGGATTTGGTGCCGAGTCTAGTTGGGATGTGTGAGATCCCAACTTGTGATGCGTGGTAAAACATTCGGTGACGTCACTGACATTTCATAATGTTGGCCTAGGGTGCTAGTAAAGTCGCGCGTTTAGTGGACTTATCCAGATTTGTTATGGGGAGTTAGGATGATAATATATTTAGGGTCCTGATTTACTGTGTACGGGACGTTGGTTGTCTGTCCTGGCCACTGACCACGTTAGACCCCGTTGCCGGCTGTTTTCGAGCCTGATGGTTGCAGTCCGCTGGTCAACTAC ] [-] EMBL CD115452 [ TGGGCGACTGTGATTCGATAAATAGGAGCCAGACAGTTATTCTCGGGAGGATAGTCTCCACTGAAAAGAGGACTGACATGTTGGTATTTATTACCAACTATTCTGGTATGTTGTCTTGCGAGCTAACTTGATGTTTACGAGACGTCCTGTATTGTAAGGATTTGGTGCCGAGTCTAGTTGGGATGTGTGAGATCCCAACTTGTGATGCGTGGTAAAACATTCGGTGACGTCACTGACATTTCATAATGTTGGCCTAGGGTGTTAGTAAAGTCGCGCGTTTAGTGGACTTATCCAGATTTGTTATGGGGAGTTAGGATGATAATATATTTAGGGTCCTGATTTAGTGTGTACGGGACGTTGGTAGTATGTCCTGGCCACGGACCACGTTAGACCCCGTTGCCGGCTGTTTTCGAGCCTGATGGTTGCAGTCCGCTGGTCAACTACTTAATGGGCAAGATGGAGTGGGG ] [-] EMBL CD115486 [ TCCACTGAAAAGAGGACTGACATGTTGGTATTTATTACCAACTATTCTGGTATGTTGTCTTGCGAGCTAACTTGATGTTTACGAGACGTCCTGTATTGTAAGGATTTGGTGCCGAGTCTAGTTGGGATGTGTGAGATCCCAACTTGTGATGCGTGGTAAAACATTCGGTGACGTCACTGACATTTCATAATGTTGGCCTAGGGTGCTAGTAAAGTCGCGCGTTTAGTGGACTTATCCAGATTTGTTATGGGGAGTTAGGATGATAATATATTTAGCGTCCTGATTTAGTGTGTACGGGACGTTaaagta ] [-] EMBL CD200423 [ AGGATTTGGTGCCGAGTCTAGTTGGGATGTGTGAGATCCCAACTTGTGATGCGTGGTAAAACATTCGGTGATGTCACTGACATTTCATAATGTTGGCCTAGGGTGCTAGTAAAGTCGCGCGTTTAGTGGACTTATCCAGATTTGTTATGGGGAGTTAGGATGATAATATATTTAGGGTCCTGATTTAGTGTGTACGGGACGTTGGTTGTCTGTCCTGGCCACTGACCACGTTAGACCCCGTTGCCGGCTGTTTTCGAGCCTGATGGTTGCAGTCCGCTGGTCAACTACTTAATGGGCAAGATGGAGTGGGGTGCTGACTAAGCGTGTCATACTTGTTCTAGTCGTCAGTGAAAGTTGAAGTAAGACTGGCCGTTTCCAGTATTGAGGT ] [+] EMBL CD091003 [ CATAATGTTGGCCTAGGGTGCTAGTAAAGTCGCGCGTTTAGTGGACTTATCCAGATTTGTTATGGGGAGTTAGGATGATAATATATTTAGGGTCCTGATTCAGTGTGTACGGNACGTTGGTTGTCTGTCCTGGCCACTGACCACGTTAGACCCCGTTGCCGGCTGTTTTCGAGCCTGATGGTTGCAGTCCGCTGGTCAACTACTTAATGGGCAAGATGG ] [+] EMBL CD093068 [ CCCCGTTGCCGGCTGTTTTCGAGCCTGATGGTTGCAGTCCGCTGGTCAACTACTTAATGGGCAAGATGGAGTGGGGTGCTGACTAAGCGTGTCATACTTGTTCTAGTCGTCAGTGAAAGTTGAAGTAAGACTGGCCGTTTCCAGTATTGAGGTTGGGCTCCGTCAATCCGCGTTCTCACAATCCAATTCCC] [-] EMBL CD164040 [ CCCGTTGCCGGCTGTTTTCGAGCCTGATGGTTGCAGTCCGCTGGTCAACTACTTAATGGGCAAGATGGAGTGGGGTGCTGACTAAGCGTGTCATACTT ] consensusID : consensus_11018#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 747 fasta sequence [GNAGCCAANATTCGGCACGAGGCCTTAACCGGGAGGCAGCTCAGAAAGCACGTGATCGCAGAAAAGATTTGATGGAGAGTATGGAGGAAAATCTAGCTTATCTCCGTTGGGAAAATGATTACCTGAAATCCTCAAACCGAATGCTCCGCCTTAAGTTTGTTGAACAAGAGCAAAAATTCCAAGCACTGCAAGAAAAACTAAGTGGTATTATCAGACATGTGGAGAAGTTTTCTGGAAGTCAGATTGAGCCACCAGAGTCAGCTGAACTCCTCCCTCTGCAGAAGGGAGTGGCTCTCTGTCTGTCCGTTCTACTCTTCCTCCACCTCTACAATGGCCTGGAGAATGCGTCCAAAACTCCAGTCTCGAGGATGTGCCTGAAGATATATCATCAACTTTGTTTGATGCTCAAACCGTCGAAGTCTCATCTCAAGATGTGTCTGAAACCAAACAGTCTGGAGACAGCAATTGCTCTGACGACCTGATTCCATATTCTCCATGCTTATACGATAGTATCTTAAACAGTCTACAAGATGACCACATAGAAGACATTCCTGGATTAACAGATGCTTACAATTCGGAAGAAAGCCTGGATGAACTCTTAGATGTTNTAAAGTGTGACGCGTGTGATGATTTATCCACAGGAATTCTCTCTTAACATTNTTCAGACCCCGTGATCTTGTCACTTAAATCCTTGGCTATAGTGGCNGTGTACATATGACTNTATCAATTTACTTATTTATCTCATGG] [+] EMBL CD083207 [GNAGCCAANATTCGGCACGAGGCCTTAACCGGGAGGCAGCTCAGAAAGCACGTGATCGCAGAAAAGATTTGATGGAGAGTATGGAGGAAAATCTAGCTTATCTCCGTTGGGAAAATGATTACCTGAAATCCTCAAACCGAATGCTCCGCCTTAAGTTTGTTGAACAAGAGCAAAAATTCCAAGCACTGCAAGAAAAACTAAGTGGTATTATCAGACATGTGGAGAAGTTTTCTGGAAGTCAGATTGAGCCACCAGAGTCAGCTGAACTCCTCCCTCTGCAGAAGGGAGTGGCTCTCTGTCTGTCCGTTCTACTCTTCCTCCACCTCTACAATGGCCTGGAGAATGCGTCCAAAACTCCAGTCTCGAGGATGTGCCTGAAGATATATCATCAACTTTGTTTGATGCTCAAACCGTCGAAGTCTCATCTCAAGATGTGTCTGAAACCAAACAGTCTGGAGACAGCAATTGCTCTGACGACCTGATTCCATATTCTCCATGCTTATACGATAGTATCTTAAACAGTCTACAAGATGACCACATAGAAGACATTCCTGGATTAACAGATGCTTACAATTCGGAAGAAAGCCTGGATGAACTCTTAGATGTTNTAAAGTGTGACGCGTGTGATGATTTATCCACAGGAATTCTCTCTTAACATTNTTCAGACCCCGTGATCTTGTCACTTAAATCCTTGGCTATAGTGGCNGTGTACATATGACTNTATCAATTTACTTATTTATCTCATGG] [+] EMBL CD170032 [ GCACGTGATCGCAGAAAAGATTTGATGGAGAGTATGGAGGAAAATCTAGCTTATCTCCGTTGGGAAAATGATTACCTGAAATCCTCAAACCGAATGCTCCGCCTTAAGTTTGTTGAACAAGAGCAAAAATTCCAAGCACTGCAAGAAAAACTAAGTGGTATTATCAGACATGTGGAGAAGTTTTCTGGAAGTCAGATTGAGCCACCAGAGTCAGCTGAACTCCTCCCTCTGCAGAAGGGAGTGGCTCTCTGTCTGTCCGTTCTACTCTTCCTCCACCTCTACAATGGCCTGGAGAATGCGTCCAAAACTCCAGT ] [-] EMBL CD137606 [ CACGTGATCGCAGAAAAGATTTGATGGAGAGTATGGAGGAAAATCTAGCTTATCTCCGTTGGGAAAATGATTACCTGAAATCCTCAAACCGAATGCTCCGCCTTAAGTTTGTTGAACAAGAGCAAAAATTCCAAGCACTGCAAGAAAAACTAAGTGGTATTATCAGACATGTGGAGAAGTTTTCTGGAAGTCAGATTGAGCCACCAGAGTCAGCTGAACTCCTCCCTCTGCAGAAGGGAGTGGCTCTCTGTCTGTCCGTTCTACTCTTCCTCCACCTCTACAATGGCCTGGAGAATGCGTCCAAAACTCCAGTCTCGAGGATGTGCCTGAAGATATATCATCAAC ] [-] EMBL CD142981 [ TGATTACCTGAAATCCTCAAACCGAATGCTCCGCCTTAAGTTTGTCGAACAAGAGCAAAAATTCCAAGCACTGCAAGAAAAACTAAGTGGTATTATCAGACATGTGGAGAAGTTTTCTGGAAGTCAGATTGAGCCACCAGAGTCAGCTGAACTCCTCCCTCTGCAGAAGGGAGTGGCTCTCTGTCTGTCCGTTCTACTCTTCCTCCACCTCTACAATGGCCTGGAGAATGCGTCCAAAACTCCAGTCTCGAGGATGTGCCTGAAGATATATCATCAACTTTGTTTGATGCCCAAGCCGTCGAAGTCTCATCTCAAGATGTGTCTGAAA ] consensusID : consensus_11018#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 527 fasta sequence [GTTACCTTGTCCTAGTGATAGGGTAGCTTTGGTTCGAAAGTCGCTGCCTTACCCAGAACCCTCCACTATTCTGTCACACAGGAAGCGAGCTAGGTTGGATAATCTTACCGAGGAGGAGAAAATCATCCGGAGAAAAATACTTAACCGGGAGGCAGCTCAGAAAGCACGTGATCGCAGAAAAGATTTGATGGAGAGTATGGAGGAAAATCTAGCTTATCTCCGTTGGGAAAATGATTACCTGAAATCCTCAAACCGAATGCTCCGCCTTAAGTTTGTTGAACAAGAGCAAAAA-TTCCAAGCACTGCAAGAAAAACTAAGTGGTATTATCAGACATGTGGAGAAGTTTTCTGGAAGTCAGATTGAGCCACCAGAGTCAGCAGAAGGGAGTGGCTCTCTGTCTGTCCGTTCTACTCTTCCTCCACCTCTACAATGGCCTGGAGAATGCGTCCAAAACTCCAGTCTCGAGGATGTGCCTGAAGATATATCATCAACTNTGTTTGATGCTCAAACCGTCGAAGTCTCATCTC] [+] EMBL AI975079 [GTTACCTTGTCCTAGTGATAGGGTAGCTTTGGTTCGAAAGTCGCTGCCTTACCCAGAACCCTCCACTATTCTGTCACACAGGAAGCGAGCTAGGTTGGATAATCTTACCGAGGAGGAGAAAATCATCCGGAGAAAAATACTTAACCGGGAGGCAGCTCAGAAAGCACGTGATCGCAGAAAAGATTTGATGGAGAGTATGGAGGAAAATCTAGCTTATCTCCGTTGGGAAAATGATTACCTGAAATCCTCAAACCGAATGCTCCGCCTTAAGTTTGTTGAACAAGAGCAAAAA TTCCAAGCACTGCAAGAAAAACTAAGTGGTATTATCAGACATGTGGAGAAGTTTTCTGGAAGTCAGATTGAGCCACCAGAGTCAGCAGAAGGGAGTGGCTCTCTGTCTGTCCGTTCTACTCTTCCTCCACCTCTACAATGGCCTGGAGAATGCGTCCAAAACTCCAGTCTCGAGGATGTGCCTGAAGATATATCATCAACTNTGTTTGATGCTCAAACCGTCGAAGTCTCATCTC] [+] EMBL AI976031 [GTTACCTTGTCCTAGTGATAGGGTAGCTTTGGTTCGAAAGTCGCTGCCTTACCCAGAACCCTCCACTATTCTGTCACACAGGAAGCGAGCTAGGTTGGATAATCTTACCGAGGAGGAGAAAATCATCCGGAGAAAAATACTTAACCGGGAGGCAGCTCAGAAAGCACGTGATCGCAGAAAAGATTTGATGGAGAGTATGGAGGAAAATCTAGCTTATCTCCGTTGGGAAAATGATTACCTGAAATCCTCAAACCGAATGCTCCGCCTTAAGTTTGTTGAACAAGAGCAAAAATTTCCAAGCACTGCAAGATAAACTAAGTGGTATTATCAGACATGTGGAGAAGTTTTCTGGAAGTCAGATTGAGCCACCAGAGTCAGCAGAAGGGAGTGGCTCTCTGTCTGTCCGTTCTACTCTTCCTCCACCTCTACAATGGCCTGGAGAATGCGTCCAAAACTCCAGTCTCGACGATGTGCCTGAAGATATATCATCAACTGTGTT ] [+] EMBL CD138854 [ ATCATCCGGAGAAAAATACTTAACCGGGAGGCAGCTCAAAAAGCACGTGATCGCAGAAAAGATTTGATGGAGAGTATGGAGGAAAATCTAGCTTATCTCCGTTGGGAAAATGATTACCTGAAATCCTC ] consensusID : consensus_11018#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 471 fasta sequence [GTCGCGGGAATTCATTATAAAATCCACGTTGGCTATAGTGGCGTTGTACATATGACTTTATCAATTTACTTATTTATCTCATTGTCTTCACTCTAAATCTATCGTTTTAATTTTGATAACTTAGTGCTTGGGATTTACCCGATAAAACAATGCGGTCCTAAGAAGTGGAGAGATGTCCGTCGCTTTATTATTCGCTAGTGCAATATTAGTCGCACGTACTTGGTAACGCATGCTTTGGTTTTGTCCACAAATTGTACTGCCTGTTGTATCTAGGTTTCGTAATGCCTTACCAGGTGCGTCCAAGAAACTAATTACATACGAATTTTCAGAATGTCATGCTTGGGCGACTGTGATTCGATAACTANGAGCCAGACAGTTATTCTCGGGAGGATAGTCTCCACTGAAAAGAGGACTGACATGTTGGTATTTATTACCAACTATTCTGGTATGTTGTCTTGCGAGCTAACTTGA] [+] EMBL CD115445 [GTCGCGGGAATTCATTATAAAATCCACGTTGGCTATAGTGGCGTTGTACATATGACTTTATCAATTTACTTATTTATCTCATTGTCTTCACTCTAAATCTATCGTTTTAATTTTGATAACTTAGTGCTTGGGATTTACCCGATAAAACAATGCGGTCCTAAGAAGTGGAGAGATGTCCGTCGCTTTATTATTCGCTAGTGCAATATTAGTCGCACGTACTTGGTAACGCATGCTTTGGTTTTGTCCACAAATTGTACTGCCTGTTGTATCTAGGTTTCGTAATGCCTTACCAGGTGCGTCCAAGAAACTAATTACATACGAATTTTCAGAATGTCATGCTTGGGCGACTGTGATTCGATAACTANGAGCCAGACAGTTATTCTCGGGAGGATAGTCTCCACTGAAAAGAGGACTGACATGTTGGTATTTATTACCAACTATTCTGGTATGTTGTCTTGCGAGCTAACTTGA] [+] EMBL CD164961 [ AAATCTATCGTTTTAATTTTGATAACTTAGTGCTTGGGATTTACCCGATAAAACAATGCGGTCCTAAGAAGTGGAGAGATGTCCGTCGCTTTATTATTCGCTAGTGCAATATTAGTCGCACGTACTTGGTAACGCATGCTTTGGTTTTGTCCACAAATTGTACTGCCAGTTGTATCTAGGTTTCGTAATGCCTTACCAGGTGCGTCCAAGAAACTAATTACATACGAATTTTCAGAATGTCATGCTTGGGCGACTGTGATTCGATAACTAGGAGCCAGACAGTTATTCTCGGGAGGATAGTCTCCACTGAAAAGAGGACTGACATGTTGGTATTTATTACCNACTATTCTGGTATGTTGTCTTGCGAGCTAACTTGA] [+] EMBL CD115323 [ TTTTCAGAATGTCATGCTTGGGCGACTGTGATTCGATAACTAAGAGCCAGACAGTTATTCTCGGGAGGATAGACTCCACTGAAAAGAGGACTGACATGTTGGTATTTATTACCAACTATTCTGGCTTGTTGCCCTGCGAGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11018#1 ------------------------------------------------------------ consensus_11018#2 ------------------------------------------------------------ consensus_11018#0 GGCCGGCAGGGAGAGCGTTGTGATTTTTGTTGCATAGTGATGTGGAGTCCTGTTGTTGTC 60 consensus_11018#3 ------------------------------------------------------------ consensus_11018#1 ------------------------------------------------------------ consensus_11018#2 -----------GTTACCTTGTCCTAGTGATAGGGTAGCTTTGGTTCGAAAGTCGCTGCCT 49 consensus_11018#0 ACCGTTGGAGGGTTACCTTGTCCTAGTGATAGGGTAGCTTTGGTTCGAAAGTCGCTGCCT 120 consensus_11018#3 ------------------------------------------------------------ consensus_11018#1 ------------------------------------------------------------ consensus_11018#2 TACCCAGAACCCTCCACTATTCTGTCACACAGGAAGCGAGCTAGGTTGGATAATCTTACC 109 consensus_11018#0 TACCCAGAACCCTCCACTATTCTGTCACACAGGAAGCGAGCTAGGTTGGATAATCTTACC 180 consensus_11018#3 ------------------------------------------------------------ consensus_11018#1 -----GNAGCCAAN-ATTCGGCACGAGGC-CTTAACCGGGAGGCAGCTCAGAAAGCACGT 53 consensus_11018#2 GAGGAGGAGAAAATCATCCGGAGAAAAATACTTAACCGGGAGGCAGCTCAGAAAGCACGT 169 consensus_11018#0 GAGGAGGAGAAAATCATCCGGAGAAAAATACTTAACCGGGAGGCAGCTCAGAAAGCACGT 240 consensus_11018#3 -----------------------------------------------------GTCGCGG 7 * ** consensus_11018#1 GATCGCAGAAAAGATTTGATGGAGAGTATGGAGGAAAATCTAGCTTATCTCCGTTGGGAA 113 consensus_11018#2 GATCGCAGAAAAGATTTGATGGAGAGTATGGAGGAAAATCTAGCTTATCTCCGTTGGGAA 229 consensus_11018#0 GATCGCAGAAAAGATTTGATGGAGAGTATGGAGGAAAATCTAGCTTATCTCCGTTGGGAA 300 consensus_11018#3 GAATTCATTATAAAATCCACGTTGGCTATAGTGGCGTTGTACATATGACTTTATCAATTT 67 ** ** * * * * * * * *** * ** * ** * consensus_11018#1 AATGATT-ACCTGAA-ATCCTCAAACCGAATGCTCCGCCTTAAGTTTGTTGAACAAGAGC 171 consensus_11018#2 AATGATT-ACCTGAA-ATCCTCAAACCGAATGCTCCGCCTTAAGTTTGTTGAACAAGAGC 287 consensus_11018#0 AATGATT-ACCTGAA-ATCCTCAAACCGAATGCTCCGCCTTAAGTTTGTTGAACAAGAGC 358 consensus_11018#3 ACTTATTTATCTCATTGTCTTCACTCTAAATCTATCGTTTTAATTTTGATAACTTAGTGC 127 * * *** * ** * ** *** * *** ** **** **** * * ** ** consensus_11018#1 AAAAATTCCAAGCACTGCAAGAAAAACTAAGTGGTATTATCAGACATGTGGAGAAGTTTT 231 consensus_11018#2 AAAAATTCCAAGCACTGCAAGAAAAACTAAGTGGTATTATCAGACATGTGGAGAAGTTTT 347 consensus_11018#0 AAAAATTCCAAGCACTGCAAGAAAAACTAAGTGGTATTATCAGACATGTGGAGAAGTTTT 418 consensus_11018#3 TTGGGATTTACCCGAT------AAAACAATGCGGTCCTA--AGAAGTGGAGAGATGTCCG 179 * * * * ***** * * *** ** *** ** **** ** consensus_11018#1 CTG----GAAGTCAGATTGAGCCACCAGAGTCAGCTGAACTCCTCCCTCTGCAGAAGGGA 287 consensus_11018#2 CTG----GAAGTCAGATTGAGCCACCAGAGTCAGC-----------------AGAAGGGA 386 consensus_11018#0 CTG----GAAGTCAGATTGAGCCACCAGAGTCAGCTGAACTCCTCCCTCTGCAGAAGGGA 474 consensus_11018#3 TCGCTTTATTATTCGCTAGTGCAATATTAGTCGCACGTACTTGGTAACGCATGCTTTGGT 239 * * * * * ** * **** ** consensus_11018#1 GTGGCTCTCTGTCTGTCCGTTCTACTCTTCCTCCACCTCTACAATGGCCTGGAGAATGCG 347 consensus_11018#2 GTGGCTCTCTGTCTGTCCGTTCTACTCTTCCTCCACCTCTACAATGGCCTGGAGAATGCG 446 consensus_11018#0 GTGGCTCTCTGTCTGTCCGTTCTACTCTTCCTCCACCTCTACAATGGCCTGGAGAATGCG 534 consensus_11018#3 TTTGTCCACAAATTGTACTGCCTGTTGTATCTAGGTTTC-GTAATGCCTTACCAGGTGCG 298 * * * * *** * ** * * ** ** **** * * **** consensus_11018#1 TCCAAAACTCCAGTCTCG-AGGATGTGCCTGAAG---ATATATCATCAACTTTG-TTTGA 402 consensus_11018#2 TCCAAAACTCCAGTCTCG-AGGATGTGCCTGAAG---ATATATCATCAACTNTG-TTTGA 501 consensus_11018#0 TCCAAAACTCCAGTCTCG-AGGATGTGCCTGAAG---ATATATCATCAACTTTG-TTTGA 589 consensus_11018#3 TCCAAGAAACTAATTACATACGAATTTTCAGAATGTCATGCTTGGGCGACTGTGATTCGA 358 ***** * * * * * * ** * * *** ** * * *** ** ** ** consensus_11018#1 TGCTCAAACCGTCGAAGTCTCATCTCAAGATGTGTCTGAAACCAAACAGTCTGGAGACAG 462 consensus_11018#2 TGCTCAAACCGTCGAAGTCTCATCTC---------------------------------- 527 consensus_11018#0 TGCTCAAACCGTCGAAGTCTCATCTCAAGATGTGTCTGAAACCAAACAGTCTGGAGACAG 649 consensus_11018#3 TAACTANGAGCCAGACAGTTATTCTCGGGAGGATAGTCTCCACTGAAAAGAGGACTGACA 418 * * ** * **** consensus_11018#1 CAATTGCTCTGACGACCTGATTCCATATTCTCCATGCTTATACGATAGTATCTTAAACAG 522 consensus_11018#2 ------------------------------------------------------------ consensus_11018#0 CAATTGCTCTGACGACCTGATTCCATATTCTCCATGCTTATACGATAGTATCTTAAACAG 709 consensus_11018#3 TGTTGGTATTTATTACCAACTATTCTGGTATGTTGTCTTGCGAGCTAACTTGA------- 471 consensus_11018#1 TCTACAAGATGACCACATAGAAGACATTCCTGGATTAACAGATGCTTACAATTCGGAAGA 582 consensus_11018#2 ------------------------------------------------------------ consensus_11018#0 TCTACAAGATGACCACATAGAAGACATTCCTGGATTAACAGATGCTTACAATTCGGAAGA 769 consensus_11018#3 ------------------------------------------------------------ consensus_11018#1 AAGCCTGGATGAACTCTTAGATGTTNTAAAGTGTGACGCGTGTGATGATTTATCCACAGG 642 consensus_11018#2 ------------------------------------------------------------ consensus_11018#0 AAGCCTGGATGAACTCTTAGATGTTTTAAAGTGTGACGCGTGTGATGATTTATCCACAGG 829 consensus_11018#3 ------------------------------------------------------------ consensus_11018#1 AATTCTCTCTTAACATTNTTCAGACCCCGTGATCTTGTCACTTAAATCCTTGGCTATAGT 702 consensus_11018#2 ------------------------------------------------------------ consensus_11018#0 AATTCTCTCTTAACATTTTTCAGACCCCGTGATCTTGTCACTTAAATCCTTGGCTATAGT 889 consensus_11018#3 ------------------------------------------------------------ consensus_11018#1 GGCNGTGTACATATGACTNTATCAATTTACTTATTTATCTCATGG--------------- 747 consensus_11018#2 ------------------------------------------------------------ consensus_11018#0 GGCGTTGTACATATGACTTTATCAATTTACTTATTTATCTCATTGTCTCACTCTAAATCT 949 consensus_11018#3 ------------------------------------------------------------ consensus_11018#1 ------------------------------------------------------------ consensus_11018#2 ------------------------------------------------------------ consensus_11018#0 ATCGTTTAATTTTGATACTTAGTGCTGGGATTTANCCGATAAAACAATGCGGTCTAAAGA 1009 consensus_11018#3 ------------------------------------------------------------ consensus_11018#1 ------------------------------------------------------------ consensus_11018#2 ------------------------------------------------------------ consensus_11018#0 AGTGGAGAGATGTCCGTCGCTNTATTATTCGCTAGTGCAATATTAGTCGCACGTACTTGG 1069 consensus_11018#3 ------------------------------------------------------------ consensus_11018#1 ------------------------------------------------------------ consensus_11018#2 ------------------------------------------------------------ consensus_11018#0 TAACGCATGCTTTGGTTATGTCCACAAATTGTACTGCCAGTTGTATCTAGGTTTCGTAAT 1129 consensus_11018#3 ------------------------------------------------------------ consensus_11018#1 ------------------------------------------------------------ consensus_11018#2 ------------------------------------------------------------ consensus_11018#0 GCCTTACCAGGTGCGTCCAAGAAACTAATTACATACGAATTTTCAGAATGTCATGCTTGG 1189 consensus_11018#3 ------------------------------------------------------------ consensus_11018#1 ------------------------------------------------------------ consensus_11018#2 ------------------------------------------------------------ consensus_11018#0 GCGACTGTGATTCGATAACTAGGAGCCAGACAGTTATTCTCGGGAGGATAGTCTCCACTG 1249 consensus_11018#3 ------------------------------------------------------------ consensus_11018#1 ------------------------------------------------------------ consensus_11018#2 ------------------------------------------------------------ consensus_11018#0 AAAAGAGGACTGACATGTTGGTATTTATTACCAACTATTCTGGTATGTTGTCTTGCGAGC 1309 consensus_11018#3 ------------------------------------------------------------ consensus_11018#1 ------------------------------------------------------------ consensus_11018#2 ------------------------------------------------------------ consensus_11018#0 TAACTTGATGTTTACGAGACGTCCTGTATTGTAAGGATTTGGTGCCGAGTCTAGTTGGGA 1369 consensus_11018#3 ------------------------------------------------------------ consensus_11018#1 ------------------------------------------------------------ consensus_11018#2 ------------------------------------------------------------ consensus_11018#0 TGTGTGAGATCCCAACTTGTGATGCGTGGTAAAACATTCGGTGACGTCACTGACATTTCA 1429 consensus_11018#3 ------------------------------------------------------------ consensus_11018#1 ------------------------------------------------------------ consensus_11018#2 ------------------------------------------------------------ consensus_11018#0 TAATGTTGGCCTAGGGTGCTAGTAAAGTCGCGCGTTTAGTGGACTTATCCAGATTTGTTA 1489 consensus_11018#3 ------------------------------------------------------------ consensus_11018#1 ------------------------------------------------------------ consensus_11018#2 ------------------------------------------------------------ consensus_11018#0 TGGGGAGTTAGGATGATAATATATTTAGGGTCCTGATTTAGTGTGTACGGGACGTTGGTT 1549 consensus_11018#3 ------------------------------------------------------------ consensus_11018#1 ------------------------------------------------------------ consensus_11018#2 ------------------------------------------------------------ consensus_11018#0 GTCTGTCCTGGCCACTGACCACGTTAGACCCCGTTGCCGGCTGTTTTCGAGCCTGATGGT 1609 consensus_11018#3 ------------------------------------------------------------ consensus_11018#1 ------------------------------------------------------------ consensus_11018#2 ------------------------------------------------------------ consensus_11018#0 TGCAGTCCGCTGGTCAACTACTTAATGGGCAAGATGGAGTGGGGTGCTGACTAAGCGTGT 1669 consensus_11018#3 ------------------------------------------------------------ consensus_11018#1 ------------------------------------------------------------ consensus_11018#2 ------------------------------------------------------------ consensus_11018#0 CATACTTGTTCTAGTCGTCAGTGAAAGTTGAAGTAAGACTGGCCGTTTCCAGTATTGAGG 1729 consensus_11018#3 ------------------------------------------------------------ consensus_11018#1 --------------------------------------- consensus_11018#2 --------------------------------------- consensus_11018#0 TTGGGCTCCGTCAATCCGCGTTCTCACAATCCAATTCCC 1768 consensus_11018#3 --------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||