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Schistosoma mansoni
cluster # 11028 cluster # 11028       Sequences # 29       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11028#0 length = 1535 sequences # 28  
consensus_11028#1 length = 193 sequences # 1  

consensusID : consensus_11028#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 28
consensus length = 1535
fasta sequence
                              [TGATTGGCCCAGCCTGACCTTGGGGATTTTTTGACCTTTGAAGATGAAGGTCGTTCTCCATAACGTTCTCTCCTGATGGGAAGTTTAGAGGAGTCCAGATTGCCACTGGAGATCAAAACGAAACTAGCAGAGCTTGAAATTGAACTTTCGGAAGGTGATATAACAGAAAAAGGATACCAGAAAAAGAAACAGAAGCTTCTAGCTCCGTTTATTAACGCTCCGATTAACTCAACTAATTCATCTAATAACTCACATATTCCTTATGGTGGAGTTTTACTTCCTGGACTTAATGAAACGCATCATTTAGGCCCACGCGGCCAGGCTGTTGGTTGTGGTGATAATGTTACAGAGTCTTTCAGAAACGAGCCCCAAAA-TAATTCTCCTATTAATGCTCAAAATCGCAGATACATTCGTGAAAATCATCGATATCGATCGGATATC-CGAGAAGAGGCAGTGAAGGAGGCTTTAGTAC-AAGCTCGGCAGGAACGTCATGATGCTTTGGCACCTAGTAAACGTCGTGACCCCAGTCGTTTGTCCTGTATACATCAAACTCCTGAACACGATGCAGCATATTCTGATGATTCGGATGAAGATATGTCATCAACATCTGCACACATTACGCGTTTAGGGAACAATTTTAACCAGTCATCGGGATTAAGTGAAATCCCAAGTTCAAGTGTACCGACAAATGGCGTTTCCGACAGAAATCAACTTAGAACATCAACTACTATTACTGGTCAGATACACAAAC-AACAATCCCCTGCTAATCGATATGATGAAGTGCCTTCTTTAGATGAAATTCGATCCTCTCAACCACCGATTCGATCATCAAATAGAATAAATCAATCAGATGTAAATAATCCATGGACTTACACAAACCAGCCTTCTAATCAACAAAATGGTAATTTAGATGGAGCATTGAATACGGCTGATTCGTTTGAACAGTTAGCTGCTCTTGCTGAAGCTCAGTTAAATTCTAATAATATAGGGATGTACGATTATCCTGATCCATCAGTTAATACTAATTTTCATCAATCTCGAGCGATTTCTACAGCTTATCAACCCCAGTCTGGAATCAATTCGTGTCCAATATCCATGACTCAGAACGGTCAGCGATCTCATATATTTGGCAGTGTTAGTGTGCTCCCTAG--TTGCCAGTGGTGTTATATCAAATGGTAATTCAGGACATGCAAGTCATGAATTCGTTCCTTCATCATCAGCGTATGACTTACAACAAGGTCAACAAGAACAGTATTCTCAGTCGAACCAGCCGGTCTCACTAGCGTCTTCTTCATCTGCTGATCTTGATAATAGTAATGATAGGAAGTTCTCAGCACCAGCAACAGGAGAGTCTATTGGACAAGATCCTTCCTCAGATACCAGTCAAACAACAGGCCTGGTATGTCATAATCGTGTATCAGAAAAAATTCAAAAATTAGTCAACATTTTGAAACGTCCCAAACGATATCCATTACCCGAATATTTTCTTGATGATGAAGATCAAGTACTTGTAAGACCTGTTGTTGATCCTACGG]

[+] EMBL CD097474             [TGATTGGCCCAGCCTGACCTTGGGGATTTTTTGACCTTTGAAGATGAAGGTCGTTCTCCATAACGTTCTCTCCTGATGGGAAGTTTAGAGGAGTCCAGATTGCCACTGGAGATCAAAACGAAACTAGCAGATCTTGAATTTGAACTTTCGGAAGGTGATATAACAGAAAAAGGATACCAGAAAAAGAAACAGAAGCTTCTAGCTCCGTTTATTAACGCTCCGATTAACTCAACTAATTCATCTAATAACTCACATATTCCTTATGGTGGAGTTTTACTTCCTGGACTTAATGAAACGCATTATTTAGGCCCACGCGGCCAGGCTGTTGGTTGGGGTGATAATGCTACAGAGTCTTTCAGAAACGAGCCCCAAAA TAATTCTGCTATTAATGCTCAAAATCGCATATACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD067028             [                            TTTTGACCTTTGAAGATGAAGGTCGTTCTCCATAACGTTCTCTCCTGATGGGAAGTTTAGAGGAGTCCAGATTGCCACTGGAGATCAAAACGAAACTAGCAGAGCTTGAAATTGAACTTTCGGAAGGTGATATAACAGAAAGAGGATACCAGAAAAAGAAACAGAAGCTTCTAGCTCCGTTTATTAACGCTCCGATTAACTCAACTAATTCATCTAATAACTCACATATTCCTTATGGTGGAGTTTTACTTCCTGGACTTAATGAAACGCATCATTTAGGCCCACGCGGCCAGGCTGTTGGTTGTGGTGATAATGTTACAGAGTCTTTCAGAAACGAGCCCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD183366             [                            TTTTGACCTTTGAAGATGAAGGTCGTTCTCCATAACGTTCTCTCCTGATGGGAAGTTTAGAGGAGTCCAGATTGCCACTGGAGATCAAAACGAAACTAGCAGAGCTTGAAATTGAACTTTCGGAAGGTGATATAACAGAAAAAGGATACCAGAAAAAGAAACAGAAGCTTCTAGCTCCGTTTATTAACGCTCCGATTAACTCAACTAATTCATCTAATAACTCACATATTCCTTATGGTGGAGTTTTACTTCCTGGACTTAATGAAACGCATCATTTAGGCCCACGCGGCCAGGCTGTTGGTTGTGGTGATAATGTTACAGAGTCTTTCAGAAACGAGCCCCAAAA TAATTCTCCTATTAATGCTCAAAATCGCAGATACATTCGTGAAAATCATCGATATCGATCGGATATC CGAGAAGAGGCAGTGAAGGAGGCTTTAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD097473             [                                GACCTTTGAAGATGAAGGTCGTTCTCCATAACGTTCTCTCCTGATGGGAAGTTTAGAGGAGTCCAGATTGCCACTGGAGATCAAAACGAAACTAGCAGAGCTTGAAATTGAACTTTCGGAAGGTGATATAACAGAAAAAGGATACCAGAAAAAGAAACAGAAGCTTCTAGCTCCGTTTATTAACGCTCCGATTAACTCAACTAATTCATCTAATAACTCACATATTCCTTATGGTGGAGTTTTACTTCCTGGACTTAATGAAACGCATCATTTAGGCCCACGCGGCCAGGCTGTTGGTTGTGGTGATAATGTTACAGAGTCTTTCAGAAACGAGCCCCAAAA TAATTCTCCTATTAATGCTCAAAATCGCAGATACATTCGTGAAAATCATCGATATCGATCGGATATC CGAGAAGAGGCAGTGAAGGAGGCTTTAGTAC AAGCTCGGCAGGAACGTCATGATGCTTTGGCACCTAGTAAACGTCGTGACCCCAGTCGTTTGTCCTGTATACATCAAACTCCTGAACACGATGCAGCATATTCTGATGATTCGGATGAAGATATGTCATCAACATCTGCACACATTACGCGTTTAGGGAACAATTTTTACCAGTCATCGGGATTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD188699             [                                          GATGAAGGTCGTTCTCCATAACGTTCTCTCCTGATGGGAAGTTTAGAGGAGTCCAGATTGCCACTGGAGATCAAAACGAAACTAGCAGAGCTTGAAATTGAACTTTCGGAAGGTGATATAACAGAAAAAGGACACCAGAAAAAGAAACAGAAGCTTCTAGCTCCGTTTATTAACGCTCCGATTAACTCAACTAATTCATCTAATAACTCACATATTCCTTATGGTGGAGTTTTACTTCCTGGACTTAATGAAACGCATCATTTAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD170674             [                                                 GTCGTTCTCCAGAACGTTCTCTCCTGATGGGAAGTTTAGAGGAGTCCAGATTGCCACTGGAGATCAAAACGAAACTAGCAGAGCTTGAAATTGAACTTTCGGAAGGTGATATAACAGAAAAAGGATACCAGAAAAAGAAACAGAAGCTTCTAGCTCCGTTTATTAACGCTCCGATTAACTCAACTAATTCATCTAATAACTCACATATTCCTTATGGTGGAGTTTTACTTCCTGGACTTAATGAAACGCATCATTTAGGCCCACGCGGCCAGGCTGTTGGTTGTGGTGATAATGTTACAGAGTCTTTCAGAAACGAGCCCCAAAA TAATTCTCCTATTAATGCTCAAAATCGCAGATACATTCGTGAAAATCATCGATATCGATCGGATATC CGAGAAGAGGCAGTGAAGGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD110924             [                                                              ACGTTCTCTCCTGATGGGAAGTTCAGAGGAGTCCAGATCGCCACTGGAGATCAAAACGAAACTAGCAGAGCTTGAAATTGAACTTTCGGAAGGTGATATAACAGAAAAAGGATACCAGAAAAAGAAACAGAAGCTTCTAGCTCCGTTTATTAACGCTCCGATTAACTCAACTAATTCATCTAATAACTCACATATTCCTTATGGTGGAGTTTTACTTCCTGGACTTAATGAGACGCATCATTTAGGCCCACGCGGCCAGGCTGTTGGTTGTGGTGATAATGTCACAGAGTCTTTCAGACACGAGCCCCAAAAGTAATTCTCCTATTAATGCTCAAAATCGCAGATACATTCGTGAAAATCATCGATATCGATCGGATATCTCGAGAAGAGGCAGTGAAGGAGGCTTTAGTAC AAGATCGGCAGGAACGTCATGATcgc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD067235             [                                                                                                                       GAAACTAGCAGAGCTTGAAATTGAACTTTCGGAAGGTGATATAACAGAAAAAGGATACCAGAAAAAGAAACAGAAGCTTCTAGCTCCGTTTATTAACGCTCCGATTAACTCAACTAATTCATCTAATAACTCACATATTCCTTATGGTGGAGTTTTACTTCCTGGACTTAATGAAACGCATCATTTAGGCCCACGCGGCCAGGCTGTTGGTTGTGGTGATAATGTTACAGAGTCTTTCAGAAACGAGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD169692             [                                                                                                                                              AACTTTCGGAAGGTGATATAACAGAAAAAGGATACCAGAAAAAGAAACAGAAGCTTCTAGCTCCGTTTATTAACGCTCCGATTAACTCAACTAATTCATCTAATAACTCACATATTCCTTATGGTGGAGTTTTACTTCCTGGACTTAATGAAACGCATCATTTAGGCCCACGCGGCCAGGCTGTTGGTTGTGGTGATAATGTTACAGAGTCTTTCAGAAACGAGCCCCAAAA TAATTCTCCTATTAATGCTCAAAATCGCAGATACATTCGTGAAAATCATCGATATCGATCGGACATC CGAGAAGAGGCAGTGAAGGAGGCTTTAGTAC AAGCTCGGCAGGAACGTCATGATGCTTTGGCACCTAGTAAACGTCGTGACCCCAGTCGTTTGTCCTGTATACATCAAACTCCTGAACACGATGCAGCATATTCTGATGATTCGGATGAAGATATGTCATCAACATCTGCACACATTACGCGTTTAGGGAACAATTTTAACCAGTCATCGGGATTAAGTGAAATCCCAAGTTCAAGTGTACCGACAAATGGCGTTTCCGACAGAAATCAACTTAGACCATCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD128160             [                                                                                                                                                                      AAAAAGGATACCAGAAAAAGAAACAGAAGCTTCTAGCTCCGTTTATTAACGCTCCGATTAACTCAACTAATTCATCTAATAACTCACATATTCCTTATGGTGGAGTTTTACTTCCTGGACTTAATGAAACGCATCATTTAGGCCCACGCGGCCAGGCTGTTGGTTGTGGTGATAATGTTACAGAGTCTTTCAGAAACGAGCCCCAAAA TAATTCTCCTATTAATGCTCAAAATCGCAGATACATTCGTGAAAATCATCGATATCGATCGGATATC CGAGAAGAGGCAGTGAAGGAGGCTTTAGTAC AAGCTCGGCAGGAACGTCATGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD066379             [                                                                                                                                                                              TACCAAAAAAATAATCAAAGGCTTCTAGCTCCGTTTATTAACGCTCCGATTAACTCAACTAATTCATCTAATAACTCACATATTCCTTATGGTGGAGTTTTACTTCCTGCACTCAATGAAACGCATCATTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD066553             [                                                                                                                                                                                                                                   CTAAAATAATTCATCTAATAACTCACATATTCCTTATGGTGGAGTTTTACTTCCTGGACTTAATGAAACGCATCATTTAGGCCCACGCGGCCAGGCTGTTGGTTGTGGTGATAATGTTACAGAGTCTTTCAGAAACGAGCCCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD160286             [                                                                                                                                                                                                                                                                                                                                                                                                                                AAAATCATCGATATCGATCGGATATC CGAGAAGAGTCAGTGAAGGAGGCTTTAGTAC AAGCTCGGCAGGAACGTCATGATGCTTTGGCACCTAGTAAACGTCGTGACCCCAGTCGTTTGTCCTGTATACATCAAACTCCTGAACACGATGCAGCATATTCTGATGATTCGGATGAAGATATGTCATCAACATCTGCACACATTACGCGTTTAGGGAACAATTTTAACCAGTCATCGGGATTAAGTGAAATCCCAAGTTCAAGTGTACCGACAAATGGCGTTTCCGACAGAAATCAACTTAGAACATCAACTACTATTACTGGTCAGATACACAAAC AACAATCCCCTGCTAATCGATATGATGAAGTGCCTTCTTTAGATGAAATTCGATCCTCTCAACCACCGATTCGATCATCAAATAGAATAAATCAATCAGATGTAAATAATCCATGGACTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD119986             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AGTGAAGGAGGCTTTAGTAC AAGCTCGGCAGGAACGTCATGATGCTTTGGCACCTAGTAAACGTCGTGACCCCAGTCGTTTGTCCTGTATACATCAAACTCCTGAACACGATGCAGCATATTCTGATGATTCGGATGAAGATGTGTCATCAACATCTGCACACATTACGCGTTTAGGGAACAATTTTAACCAGTCATCGGGATTAAGTGAAATCCCAAGTTCAAGTGTACCGACAAATGGCGTTTCCGACAGAAATCAACTTAGAACATCAACTACTATTACTGGTCAGATACACAAAC AACAATCCCCTGCTAATCGATATGATGAAGTGCCTTCTTTAGATGAAATTCGATCCTCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD120125             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTGAAGGAGGCTTTAGTAC AAGCTCGGCAGGAACGTCATGATGCTTTGGCACCTAGTAAACGTCGTGACCCCAGTCGTTTGTCCTGTATACATCAAACTCCTGAACACGATGCAGCATATTCTGATGATTCGGATGAAGATATGTCATCAACATCTGCACACATTACGCGTTTAGGGAACAATTTTAACCAGTCATCGGGATTAAGTGAAATCCCAAGTTCAAGTGTACCGACAAATGGCGTTTCCGACAGAAATCAACTTAGAACATCAACTACTATTACTGGTCAGATACACAAACAAACAAT CCCTGCTAATCGATATGATGAAGTGCCTTCTCTAGATGAAATTCGATCCTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD160125             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AGGAGGCTTTAGTAC AAGCTCGGCAGGAACGTCATGATGCTTTGGCACCTAGTAAACGTCGTGACCCCAGTCGTTTGTCCTGTATACATCAAACTCCTGAACACGATGCAGCATATTCTGATGATTCGGATGAAGATATGTCATCAACATCTGCACACATTACGCGTTTAGGGAACAATTTTAACCAGTCATCGGGATTAAGTGAAATCCCAAGTTCAAGTGTACCGACAAATGGCGTTTCCGACAGAAATCAACTTAGAACATCAACTACTATTACTGGTCAGATACACAAAC AACAATCCCCTGCTAATCGATATGATGAAGTGCCTTCTTTAGATGAAATTCGATCCTCTCAACCACCGATTCGATCATCAAATAGAATAAATCAATCAGATGTAAATAATCCATGGACTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD141166             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GGC TTAGTACAAAGCTCGGCAGGAACGTCATGATGCTNT GCACCTAGTAAACGTCGTGACNCCAGTCGTTTGTCCTGTATACATCAAACTCCTGAACACGATGCAGCATATTCTGATGATTCGGATGAAGATATGTCATCAACATCTGCACACATTACGCGTTTAGGGAACAATTTTAACCAGTCATCGGGATTAAGTGAAATCCCAAGTTCAAGTGTACCGACAAATGGCGTTTCCGACAGAAATCAACTTAGAACATCAACTACTATTACTGGTCAGATACACAAAC AACAATCCCCTGCTAATCGATATGATGAAGTGCCTTCTTTAGATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD066517             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GATGCTNTGGCACCTAGTAAACGTCGTGACCCCAGTCGTTTGTCCTGTATACATCAAACTCCTGAACACGATGCAGCATATTCTGATGATTCGGATGAAGATATGTCATCAACATCTGCACACATTACGCGTTTAGGGAACAATTTTAACCAGTCATCGGGATTAAGTGAAATCCCAAGTTCAAGTGTACCGACAAATGGCGTTTCCGACAGAAATCAACTTAGAACATCAACTACTATTACTGGTCAGATACACAAAC AACAATCCCCTGCTAATCGATATGATGAAGTGCCTTCTTTAGATGAAATTCGATCCTCTCAACCACCGATTCGATCATCAAATAGAATAAATCAATCAGATGTAAATAATCCATGGACTTACACAAACCAGCCTTCTAATCAACAAAATGGTAATTTAGATGGAGCATTGAATACGGCTGATTCGTTTGAACAGTTAGCTGCTCTTGCTGAAGCTCAGTTAAATTCTAATAATATAGGGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD160365             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TTGGCACCTAGTAAACGTCGTGACCCCAGTCGTTTGTCCTGTATACATCAAACTCCTATACACGATGCAGCATATTCTGATGATTCGGATGAAGATATGTCATCAACATCTGCACACATTACGCGTTTAGGGAACAATTTTAACCAGTCATCGGGATTAAGTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD160096             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AACACGATGCAGCATATTCTGATGATTCGGATGAAGATATGTCATCAACATCGGCACACATTACGCGTTTAGGGAACAATTTTAACCAGTCATCGGGATTAAGTGAAATCCCAAGTTCAAGTGTACCGACAAATGGCGTTTCCGACAGAAATCAACTTAGAACATCAACTACTATTACTGGTCAGATACACAAAC AACAATCCCCTGCTAATCGATATGATGAAGTGCCTTCTTTAGATGAAATTCGATCCTCTCAACCACCGATTCGATCATCAAATAGAATAAATCAATCAGATGTAAATAATCCATGGACTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD067128             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TAGGGAACAATTTTAACCAGTCATCGGGATTAAGTGAAATCCCAAGTTCAAGTGTACCGACAAATGGCGTTTCCGACAGAAATCAACTTAGAACATCAACTACTATTACTGGTCAGATACACAAAC AACAATCCCCTGCTAATCGATATGATGAAGTGCCTTCTTTAGATGAAATTCGATCCTCTCAACCACCGATTCGATCATCAAATAGAATAAATCAATCAGATGTAAATAATCCATGGACTTACACAAACCAGCCTTCTAATCAACAAAATGGTAATTTAGATGGAGCATTGAATACGGCTGATTCGTTTGAACAGTTAGCTGCTCTTGCTGAAGCTCAGTTAAATTCTAATAATATAGGGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD063656             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            aCGACAAATGGCGTTTCCGACAG AATCAACTTAGAACATCAACTACTATTACTGGTCAGATACACAAAC AACAATCCCCTGCTAATCGATATGATGAAGTGCCTTCTTTAGATGAAATTCGATCCTCTCAACCACCGATTCGATCATCAAATAGAATAAATCAATCAGATGTAAATAATCCATGGACTTACACAAACCAGCCTTCTAATCAACAAAATGGTAATTTAGATGGAGCATTGAATACGGCTGATTCGTTTGAACAGTTAGCTGCTCTTGCTGAAGCTCAGTTAAATTCTAATAATATAGGGATGTACGATTATCCTGATCCATCAGTTAATACTAATTTTCATCAATCTCGAGCGATTTCTACAGCTTATCAACCCCAGTCTGGAATCAATTCGTGTCCAATATCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD136390             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CAACTTAGAACATCAACTACTATTACTGGTCAGATACACAAAC AACAATCCCCTGCTAATCGATATGATGAAGTGCCTTCTTTAGATGAAATTCGATCCTCTCAACCACCGATTCGATCATCAAATAGAATAAATCAATCAGATGTAAATAATCCATGGACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD149465             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ATTTAGATGGAGCATTGAATACGGCTGATTCGTTTGAACAGTTAGCTGCTCTTGCTGAAGCTCAGTTAAATTCTAATAATATAGGGATGTACGATTATCCTGATCCATCAGTTAATACTAATTTTCATCAATCTCGAGCGATTTCTACAGCTTATCAACCCCAGTCTGGAATCAATTCGTGTCCAATATCCATGACTCAGAACGGTCAGCGATCTCATATATTTGGCAGTGTTAGTGTGCTCCCTAG  TTGCCAGTGGTGTTATATCAAATGGTAATTCAGGACATGCAAGTCATGAATTCGTTCCTTCATCATCAGCGTATGACTTACAACAAGGTCAACAAGAACAGTATTCTCAGTCGAACCAGCCGGTCTCACTAGCGTCTTCTTCATCTGCTGATCTTGATAATAGTAATG                                                                                                                                                                                                                        ]
[+] EMBL CD195517             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GGCTGATTCGTTTGAACAGTTAGCTGCTCTTGCTGAAGCTCAGTTAAATTCTAATAATATAGGGATGCACGATTATCCTGATCCATCAGTTAATACTAATTTTCATCAATCTCGAGCGATTTCTACAGCTTATCAACCCCAGTCTGGAATCAATTCGTGTCCAATATCCATGACTCAGAACGGTCAGCGATCTCATATATTTGGCAGTGTTAGTGTGCTCCCTAGTTTTGCCAGTGGTGTTATATCAAATGGTAATTCAGGACATGCAAGTCATGAATTCGTTCCTTCATCATCAGCGTATGACTTACAACAAGGTCAACAAGAACAGTATTCTCAGTCGAACCAGCCGGTCTCACTAGCGTCTTCTTCAT                                                                                                                                                                                                                                                ]
[-] EMBL CD195430             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ACAGTTAGCTGCTCTTGCTGAAGCTCAGTTAAATTCTAATAATATAGGGATGTACGATTATCCTGATCCATCAGTTAATACTAATTTTCATCAATCTCGAGCGATTTCTACAGCTTATCAACCCCAGTCCGGAATCAATTCGTGTCCAATATCCATGACTCAGAACGGTCAGCGATCTCATATATTTGGCAGTGTTAGTGTGCTCCCTAGTTTTGCCAGTGGTGTTATATCAAATGGTAATTCAGGACATGCAAGTCATGAATTCGTTCCTTCATCATCAGCGTATGACTTACAACAAGGTCAACAAGAACAGTATTCTCAGTCGAACCAGCCGGTCTCACTAGCGTCT                                                                                                                                                                                                                                                       ]
[+] EMBL CD066410             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CATGAATTCGTTCCTTCATCATCAGCGTATGACTTACAACAAGGTCAACAAGAACAGTATTCTCAGTCGAACCAGCCGGTCTCACTAGCGTCTTCTTCATCTGCTGATCTTGATAATAGTAATGATAGGAAGTTCTCAGCACCAGCAACAGGAGAGTCTATTGGACAAGATCCTTCCTCAGATACCAGTCAAACAACAGGCCTGGTATGTCATAATCGTGTATCAGAAAAAATTCAAAAATTAGTCAACATTTTGAAACGTCCCAAACGATATCCATTACCCGAATATTTTCTTGATGATGAAGATCAAGTACTTGTAAGACCTGTTGTTGATCCTACGG]
[+] EMBL CD067512             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 cgTGAGTTCGTTCCTTCATCATCAGCGTATGACTTACAACAAGGTCAACAAGAACAGTATTCTCAGTCGAACCAGCCGGTCTCACTAGCGTCTTCTTCATCTGCTGATCTTGATAATAGTAATGATAGGAAGTTCTCAGCACCAGCAACAGGAGAGTCTATTGGACAAGATCCTTCCTCAGATACCAGTCA                                                                                                                                                     ]


>consensus_11028#0 TGATTGGCCCAGCCTGACCTTGGGGATTTTTTGACCTTTGAAGATGAAGGTCGTTCTCCA TAACGTTCTCTCCTGATGGGAAGTTTAGAGGAGTCCAGATTGCCACTGGAGATCAAAACG AAACTAGCAGAGCTTGAAATTGAACTTTCGGAAGGTGATATAACAGAAAAAGGATACCAG AAAAAGAAACAGAAGCTTCTAGCTCCGTTTATTAACGCTCCGATTAACTCAACTAATTCA TCTAATAACTCACATATTCCTTATGGTGGAGTTTTACTTCCTGGACTTAATGAAACGCAT CATTTAGGCCCACGCGGCCAGGCTGTTGGTTGTGGTGATAATGTTACAGAGTCTTTCAGA AACGAGCCCCAAAATAATTCTCCTATTAATGCTCAAAATCGCAGATACATTCGTGAAAAT CATCGATATCGATCGGATATCCGAGAAGAGGCAGTGAAGGAGGCTTTAGTACAAGCTCGG CAGGAACGTCATGATGCTTTGGCACCTAGTAAACGTCGTGACCCCAGTCGTTTGTCCTGT ATACATCAAACTCCTGAACACGATGCAGCATATTCTGATGATTCGGATGAAGATATGTCA TCAACATCTGCACACATTACGCGTTTAGGGAACAATTTTAACCAGTCATCGGGATTAAGT GAAATCCCAAGTTCAAGTGTACCGACAAATGGCGTTTCCGACAGAAATCAACTTAGAACA TCAACTACTATTACTGGTCAGATACACAAACAACAATCCCCTGCTAATCGATATGATGAA GTGCCTTCTTTAGATGAAATTCGATCCTCTCAACCACCGATTCGATCATCAAATAGAATA AATCAATCAGATGTAAATAATCCATGGACTTACACAAACCAGCCTTCTAATCAACAAAAT GGTAATTTAGATGGAGCATTGAATACGGCTGATTCGTTTGAACAGTTAGCTGCTCTTGCT GAAGCTCAGTTAAATTCTAATAATATAGGGATGTACGATTATCCTGATCCATCAGTTAAT ACTAATTTTCATCAATCTCGAGCGATTTCTACAGCTTATCAACCCCAGTCTGGAATCAAT TCGTGTCCAATATCCATGACTCAGAACGGTCAGCGATCTCATATATTTGGCAGTGTTAGT GTGCTCCCTAGTTGCCAGTGGTGTTATATCAAATGGTAATTCAGGACATGCAAGTCATGA ATTCGTTCCTTCATCATCAGCGTATGACTTACAACAAGGTCAACAAGAACAGTATTCTCA GTCGAACCAGCCGGTCTCACTAGCGTCTTCTTCATCTGCTGATCTTGATAATAGTAATGA TAGGAAGTTCTCAGCACCAGCAACAGGAGAGTCTATTGGACAAGATCCTTCCTCAGATAC CAGTCAAACAACAGGCCTGGTATGTCATAATCGTGTATCAGAAAAAATTCAAAAATTAGT CAACATTTTGAAACGTCCCAAACGATATCCATTACCCGAATATTTTCTTGATGATGAAGA TCAAGTACTTGTAAGACCTGTTGTTGATCCTACGG



consensusID : consensus_11028#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 193
fasta sequence
                              [CAAATAGAATGAATCAATCAGATGTAAATAATCCATGGATTTACACAAACCAGCTTTATAATCAACAAAATGGTAATTTAGATGGAGCATTGAATACGGCTGATTCGTTTGAACAGTTAGCTGCTCTTGCTGAAGTTCAGTTAAATTCTAATAATATAGGCATGTACGTTTATCTTGATTCCCACCTTGACAA]

[-] EMBL CD066516             [CAAATAGAATGAATCAATCAGATGTAAATAATCCATGGATTTACACAAACCAGCTTTATAATCAACAAAATGGTAATTTAGATGGAGCATTGAATACGGCTGATTCGTTTGAACAGTTAGCTGCTCTTGCTGAAGTTCAGTTAAATTCTAATAATATAGGCATGTACGTTTATCTTGATTCCCACCTTGACAA]


>consensus_11028#1 CAAATAGAATGAATCAATCAGATGTAAATAATCCATGGATTTACACAAACCAGCTTTATA ATCAACAAAATGGTAATTTAGATGGAGCATTGAATACGGCTGATTCGTTTGAACAGTTAG CTGCTCTTGCTGAAGTTCAGTTAAATTCTAATAATATAGGCATGTACGTTTATCTTGATT CCCACCTTGACAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11028#0      TGATTGGCCCAGCCTGACCTTGGGGATTTTTTGACCTTTGAAGATGAAGGTCGTTCTCCA 60
consensus_11028#1      ------------------------------------------------------------
                                                                                   

consensus_11028#0      TAACGTTCTCTCCTGATGGGAAGTTTAGAGGAGTCCAGATTGCCACTGGAGATCAAAACG 120
consensus_11028#1      ------------------------------------------------------------
                                                                                   

consensus_11028#0      AAACTAGCAGAGCTTGAAATTGAACTTTCGGAAGGTGATATAACAGAAAAAGGATACCAG 180
consensus_11028#1      ------------------------------------------------------------
                                                                                   

consensus_11028#0      AAAAAGAAACAGAAGCTTCTAGCTCCGTTTATTAACGCTCCGATTAACTCAACTAATTCA 240
consensus_11028#1      ------------------------------------------------------------
                                                                                   

consensus_11028#0      TCTAATAACTCACATATTCCTTATGGTGGAGTTTTACTTCCTGGACTTAATGAAACGCAT 300
consensus_11028#1      ------------------------------------------------------------
                                                                                   

consensus_11028#0      CATTTAGGCCCACGCGGCCAGGCTGTTGGTTGTGGTGATAATGTTACAGAGTCTTTCAGA 360
consensus_11028#1      ------------------------------------------------------------
                                                                                   

consensus_11028#0      AACGAGCCCCAAAATAATTCTCCTATTAATGCTCAAAATCGCAGATACATTCGTGAAAAT 420
consensus_11028#1      ------------------------------------------------------------
                                                                                   

consensus_11028#0      CATCGATATCGATCGGATATCCGAGAAGAGGCAGTGAAGGAGGCTTTAGTACAAGCTCGG 480
consensus_11028#1      ------------------------------------------------------------
                                                                                   

consensus_11028#0      CAGGAACGTCATGATGCTTTGGCACCTAGTAAACGTCGTGACCCCAGTCGTTTGTCCTGT 540
consensus_11028#1      ------------------------------------------------------------
                                                                                   

consensus_11028#0      ATACATCAAACTCCTGAACACGATGCAGCATATTCTGATGATTCGGATGAAGATATGTCA 600
consensus_11028#1      ------------------------------------------------------------
                                                                                   

consensus_11028#0      TCAACATCTGCACACATTACGCGTTTAGGGAACAATTTTAACCAGTCATCGGGATTAAGT 660
consensus_11028#1      ------------------------------------------------------------
                                                                                   

consensus_11028#0      GAAATCCCAAGTTCAAGTGTACCGACAAATGGCGTTTCCGACAGAAATCAACTTAGAACA 720
consensus_11028#1      ------------------------------------------------------------
                                                                                   

consensus_11028#0      TCAACTACTATTACTGGTCAGATACACAAACAACAATCCCCTGCTAATCGATATGATGAA 780
consensus_11028#1      ------------------------------------------------------------
                                                                                   

consensus_11028#0      GTGCCTTCTTTAGATGAAATTCGATCCTCTCAACCACCGATTCGATCATCAAATAGAATA 840
consensus_11028#1      -------------------------------------------------CAAATAGAATG 11
                                                                        ********** 

consensus_11028#0      AATCAATCAGATGTAAATAATCCATGGACTTACACAAACCAGCCTTCTAATCAACAAAAT 900
consensus_11028#1      AATCAATCAGATGTAAATAATCCATGGATTTACACAAACCAGCTTTATAATCAACAAAAT 71
                       **************************** ************** ** *************

consensus_11028#0      GGTAATTTAGATGGAGCATTGAATACGGCTGATTCGTTTGAACAGTTAGCTGCTCTTGCT 960
consensus_11028#1      GGTAATTTAGATGGAGCATTGAATACGGCTGATTCGTTTGAACAGTTAGCTGCTCTTGCT 131
                       ************************************************************

consensus_11028#0      GAAGCTCAGTTAAATTCTAATAATATAGGGATGTACGATTATCCTGATCCATCAGTTAAT 1020
consensus_11028#1      GAAGTTCAGTTAAATTCTAATAATATAGGCATGTACGTTTATCTTGATTCCCACCTTGAC 191
                       **** ************************ ******* ***** **** *     ** * 

consensus_11028#0      ACTAATTTTCATCAATCTCGAGCGATTTCTACAGCTTATCAACCCCAGTCTGGAATCAAT 1080
consensus_11028#1      AA---------------------------------------------------------- 193
                       *                                                           

consensus_11028#0      TCGTGTCCAATATCCATGACTCAGAACGGTCAGCGATCTCATATATTTGGCAGTGTTAGT 1140
consensus_11028#1      ------------------------------------------------------------
                                                                                   

consensus_11028#0      GTGCTCCCTAGTTGCCAGTGGTGTTATATCAAATGGTAATTCAGGACATGCAAGTCATGA 1200
consensus_11028#1      ------------------------------------------------------------
                                                                                   

consensus_11028#0      ATTCGTTCCTTCATCATCAGCGTATGACTTACAACAAGGTCAACAAGAACAGTATTCTCA 1260
consensus_11028#1      ------------------------------------------------------------
                                                                                   

consensus_11028#0      GTCGAACCAGCCGGTCTCACTAGCGTCTTCTTCATCTGCTGATCTTGATAATAGTAATGA 1320
consensus_11028#1      ------------------------------------------------------------
                                                                                   

consensus_11028#0      TAGGAAGTTCTCAGCACCAGCAACAGGAGAGTCTATTGGACAAGATCCTTCCTCAGATAC 1380
consensus_11028#1      ------------------------------------------------------------
                                                                                   

consensus_11028#0      CAGTCAAACAACAGGCCTGGTATGTCATAATCGTGTATCAGAAAAAATTCAAAAATTAGT 1440
consensus_11028#1      ------------------------------------------------------------
                                                                                   

consensus_11028#0      CAACATTTTGAAACGTCCCAAACGATATCCATTACCCGAATATTTTCTTGATGATGAAGA 1500
consensus_11028#1      ------------------------------------------------------------
                                                                                   

consensus_11028#0      TCAAGTACTTGTAAGACCTGTTGTTGATCCTACGG 1535
consensus_11028#1      -----------------------------------
                                                          




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)