These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11021#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 19 consensus length = 1403 fasta sequence [TAGTGGTAGTAATAGTAGACATTGTCATTTCATTTAGTTGTAAGCATTGTGTTGTCTGTTTGTGTGAGGGCAGGCAACAATTATTATCATTATTACCGTTGTAATTATTTTATGAAAAGCTAAATACAACAATTAATCCTACTGTTACTACCGAAAAACTATGGTGGCTAAAGATTTCATTGAACTTTTCGCAAAATTCAACTATGCTAATCGTGTTGCAGTTGAAGATTTCTCAGATCGATTGAGCTTATTTACGGTAGTTTTATTCTTGATCGCTTGTATAATTGTATCGGCCAAACAATATTTTCTAAATTCAATCTCATGTTATATTCCTGTTAAACCGACTGGTGAAAATTATAATTCATATTTAACTGATTACTGTTGGGTTCATGGAACTATTCCATTGAGACCTGATGAACCGATGCCAAGCACACCGAAAGAATGGGAACAATATGATCAATTAAGGCGTATAACCTATTATCAGTGGGTCCCATTTGTTCTCGGGCTGCAATGTATATTTTTCTACATTCCACATATTGCATGG-CAGGCTGTATGCGCCCATAGATCCGGTGGAG-ATTTGTTCGCTCTTGTGAAAGCCGCTGCTGATGCCGCAATTTCTGAACGTGGTTCCCGTAAGAGTCAAGTTAAACGTGTGGCTGAATTTTTGGAAGATATGATTGATGGTCATAAGGATTGTCGACATGGTCGTCGGATGAATTTAACTAGACGTGCATATGACATGTGTGGTATATGTGTTGTTAGTAAACGACTTGGAACATGCCTTGTATTCTCATATTTATGTGTTAAAATCATAACAATTATCAATGCAATTATGCAAGTATATTTGATTCAACGTTTTCTTGGTTTCTATGCTGATGGAAGTGCCGGACAGAAAAGTATGCAATTAGGGAAACCATACGAAACTAACTCGGCAGTTACAGCGATGTCGAATCAAGAAAATGAAGATTTAGAAGGTTTCGGATTCGGATTAACTGTTGCCAACCATATACGTGCTGGACGCGATTGGCCAGAGACAATTCTATTCCCACGTGTAGCTTATTGTCGTGTCCCAGGTATTCGCTTAGTAGGTGCTGAAAATGCTTATACTGCACAATGTGCATTACCTATAAATATGTTAAACGAGAAAA-TTATATATTTTTCTGGTTTTGGATCTGTTTCCTCATAGCTGCCAGTATATTTAGTTTACTACTATGGTTAGTAAGAATGGTTATTGCACCAAGGCGTAAAGATTTTATTAAACGTTTCTTACGTATTAAAGGAATACGTTCAAGAACTGGTCAGGAGATTACGCGTGCTGATTTAGACGAATTCATTGATGATTACCTTCGCCGAGATGGCGTATTTTTAGTACGTATGCTGGCCATCAACGCTGGTGATGTGAT] [+] EMBL CD180962 [TAGTGGTAGTAATAGTAGACATTGTCATTTCATTTAGTTGTAAGCATTGTGTTGTCTGTTTGTGTGAGGGCAGGCAACAATTATTATCATTATTACCGTTGTAATTATTTTATGAAAAGCTAAATACAACAATTAATCCTACTGTTACTACCGAAAAACTATGGTGGCTAAAGATTTCATTGAACTTTTCGCAAAATTCAACTATGCTAATCGTGTTGCAGTTGAAGATTTCTCAGATCGATTGAGCTTATTTACGGTAGTTTTATTCTTGATCGCTTGTATAATTGTATCGGCCAAACAATATTTTCTAAATTCAATCTCATGTTATATTCCTGTTAAACCGACTGGTGAAAATTATAATTCATATTTAACTGATTACTGTTGGGTTCATGGAACTATTCCATTGAGACCTGATGAACCGATGCCAAGCACACCGAAAGAATGGGAACAATATGATCAATTAAGGCGTATAACCTATTATCAGTGGGTCCCATTTGTTCTCGGGCTGCAATGTATATTTTTCTACATTCCACATATTGCATGG CAGGCTGTATGC ] [+] EMBL BF936803 [ TTCATTTAGTTGTAAGCATTGTGTTGTCTGTTTGTGTGAGGGCAGGCAACAATTATTATCATTATTACCGTTGTAATTATTTTATGAAAAGCTAAATACAACAATTAATCCTACTGTTACTACCGAAAAACTATGGTGGCTAAAGATTTCATTGAACTTTTCGCAAAATTCAACTATGCTAATCGTGTTGCAGTTGAAGATTTCTCAGATCGATTGAGCTTATTTACGGTAGTTTTATTCTTGATCGCTTGTATAATTGTATCGGCCAAACAATATTTTCTAAATTCAATCTCATGTTATATTCCTGTTAAACCGACTGGTGAAAATTATAATTCATATTTAACTGATTACTGTTGGGTTCATGGAACTATTCCATTGAGACCTGATGAACCGATGCCAAGCACACCGAAAGAATGGGAACAATATGATCAATTAAGGCGTATAACCTATTATCAGTGGGTCCCATTTGTTCTCGGGCTGCAATGTATATTTTTCTACATTCCACATATTGCATGGCCAGGCTGTATGCGCCCATAGATCCGGTGGAGAATTTGTTCGCTCTTGTGAAAGCCGCTGCTGATGCCGCGATTTCTGAACGTGGTTCCCGTAAGAGTCAAt ] [-] EMBL CD191868 [ TATCGGCCAAACAATATTTTCTAAATTCAATCTCATGTTATATTCCTGTTAAACCGACTGGTGAAAATTATAATTCATATTTAACTGATTACTGTTGGGTTCATGGAACTATTCCATTGAGACCTGATGAACCGATGCCAAGCACACCGAAAGAATGGGAACAATATGATCAATTAAGGCGTATAACCTATTATCAGTGGGTCCCATTTGTTCTCGGGCTGCAATGTATATTTTTCTACATTCCACATATTGCATGG CAGGCTGTATGCGCCCATAGATCCGGTGGAG ATTTGTTCGCTCTTGTGAAGGCCGCTGCTGATGCCGCAATTTCTGAACGTGGTTCCCGTAAGAGTCAAGTTAAACGTGTGGCTGAATTTTTGGAAGATATGATTGATGGTCATAAGGATTGTCGACATGGTCGTCGGATGAATTTAACTAGACGTGCATATGACATGTGTGGTATATGTGTTGTTAGTAA ] [+] EMBL CD152380 [ AACTGATTACTGTTGGGTTCATGGAACTATTCCATTGAGACCTGATGAACCGATGCCAAGCACACCGAAAGAATGGGAACAATATGATCAATTAAGGCGTATAACCTATTATCAGTGGGTCCCATTTGTTCTCGGGCTGCAATGTATATTTTTCTACATTCCACATATTGCATGG CAGGCTGTATGCGCCCATAGATCCGGTGGAG ATTTGTTCGCTCTTGTGAAAGCCGCTGCTGATGCCGCAATTTCTGAACGTGGTTCCCGTAAGAGTCAAGTTGAACGTGTGGCTGAATTTTTGGAAGATATGATTGATGGTCATAAGGATTGTCGACATGGTCGTCGGATGAATTTAACTAGACGTGCATATGACATGTGTGGTATATGTGTTGTTAGTAAACGACTTGGAACATGCCTTGTATTCTCATATTTATGTGTTA ] [+] EMBL CD152278 [ AACTGATTACTGTTGGGTTCATGGAACTATTCCATTGAGACCTGATGAACCGATGCCAAGCACACCGAAAGAATGGGAACAATATGATCAATTAAGGCGTATAACCTATTATCAGTGGGTCCCATTTGTCCTCGGGCTGCAATGTATATTTTTCTACATTCCACATATTGCATGG CAGGCTGTATGCGCCCATAGATCCGGTGGAG ATTTGTTCGCTCTTGTGAAAGCCGCTGCTGATGCCGCAATTTCTGAACGTGGTTCCCGTAAGAGTCAAGTTAAACGTGTGGCTGAATTTTTGGAAGATATGATTGATGGTCATAAGGATTGTCGACATGGTCGTCGGATGAATTTAACTAGACGTGCATATGACATGTGTGGTATATGTGTCGTTAGTAAACGACTTGGAACATGCCTTGTATTCTCATATTTATGTGTTTAAATCATA ] [+] EMBL CD192459 [ AATGGGAACAATATGATCAATTAAGGCGTATAACCTATTATCAGTGGGTCCCATTTGTTCTCGGGCTGCAATGTATATTTTTCTACATTCCACATATTGCATGG CAGGCTGTATGCGCCCATAGATCCGGTGGAG ATTTGTTCGCTCTTGTGAA ] [-] EMBL CD192161 [ ATGGGAACAATATGATCAATTAAGGCGTATAACCTATTATCAGTGGGTCCCATTTGTTCTCGGGCTGCAATGTATATTTTTCTACATTCCACATATTGCATGG CAGGCTGTATGCGCCCATAGATCCGGTGGAG ATTTGTTCGCTCTTGTGAAA ] [-] EMBL CD192102 [ ATGGGAACAATATGATCAATTAAGGCGTATAACCTATTATCAGTGGGTCCCATTTGTTCTCGGGCTGCAATGTATATTTTTCTACATTCCACATATTGCATGG CAGGCTGTATGCGCCCATAGATCCGGTGGAG ATTTGTTCGCTCTTGTGAAA ] [-] EMBL CD117144 [ AG ATTTGTTCGCTCTTGTGAAAGCCGCTGCTGATGCCGCAATTTCTGAACGTGGTTCCCGTAAGAGTCAAGTTAAACGTGTGGCTGAATTTTTGGAAGATATGATTGATGGTCATAAGGATTGTCGACATGGTCGTCGGATGAATTTAACTAGACGTGCATATGACATGTGTGGTATATGTGTTGTTAGTAAACGACTTGGAACATGCCTTGTATTCTCATATTTATGTGTTAAAATCATAACAATTATCAATGCAATTATGCAAGTATATTTGATTCAACGTTTTCTTGGTTTCTATGCTGATGGAAGTGCCGGACAGAAAAGTATGCAATTAGGGAAACCATACGAAACTAACTCGGCAGTTACAGCGATGTCGAATCAAGAAAATGAAGATTTAGAAGGTTTCGGATTCGGATTAACTGTTGCCAACCATATACGTGCTGGACGCGATTGGCCAGAGACAATTCTATTCCCACGTGTAGCTTATTGTCGTGTCCCAGGTATTCGCTTAGTAGGTGCTGAAAATGCTTATACTGCACA ] [-] EMBL CD116976 [ AG ATTTGTTCGCTCTTGTGAAAGCCGCTGCTGATGCCGCAATTTCTGAACGTGGTCCCCGTAAGAGTCAAGTTAAACGTGTGGCTGAATTTTTGGAAGATATGATTGATGGTCATAAGGATTGTCGACATGGTCGTCGGATGAATTTAACTAGACGTGCATATGACATGTGTGGTATATGTGTTGTTAGTAAACGACTTGGAACATGCCTTGTATTCTCATATTTATGTGTTAAAATCATAACAATTATCAATGCAATTATGCAAGTATATTTGATTCAACGTTTTCTTGGTTTCTATGCTGATGGAAGTGCCGGACAGAAAAGTATGCAATTAGGGAAACCATACGAAACTAACTCGGCAGTTACAGCGATGTCGAATCAAGAAAATGAAGATTTAGAAGGTTTCGGATTCGGATTAACTGTTGCCAACCATATACGTGCTGGACGCGATTGGCCAGAGACAATTCTATTCCCACGTGTAGCTTATTGTCGTGTCCCAGGTATTCGCTTAGTAGGTGCTGAAAATGCTTATACTGCACA ] [+] EMBL CD164466 [ TTTGTTCGCTCTTGTGAAAGCCGCTGCTGGTGCCGCAATTTCTGAACGTGGTTCCCGTAAGAGTCAAGTTAAACGTGTGGCTGAATTTTTGGAAGATATGATTGATGGTCATAAGGATTGTCGACATGGTCGTCGGATGAATTTGACTAGACGTGCATATGACATGTGTGGTATATGTGTTGTTAGTAAACGACTTGGAACATGCCTTGTATTCTCATATTTATGTGTTAAAATCATAACAATTATCAATGCAATTATGCAAGTATATTTGATTCAACGTTTTCTTGGTTTCTATGCTGATGGAAGTGCCGGACAGAAAAGTATGCAATTAGGGAAACCATACGAAACTAACTCGGCAGTTACAGCGATGTCGAATCAAGAAAATGAAGATTTAGAAGGTTTCGGATTCGGATTAACTGTTGCCAACCATATACGTGCTGGACGCGATTGGCCAGAGACAATTCTATTCCCACGTGTA ] [+] EMBL CD063447 [ TGATGGTCATAAGGATTGTCCCCATGGTCGTCGGATGAATTTAACTAGACGTGCATATGACATGTGTGGTATATGTGTTGTTAGTAAACGACTTGGAACATGCCTTGTATTCTCATATTTATGTGTTAAAATCATAACAATTATCAATGCAATTATGCAAGTATATTTGATTCAACGTTTTCTTGGTTTCTATGCTGATGGAAGTGCCGGACAAAAAAGTATGCAATTAGGGAAACCATACGAAACTAACTCGGCAGTTACAGCGATGTCGAATCAAGAAAATGAAGATTTAGAAGGTTTC ] [+] EMBL CD066959 [ TGGTCGTCGGATGAATTTAACTAGACGTGCATATGACATGTGTGGTATATGTGTTGTTAGTAAACGACTTGGAACATGCCTTGTATTCTCATATTTATGTGTTAAAATCATAACAATTATCAATGCAATTATGCAAGTATATTTGATTCAACGTTATCTTGGTTTCTATGCTGATGGAAGTGCCGGACAGAAAAGTATGCAATTAGGGAAACCATACGAAACTAACTCGGCAGTTACAGCGATGTCGAATCAAGAGAATGAAGATTTAGAACGTTTCGGATTCGGATTAACTGTTGCCAACCATATACG ] [-] EMBL CD152228 [ AATTTAACTAGACGTGCATATGACATGTGTGGTATATGTGTTGTTAGTAAACGACTTGGAACATGCCTTGTATTCTCATATTTATGTGTTAAAATCATAACAATTATCAATGCAATTATGCAAGTATATTTGATTCAACGATTTCTTGGTTTCTATGCTGATGGAAGTGCCGGACAGAAAAGTATGCAATTAGGGAAACCATACGAAACTAACTCGGCAGTTACAGCGATGTCGAATCAAGAAAATGAAGATTTAGAAGGTTTCGGATTCGGATTAACTGTTGCCAACCATATACGTGCTGGACGCGATTGGCCAGAGACAATTCTATTCCCACGTGTAGCTTATTGTCGTGTCCCAGGTATTCGCTTAGTAGGTGCTGAAAATGCTTATACTGCACAATGTGCATTACCTATAAATATGTTAAACGAGAAAA TTATATATTTTTCTGGTTTT ] [+] EMBL CD095681 [ CTAGACGTGCATATGACATGTGTGGTATATGTGTTGTTAGTAAACGACTTGGAACATGCCTTGTATTCTCATATTTATGTGTTAAAATCATAACAATTATCAATGCAATTATGCAAGTATATTTGATTCAACGTTTTCTTGGTTTCTATGCTGATGGAAGTGCCGGACAGAAAAGTATGCAATTAGGGAAACCATACGAAACTAACTCGGCAGTTACAGCGATGTCGAATCAAGAAAATGAAGATTTAGAAGGTTTCGGGTTCGGATTAACTGTTGCCAACCATATACGTGCTGGACGCGATTGGCCAGAGACAATTCTATTCCCACGTGTAGCTTATTGTCGTGTCCCAGGTATTCGCTTAGTAGGTGCTGAAAATGCTTATACTGCACAATGTGCATTACCTATAAATATGTTAAACGAGAAAATTTATATATTTTTCTGGTTT ] [-] EMBL CD146796 [ AATCATAACAATTATCAATGCAATTATGCAAGTATATTTGATTCAACGTTTTCTTGGTTTCTATGCTGATGGAAGTGCCGGACAGAAAAGTATGCAATTAGGGAAACCATACGAAACTAACTCGGCAGTTACAGCGATGTCGAATCAAGAAAATGAAGATTTAGAAGGTTTCGGATTCGGATTAACTGTTGCCAACCATATACGTGCTGGACGCGATTGGCCAGAGACAATTCTATTCCCACGTGTAGCTTATTGTCGTGTCCCAGGTATTCGCTTAGTAGGTGCTGAAAATGCTTATACTGCACAATGTGCATTACCTATAAATATGTTAAACGAGAAAATTTATATATTTTTCTGGTTTT ] [+] EMBL CD117855 [ CCATACGAAACTAACTGGGCGGTTACAGCGATGTCGAATCAAGAAAATGAAGATTTAGAAGGTTTCGGATTCGGATTAACTGTTGCCAACCATATACGTGCTGGACGCGACTGGCCAGAGACAATTCTATTCCCACGTGTAGCTTATTGTCGTGTCCCAGGTATTCGCTTAGTAGGTGCTGAAAATGCTTATACTGCACAATGTGCATTACCTATAAATATGTTAAACGAGAAAATTTATATATTTTTCTGGTTTTGGATCTGTTTCCT ] [+] EMBL CD066941 [ TTTAGAAGGTTTCGGATTCGGATTAACTGTTGCCAACCATATACGTGCTGGACGCGATTGGCCAGAGACAATTCTATTCCCACGTGTAGCTTATTGTCGTGTCCCAGGTATTCGCTTAGTAGGTGCTGAAAATGCTTATACTGCACAATGTGCATTACCTATAAATATGTTAAACGAGAAAATTTATATATTTTTCTGGGTTTGGATCTGTTTCCCCATAGCTGCCAGTATATTTAGTTTACTACTATGGTTAGTAAGAATGGTTATTGCACCAAGGCGTAAAGATTTTATTAAACGTTTCTTACGTATTAAAGGAATACGTTCAAGAACTGGTCAGGAGATTACGCGTGCTGATTTAGACGAATTCATTGATGATTACCTTCGCCGAGATGGCGTATTTTTAGTACGTATGCTGGCCATCAACGCTGGTGATGTGAT] [+] EMBL CD178817 [ TTAACTGTTGCCAACCATATACGTGCTGGACGCGATTGGCCAGAGACAATTCTATTCCCACGTGTAGCTTATTGTCGTGTCCCAGGTATTCGCTTAGTAGGTGCTGAAAATGCTTATACTGCACAATGTGCATTACCTATAAATATGTTAAACGAGAAAATTTATATATTTTTCTGGTTTTGGATCTGTTTCCTCATAGCTGCCAGTATATTTAGTTTACTACTATGGTTAGTAAGAATGGTTATTGCACCAAGGCGTAAAGATTTTATTAAACGTTTCTTACGTATTAAAGGAATACGTTCAAGAACTGGTCAGGAGATTACGCGTGCTGATTTAGACGAATTCA ] consensusID : consensus_11021#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1009 fasta sequence [CCAGGCCANAATTCGGCACGAGGTGCACCAAGGCGTAAAGATTTTATTAAACGTTTCTTACGTATTAAAGGAATACGTTCAAGAACTGGTCAGGAGATTACGCGTGCTGATTTAGACGAATTCATTGATGATTACCTTCGCCGAGATGGCGTATTTTTAGTACGTATGCTGGCCATCAACGCTGGTGATGTGATCACATCTGAAATTGTTATGGCTTTATATGAACATTACATTGATAATGTTTATTCAGTGGATAATACCCCACAGAAAAGTCTAGAGAAAGAACCATTGAAAGATGGATCAGGTATACCATCAAATTATGTGTAAAGTTATTCTTGTGTCCTCTCCTATATATGTGTATTTTTCATTCCTCAACTATTGCTCATCAGTATATAGTTACACTATAGCAGTATTACAAACAATAGTAATAGTATCTTACTAGGTAAAAGCTTAGCAAGGAGGTGTACAACACAAAATTGATTTTTCTTTCTCCGAATATAACAAATCTATTTTTAATTCTTGTTATATTGTATTATGGTTGTTGTTTGCACAGTTTAGAATTTCTTCCCACTTTTGTATGGTTTAATTTTTTTATCAACGAAACTGTACCACTTTTACTACTACTACTACTACTA---------CTGATTTCAAATGCCTTACTTTTATAATGGTTTTTTTAGCTTTTATTATTATTATTATTACTATTAGNAATACTCTTGTCAACTAGTTTTTAGCCAGTATGTACGTGAAGATCTGGATTTGATCGACCTGTTTTGAAATTGTGCCTATTCCTTCTTTTTATAATAATTTTTTTGTATTACTATTACTACATAGTACTATTTTTATTGTCATTATTATCATTGCTAAGATGCCTACTACTAATTACTATTATTATTATTATTTTTATGGTTCGTATCTATCTTCTTTTAAAACCAACAATTTAATTGTACTGAAATGATTGCAATCCTGACAATTTTTACACTTTTGTGACGATTAATACAAATAAATGAATCTG] [+] EMBL CD082612 [CCAGGCCANAATTCGGCACGAGGTGCACCAAGGCGTAAAGATTTTATTAAACGTTTCTTACGTATTAAAGGAATACGTTCAAGAACTGGTCAGGAGATTACGCGTGCTGATTTAGACGAATTCATTGATGATTACCTTCGCCGAGATGGCGTATTTTTAGTACGTATGCTGGCCATCAACGCTGGTGATGTGATCACATCTGAAATTGTTATGGCTTTATATGAACATTACATTGATAATGTTTATTCAGTGGATAATACCCCACAGAAAAGTCTAGAGAAAGAACCATTGAAAGATGGATCAGGTATACCATCAAATTATGTGTAAAGTTATTCTTGTGTCCTCTCCTATATATGTGTATTTTTCATTCCTCAACTATTGCTCATCAGTATATAGTTACACTATAGCAGTATTACAAACAATAGTAATAGTATCTTACTATGTAAAAGCTTAGCAAGGAGGTGTACAACACAAAATTGATTTTTCTTTCTCCGAATATAACAAATCTATTTTTAATTCTTGTTATATTGTATTATGGTTGTTGTTTGCACAGTTTAGAATTTCTTCCCACTTTTGTATGGTTTAATTTTTTTATCAACGAAACTGTACCACTTTTACTACTACTACTACTACTA CTGATTTCAAATGCCTTACTTTTATAATGGTTNTTTTAGCTNNTATTATTATTATTATTACTATTAGNA ] [-] EMBL CD066873 [ AGTACGTATGCTGGCCATCAACGCTGGTGATGTGATCACATCTGAAATTGTTATGGCTTTATATGAACATTACATTGATAATGTTTATTCAGTGGATAATACCCCACAGAAAAGTCTAGAGAAAGAACCATTGAAAGATGGATCAGGTATACCATCAAATTATGTGTAGAGTTATTCTTGTGTCCTCTCCTATATATGTGTATTTTTCATTCCTCAACTATTGCTCATCAGTATATAGTTACACTATAGCAGTATTACAAACAATAGTAATAGTATCTTACTAGGTAAAAGCTTAGCAAGGAGGTGTACAACACAAAATTGATTTTTCTTTCTCCGAATATAACAAATCTATTTTTAATTCTTGTTATATTGTATTATGGTTGTTGTTTGCACAGTTTAGAATTTCTTCCCACTTTTGTATGGTTTAATTTTTTTATCAACGAAACTGTACCACTTTTACTAC ] [-] EMBL CD140587 [ CATTGAAAGATGGATCAGGTATACCATCAAATAATGTGTAAACTTATTCTTGTGTCCTCTCCTATATATGTGTATTTTTCATTCTTCAACTATTGCTCATCAGTATATAGTTACACTATAGCAGTATTACAAACAATAGTAATAGTATCTTACTAGGTAAAAGCTTAGCAAGGAGGTGTACAACACAAAATTGATTATTCTTTCTCCGAATATAACAAATCTATTTTTAATTCTTGTTATATTGTATTATGGTTGTTGTTTGCACAGTCTAGAATTTCTTCCCACTTTTGTATGGTGTAATTATTTTATCAACGAAACTGTACCACTTTTACTACTACTACTACTACTACTACTACTGCTGATTTCAAATGCCTTACTTTTATAATGGTTTTTTTAGCTTTTATTATTATTATTATTACTA ] [+] EMBL SMAA69088 [ TGTGTCCTCTCCTATATATGTGTATTTTTCATTCCTCAACTATTGCTCATCAGTATATAGTTACACTATAGCAGTATTACAAACAATAGTAATAG ATCTTACTAGGTAAAAGCTTAGCAAGGAGGTGTACAACACAAAATTGAT ] [-] EMBL CD076206 [ CTTAGCAAGGAGGTGTACAACACAAAATTGATTTTTCTTTCTCCGAATATAACAAATCTATTTTTAATTCTTGTTATATTGTATTATGGTTGTTGTTTGCACAGTTTAGAATTTCTTCCCACTTTTGTATGGTTTAATTTTTTTATCAACGAAACTGTACCACTTTTACTACTACTACTACTACTA CTGATTTCAAATCCCTTACTTTTATAATGGTTTTTTTAGCTTTTATTATTATTATTATTACTATTAGTAATACTCTTGTCAACTAGTTTTTAGCCAGTATGTACGTGAAGATCTGGATTTGATCGACCTGTTTTGAAATTGTGCCTATTCCTTCTTTTTATAATAATTTTTTTGTATTACTATTACTACATAGTACTATTTTTATTGTCATTATTATCATTGCTAAGATGCCTACTACTAATTACTATTATTATTATTATTTTTATGGTTCGTATCTATCTTCTTTTAAAACCAACAATTTAATTGTACTGAAATGATTGCAATCCTGACAATTTTTACACTTTTGTGACGATTAATACAAATAAATGAATCTG] [+] EMBL SM734 [ TATTGTATTATGGTGGTNGTTTGCACAGNTTAGAATTTCTTCCCACTTTGGTATGGTTTAATTTTTTTATCAACGAAACTGTACCACTTTTACTACTACTACTACTACTA CTGATTTCAAATGCCTTACTTTTATAATGGTTTNNTTAGCTTTNATTATTATTATNATTACTATTAGGAATACTCTGGTCAACTAGTTTTNAGACAGNATGTACGTGAAGATCTGGATTg ] consensusID : consensus_11021#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 629 fasta sequence [TGAGGATTTTTCCGATCGTCTTAACTTATTTACAGTTGTTTTATTCCTCTTATCATGTTTAATTGTGTCAACAAAACAATATTTTATGAGTTCGATCTCATGTTATATTCCGGTAAAGCCTACGGGCGATAATTTTAATGCTTATCTTACTGATTATTGTTGGGTACATGGTACAATTCCTCTGAGGCCAGATGAAAAATTACCGGTTACTCGTGAAGAATGGGATGAGTATGATCGCGTAAGACGTATAACCTATTATCAGTGGGTCCCATTTGTTCTCGGGCTGCAATGTATATTTTTCTACATTCCACATATTGCATGGCAGGCTGTATGCGCCCATAGATCCGGTGGAGATTTGTTCGCTCTTGTGAAAGCCGCTGCTGATGCCGCAATTTCTGAACGTGGTTCCCGTAAGAGTCAAGTTAAACGTGTGGCTGAATTTTTGGAAGATATGATTGATGGTCATAAGGATTGTCGACATGGTCGTCGGATGAATTTAACTAGACGTGCATATGACATGTGTGGTATATGTGTTGTTAGTAAACGACTTGGAACATGCCTTGTATTCTCATATTTATGTGTTAAAATCATAACAATTATCAATGCAATTATGCAAGTATATTTGATTC] [-] EMBL CD061706 [TGAGGATTTTTCCGATCGTCTTAACTTATTTACAGTTGTTTTATTCCTCTTATCATGTTTAATTGTGTCAACAAAACAATATTTTATGAGTTCGATCTCATGTTATATTCCGGTAAAGCCTACGGGCGATAATTTTAATGCTTATCTTACTGATTATTGTTGGGTACATGGTACAATTCCTCTGAGGCCAGATGAAAAATTACCGGTTACTCGTGAAGAATGGGATGAGTATGATCGCGTAAGACGTATAACCTATTATCAGTGGGTCCCATTTGTTCTCGGGCTGCAATGTATATTTTTCTACATTCCACATATTGCATGGCAGGCTGTATGCGCCCATAGATCCGGTGGAGATTTGTTCGCTCTTGTGAAAGCCGCTGCTGATGCCGCAATTTC ] [+] EMBL CD158520 [ GATTTTTCCGATCGTCTTAACTTATTTACAGTTGTTTTATTCCTCTTATCATGTTTAATTGTGTCAACAAAACAATATTTTATGAGTTCGATCTCATGTTATATTCCGGTAAAGCCTACGGGCGATAATTTTAATGCTTATCTTACTGATTATTGTTGGGTACATGGTACAATTCCTCTGAGGCCAGATGAAAAATTACCGGTTACTCGTGAAGAATGGGATGAGTATGATCGCGTAAGACGTATAACCTATTATCAGTGGGTCCCATTTGTTCTCGGGCTGCAATGTATATTTTTCTACATTCCACATATTGCATGGCAGGCTGTATGCGCCCATAGATCCGGTGGAGATTTGTTCG ] [+] EMBL CD147642 [ TTACCGGTTACTCGTGAAGAATGGGATGAGTATGATCGCGTAAGACGTATAACCTATTATCAGTGGGTCCCATTTGTTCTCGGGCTGCAATGTATATTTTTCTACATTCCACATATTGCATGGCAGGCTGTATGCGCCCATAGATCCGGTGGAGATTTGTTCGCTCTTGTGAAAGCCGCTGCTGATGCCGCAATTTCTGAACGTGGTTCCCGTAAGAGTCAAGTTAAACGTGTGGCTGAATTTTTGGAAGATATGATTGATGGTCATAAGGATTGTCGACATGGTCGTCGGATGAATTTAACTAGACGTGCATATGACATGTGTGGTATATGTGTTGTTAGTAAACGACTTGGAACATGCCTTGTATTCTCATATTTATGTGTTAAAATCATAACAATTATCAATGCAATTATGCAAGTATATTTGATTC] consensusID : consensus_11021#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence [GTTATGAATCTGTTTCACCATCAGGGACAGGGTTTGATACATTTCTAGTTAATTACTGTTGGGTTCATGGAACTATTCCATTGAGAAATAATGAACCTTTGCCAGAAACAGATGCTCAATGGAAAGAATATGATATACATAGAAGGATCACCTATTATCAGTGGGTCCCATTTGTTCTCGGGCTGCAATGTATATTTTTCTACATTCCACATATTGCATGGCAGGCTGTATGCGCCCATAGATCCGGTGGAGATTTGTTCGCTCTTGTGAAAGCCGCTGCTGATGCTGCAATTTCTGAACGTGGTTCCCGTAAGAGTCAAGTTAAACGTGTGGCTGAATTTTTGGAAGATATGATTGATGGTCATAAGGATTGTCGACATGGTCGTCGGATGAATTTAACTAGACGTGCATATGACATGTGTGGTATATGTGTTGTTAGTAAACGACT] [-] EMBL CD178204 [GTTATGAATCTGTTTCACCATCAGGGACAGGGTTTGATACATTTCTAGTTAATTACTGTTGGGTTCATGGAACTATTCCATTGAGAAATAATGAACCTTTGCCAGAAACAGATGCTCAATGGAAAGAATATGATATACATAGAAGGATCACCTATTATCAGTGGGTCCCATTTGTTCTCGGGCTGCAATGTATATTTTTCTACATTCCACATATTGCATGGCAGGCTGTATGCGCCCATAGATCCGGTGGAGATTTGTTCGCTCTTGTGAAAGCCGCTGCTGATGCTGCAATTTCTGAACGTGGTTCCCGTAAGAGTCAAGTTAAACGTGTGGCTGAATTTTTGGAAGATATGATTGATGGTCATAAGGATTGTCGACATGGTCGTCGGATGAATTTAACTAGACGTGCATATGACATGTGTGGTATATGTGTTGTTAGTAAACGACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11021#2 ------------------------------------------------------------ consensus_11021#3 ------------------------------------------------------------ consensus_11021#0 TAGTGGTAGTAATAGTAGACATTGTCATTTCATTTAGTTGTAAGCATTGTGTTGTCTGTT 60 consensus_11021#1 ---CCAGGCCANAATTCGGCACGA--GGTGCACCAAGGCGTAAAGATTTTATTAAACGTT 55 consensus_11021#2 ------------------------------------------------------------ consensus_11021#3 ------------------------------------------------------------ consensus_11021#0 TGT-GTGAGGGCAGGCAACAATTATTATCATTATTACCGTTGTAATTATTTTATGAAAAG 119 consensus_11021#1 TCTTACGTATTAAAGGAATACGTTCAAGAACTGGTCAGGAGATTACGCGTGCTGATTTAG 115 consensus_11021#2 ------------------------------------------------------------ consensus_11021#3 ------------------------------------------------------------ consensus_11021#0 CTAAATACAACAATTAATCCTACTGTTACTACCGAAAAACTATGGTGGCTAAAGATTTCA 179 consensus_11021#1 ACGAATTCATTGATGATTACCTTCGCCGAGATGGCGTATTTTTAGTACGTATGCTGGCCA 175 consensus_11021#2 -------------------------------------------TGAGGATTTTTCCGATC 17 consensus_11021#3 ------------------------------------------------------------ consensus_11021#0 TTGAACTTTTCGCAAAATTCAACTATGCTAATCGTGTTGCAGTTGAAGATTTCTCAGATC 239 consensus_11021#1 TCAACGCTGGTGATGTGATCACATCTGA-AATTGTTATGGCTTTATATGAACATTACATT 234 consensus_11021#2 GTCTTAACTTATTTACAGTTGTTTTATTCCTCTTATCATGTTTAATTGTGTCAACAAAAC 77 consensus_11021#3 ------------------------------------------------------------ consensus_11021#0 GATTGAGCTTATTTACGGTAGTTTTATTCTTGATCGCTTGTATAATTGTATCGGCCAAAC 299 consensus_11021#1 GATAATGTTTATTCAGTGGATAATACCCCACAGAAAAGTCTAGAGAAAGAACCATTGAAA 294 consensus_11021#2 AATATTTTATGAGTTCGATC---TCATGT-TA----TATTCCGGTAAAGCCTACGGGCGA 129 consensus_11021#3 ---------------------------GT-TA----TGAATCTGTTTCACCATCAGGGAC 28 consensus_11021#0 AATATTTTCTAAATTCAATC---TCATGT-TA----TATTCCTGTTAAACCGACTGGTGA 351 consensus_11021#1 GATGGATCAGGTATACCATCAAATTATGTGTAAAGTTATTCTTGTGTCCTCTCCTATATA 354 ** ** * ** * * consensus_11021#2 TAATTTTAATGCTTATCTTACTGATTATTGTTGGGTACATGGTACAATTCCTCTGAGGCC 189 consensus_11021#3 AGGGTTTGATACATTTCTAGTTAATTACTGTTGGGTTCATGGAACTATTCCATTGAGAAA 88 consensus_11021#0 AAATTATAATTCATATTTAACTGATTACTGTTGGGTTCATGGAACTATTCCATTGAGACC 411 consensus_11021#1 TGTGTATTTTTCATTCCTCAACTATTGCTCATCAGTATATAGTTACACTATAGCAGTATT 414 * * * * * * *** * * ** ** * * * consensus_11021#2 AGATGAAAAATTACCGGTTACTCGTGAAGAATGGGATGAGTATGATCGCGTAAGACGTAT 249 consensus_11021#3 TAATGAACCTTTGCCAGAAACAGATGCTCAATGGAAAGAATATGATATACATAGAAGGAT 148 consensus_11021#0 TGATGAACCGATGCCAAGCACACCGAAAGAATGGGAACAATATGATCAATTAAGGCGTAT 471 consensus_11021#1 ACAAACAATAGTAATAGTATCTTACTAGGTAAAAGCTTAGCAAGGAGGTGTACAACACAA 474 * * * * * * * * * consensus_11021#2 AACCTATTATCAGTGGGTCCCATTTGTTC--TCGGGCTGCAATGTATATTTTTCTACATT 307 consensus_11021#3 CACCTATTATCAGTGGGTCCCATTTGTTC--TCGGGCTGCAATGTATATTTTTCTACATT 206 consensus_11021#0 AACCTATTATCAGTGGGTCCCATTTGTTC--TCGGGCTGCAATGTATATTTTTCTACATT 529 consensus_11021#1 AATTGATTTTTCTTTCTCCGAATATAACAAATCTATTTTTAATTCTTGTTATATTGTATT 534 * *** * * * ** * ** * *** * ** * * *** consensus_11021#2 CCACATATTGCATG-GCAGGCTGTATGCGCCCATAGATCCGGTGGAGATTTGTTCGCTCT 366 consensus_11021#3 CCACATATTGCATG-GCAGGCTGTATGCGCCCATAGATCCGGTGGAGATTTGTTCGCTCT 265 consensus_11021#0 CCACATATTGCATG-GCAGGCTGTATGCGCCCATAGATCCGGTGGAGATTTGTTCGCTCT 588 consensus_11021#1 ATGGTTGTTGTTTGCACAGTTTAGAATTTCTTCCCACTTTTGTATGGTTTAATTTTTTTA 594 * *** ** *** * * * * ** * ** ** * consensus_11021#2 TGTGAAAGCCGCTGCTGATGCCGCAATTTCTGAACGTGGTTCCCGTAAGAGTCAAGTTAA 426 consensus_11021#3 TGTGAAAGCCGCTGCTGATGCTGCAATTTCTGAACGTGGTTCCCGTAAGAGTCAAGTTAA 325 consensus_11021#0 TGTGAAAGCCGCTGCTGATGCCGCAATTTCTGAACGTGGTTCCCGTAAGAGTCAAGTTAA 648 consensus_11021#1 TCAACGAAACTGTACCACTTTTACTACTACTACTACTACTACTGATTTCAAATGCCTTAC 654 * * * * * * * * * ** * * * * * *** consensus_11021#2 ACGTGTGGCTGAATTTTTGGAAGATATGATTGATGGTCATAAGGATTGTCGACATGGTCG 486 consensus_11021#3 ACGTGTGGCTGAATTTTTGGAAGATATGATTGATGGTCATAAGGATTGTCGACATGGTCG 385 consensus_11021#0 ACGTGTGGCTGAATTTTTGGAAGATATGATTGATGGTCATAAGGATTGTCGACATGGTCG 708 consensus_11021#1 TTTTATAATGGTTTTTTTAGCTTTTATTATT-ATTATTATTACTATTAGNAATACTCTTG 713 * * * ***** * *** *** ** * ** * *** * * * * consensus_11021#2 TCGGATGAATTT-AACTAG-ACGTGCAT-ATGACATGTGTGGTATATGTGTTGTTAGTAA 543 consensus_11021#3 TCGGATGAATTT-AACTAG-ACGTGCAT-ATGACATGTGTGGTATATGTGTTGTTAGTAA 442 consensus_11021#0 TCGGATGAATTT-AACTAG-ACGTGCAT-ATGACATGTGTGGTATATGTGTTGTTAGTAA 765 consensus_11021#1 TCAACTAGTTTTTAGCCAGTATGTACGTGAAGATCTGGATTTGATCGACCTGTTTTGAAA 773 ** * *** * * ** * ** * * * ** ** * ** * ** * ** consensus_11021#2 ACGACTTGGAACATGCCTTGTATTCTCATATTTATGTGTTAAAATCATAACA-ATTATCA 602 consensus_11021#3 ACGACT------------------------------------------------------ 448 consensus_11021#0 ACGACTTGGAACATGCCTTGTATTCTCATATTTATGTGTTAAAATCATAACA-ATTATCA 824 consensus_11021#1 TTGTGCCTATTCCTTCTTTTTATAATAATTTTTTTGTATTACTATTACTACATAGTACTA 833 * consensus_11021#2 ATGCAATTAT-GCAAGTATATTTGATTC-------------------------------- 629 consensus_11021#3 ------------------------------------------------------------ consensus_11021#0 ATGCAATTAT-GCAAGTATATTTGATTCAACGTTTTCTTGGTTTCTATGCTGATGGAAGT 883 consensus_11021#1 TTTTTATTGTCATTATTATCATTGCTAAGATGCCTACTACTAATTACTATTATTATTATT 893 consensus_11021#2 ------------------------------------------------------------ consensus_11021#3 ------------------------------------------------------------ consensus_11021#0 GCCGGACAGAAAAGTATGCAATTAGGGAAACCATACGAAACTAACTCGGCAGTTACAGCG 943 consensus_11021#1 ATTTTTATGGTTCGTATCTATCTTCTTTTAAAACCAACAATTTAATTG-TACTGAAATGA 952 consensus_11021#2 ------------------------------------------------------------ consensus_11021#3 ------------------------------------------------------------ consensus_11021#0 ATGTCGAATCAAGAAAATGAAGATTTAGAAGGTTTCGGATTCGGATTAACTGTTGCCAAC 1003 consensus_11021#1 TTGCAATCCTGACAATTTTTACACTTTTGTGACGATTAATACAAATAAATGAATCTG--- 1009 consensus_11021#2 ------------------------------------------------------------ consensus_11021#3 ------------------------------------------------------------ consensus_11021#0 CATATACGTGCTGGACGCGATTGGCCAGAGACAATTCTATTCCCACGTGTAGCTTATTGT 1063 consensus_11021#1 ------------------------------------------------------------ consensus_11021#2 ------------------------------------------------------------ consensus_11021#3 ------------------------------------------------------------ consensus_11021#0 CGTGTCCCAGGTATTCGCTTAGTAGGTGCTGAAAATGCTTATACTGCACAATGTGCATTA 1123 consensus_11021#1 ------------------------------------------------------------ consensus_11021#2 ------------------------------------------------------------ consensus_11021#3 ------------------------------------------------------------ consensus_11021#0 CCTATAAATATGTTAAACGAGAAAATTATATATTTTTCTGGTTTTGGATCTGTTTCCTCA 1183 consensus_11021#1 ------------------------------------------------------------ consensus_11021#2 ------------------------------------------------------------ consensus_11021#3 ------------------------------------------------------------ consensus_11021#0 TAGCTGCCAGTATATTTAGTTTACTACTATGGTTAGTAAGAATGGTTATTGCACCAAGGC 1243 consensus_11021#1 ------------------------------------------------------------ consensus_11021#2 ------------------------------------------------------------ consensus_11021#3 ------------------------------------------------------------ consensus_11021#0 GTAAAGATTTTATTAAACGTTTCTTACGTATTAAAGGAATACGTTCAAGAACTGGTCAGG 1303 consensus_11021#1 ------------------------------------------------------------ consensus_11021#2 ------------------------------------------------------------ consensus_11021#3 ------------------------------------------------------------ consensus_11021#0 AGATTACGCGTGCTGATTTAGACGAATTCATTGATGATTACCTTCGCCGAGATGGCGTAT 1363 consensus_11021#1 ------------------------------------------------------------ consensus_11021#2 ---------------------------------------- consensus_11021#3 ---------------------------------------- consensus_11021#0 TTTTAGTACGTATGCTGGCCATCAACGCTGGTGATGTGAT 1403 consensus_11021#1 ---------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||