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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11030#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 22 consensus length = 1072 fasta sequence
[GAAGCGCGATCTAAAGGCTAAAACATGATGTCAAGTGATGTGGTGCTCCCCGAATTTGGATCCCTTTCTCTCAGCAATAACCCTACAGGTTGGGGCCCAACAGACATACCAGAAGAGTTTAGAAACATGCCTTTTCAGCCATTTTCAAAGGATACCCGCCTAGGCAGAGTTGCAGATTGGTCAGGAAATATTTTTCAAGATATGAAAAACAAAGGTCGCTATGTCTCCCAGTCTGTCGGTTCACAGTACGCTTACTATCATGACGAGGACGACAACAATTTCCAACTGGTTTCTTCCGTTCGTGAAACGAAAACTCCTGCTATTCGTCAAAGATATAGATTCCCTATGCGTGGTCGCCGTGGTTTGGGTGGTCCAGGTGCAGGGTACTCTTGGACAGGAGGCCGGTCA-GGATATCAGATGATCGGAAACCAAGGTGGTGTATTAAACCGCAAGCTACGCAGCGCATCAGACAGAGAACGTATGATGTTACAACAGAATAGACGGTGGCAACACTGGGGACCCCAAGGTGTCGGTCAGCGACGAGGGGGAACCCAAGGTTGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGCACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACACAGTTACGACTTCCAGAGACCCAGTAATTCACCGTCTAGCTAGCGACTCCGTTGGCAAAGTATATTGCACAGATACGATTGCTGCCATGATTATGTGTTGCACTCGTTCGGTGTATCCTTGGGATCTCATTGTACAACGTATACAAGACCGTTTGTTCTTTGATAAGCGCGAAGATGCTGAATCTGATTTCGTTAGTGTATGTGAAACTGCAACAGAACCACCTAATGAAGAACCTGGTCATATTA]
[-] EMBL CD097594 [GAAGCGCGATCTAAAGGCTAAAACATGATGTCAAGTGATGTGGTGCTCCCCGAATTTGGATCCCTTTCTCTCAGCAATAACCCTACAGGTTGGGGCCCAACAGACATACCAGAAGAGTTTAGAAACATGCCTTTTCAGCCATTTTCAAAGGATACCCGCCTAGGCAGAGTTGCAGATTGGTCAGGAAATATTTTTCAAGATATGAAAAACAAAGGTCGCTATGTCTCCCAGTCTGTCGGTTCACAGTACGCTTACTATCATGACGAGGACGACAACAATTTCCAACTGGTTTCTTCCGTTCGCGAAACGAAAACTCCTGCTATTCGTCAAAGATATAGATTCCCTATGCGTGGTCGCCGTGGTTTGGGTGGTCCAGGTGCAGGGTACTCTTGGACAGGAGGCCGGTCA GGATATCAGATGATCGGAAACCAAGGTGGTGTATTAAACCGCTAGCTACGCAGCGCATCAGACAGAGAACGTATGATGTTACAACAGAATAGACG ]
[-] EMBL CD119150 [ CAGCAATAACCCTACAGGTTGGGGCCCAACAGACATACCAGAAGAGTTTAGAAACATGCCTTTTCAGCCATTTTCAAAGGATACCCGCCTAGGCAGAGTTGCAGATTGGTCAGGAAATATTTTTCAAGATATGAAAAACAAAGGTCGCTATGTCTCCCAGTCTGTCGGTTCACAGTACGCTTACTATCATGACGAGGACGACAACAATTTCCAACTGGTTTCTTCCGTTCGTGAAACGAAAACTCCTGCTATTCGTCAAAGATATAGATTCCCTATGCGTGGTCGCCGTGGTTTGGGTGGTCCAGGTGCAGGGTACTCTTGGACAGGAGGCCGGTCA GGATATCAGATGATCGGAAACCAAGGTGGTGTATTAAACCGCAAGCTACGCAGCGCATCAGACAGAGAACGTATGATGTTACAACAGAATAGACGGTGGCAACACTGG ]
[+] EMBL CD156591 [ GTCTCCCAGTCTGTCGGTTCACAGTACGCTTACTATCATGACGAGGACGACAACAATTTCCAACTGGTTTCTTCCGTTCGTGAAACGAAAACTCCTGCTATTCGTCAAATATATAGATTCCCTATGCGTGGTCGCCGTGGTTTGGGTGGTCCAGGTGCAGGGTACTCTTGGACAGGAGGCCGGTCA GGATATCAGATGATCGGAAACCAAGGTGGTGTATTAAACCGCAAGCTACGCAGCGCATCAGACAGACAACGTATGATGTTACAAC ]
[-] EMBL CD196763 [ CCTATGCGTGGTCGCCGTGGTTTGGGTGGTCCAGGTGCAGGGTACTCTTGGACAGGAGGCCGGTCA GGATATCAGATGATCGGAAACCAAGGTGGTGTATTAAACCGCAAGCTACGCAGCGCATCAGACAGAGAACGTATGATGTTACAACAGAATAGACGGTGGCAACACTGGGGACCCCAAGGTGTCGGTCTGCGACGAGGGGGAACCCAAGGTTGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGCACGCGAA ]
[+] EMBL CD086017 [ caCAGGAGGAGGGTACTCTTGGACAGGAGGCCGGTCAGGGATATCAGATGATCGGAAACCAAGGTGGTGTATTAAACCGCAAGCTACGCAGCGCATCAGACAGAGAACGTATGATGTTACAACAGAATAGACGGTGGCAACACTGGGGACCCCAAGGTGTCGGTCAGCGACGAGGGAGAACCCAAGGTTGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTAGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGCACGC ]
[+] EMBL CD130979 [ AGGTGCA GGTACTCTTGGACAGGAGGCCGGTCA GGATATCAGATGATCGGAAACCAAGGTGGTGTATTAAACCGCAAGCTACGCAGCGCATCAGACAGAGAACGTATGATGTTACAACAGAATAGACGGTGGCAACACTGGGGACCCCAAGGTGTCGGTCAGCGACGAGGGGGAACCCAAGGTTGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGAAGAAATGGAG ]
[+] EMBL CD191811 [ GGGTACTCTTGGACAGGAGGCCGGTCA GGATATCAGATGATCGGAAACCAAGGTGGTGTATTAAACCGCAAGCTACGCAGCGCATCAGACAGAGAACGTATGATGTTACAACAGAATAGACGGTGGCAACACTGGGGACCCCAAGGTGTCGGTCAGCGACGAGGGGGAACCCAAGGTTGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGCACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACACAGTTACGACTTCCAGAGACCCAGTAATTCACCGTCTAGCTAGCGACTCCGTTGGCAAAGTATATTGCACAGATACGATTGCTGCCATGATTATGTGTTGCACTCGTTCGGTGTATCCTTGGGAT ]
[+] EMBL CD193897 [ GTATTAAACCGCAAGCTACGCAGCGCATCAGACAGAGAACGTATGATGTTACAACAGAATAGACGGTGGCAACACTGGGGACCCCAAGGTGTCGGTCAGCGACGAGGGGGAACCCAAGGTTGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGAC ]
[+] EMBL CD116109 [ AGACGGTGGCAACACTGGGGACCCCAAGGTGTCGGTCAGCGACGAGGGGGAACCCAAGGTTGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGCACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACACAGTTACGACTTCCAGAGACCCAGTAATTCACCGTCTAGCTAGCGACTCCGTTGGCAAAGTATATTGCACAGATACGATTGCTGCCATGATTATGTGTTGCACTCGTTCGGTGTATCCTTGGGATCTCATTGTACAACGTATACAAGACCGTTTGTTCTTTGATAAGCGCGAAGATGCTGAATCTGATT ]
[-] EMBL CD196224 [ AGACGGTGGCAACACTGGGGACCNCAAGGTGTCGGTCAGCGACGAGGGGGAACNCAAGGTTGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGCACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACAC ]
[+] EMBL CD116298 [ AGACGGTGGCAACACTGGGGACCCCAAGGTGTCGGTCAGCGACGAGGGGGAACCCAAGGTTGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGCACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACACAGTTGCGACTTCCAGAGACCCAGTAATTCACCGTCTAGCTAGCGACTCCGTTGGCAAAGTATATTGCACAGATACGATTGCTGCCATGATTATGTGTTGCTCTCGTTCGGTGTATCCTTGGGATCTCATTGTACAACGTATACAAGACCGTTTGTTCTTTGATAAGCGCGAAGATGCTGAATCTGATTTCGTTAGTGTATGTnccaca ]
[+] EMBL CD156806 [ GGGGGAACCCAAGGTTGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGCACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACACAGTTACGACTTCCAGAGACCCAGTAATTCACCGTCTAGCTAGCGACTCCGTTGGCAAAGTATATTGCACAGATACGATTGCTGCCATGATTATGTGTTGCACTCGTTCGGTGTATCCTTGGGATCT ]
[+] EMBL CD118552 [ TTGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGCACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACACAGTTACGACTTCCAGAGACCCAGTAATTCACCGTCTAGCTAGCGACTCCGTTGGCAAAGTATATTGCACAGATACGATTGCTGCCATGATTATGTGTTGCACTCGTTCGGTGTATCCTTGGGATCT ]
[+] EMBL CD118694 [ TTGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGCACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACACAGTTACGACTTCCAGAGACCCAGTAATTCACCGTCTAGCTAGCGACTCCGTTGGCAAAGTATATTGCACAGATACGATTGCTGCCATGATTATGTGTTGCACTCGTTCGGTGTATCCTTGNGATCT ]
[+] EMBL CD118664 [ TTGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGCACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACACAGTTACGACTTCCAGAGACCCAGTAATTCACCGTCTAGCTAGCGACTCCGTTGGCAAAGTATATTGCACAGATACGATTGCTGCCATGATTATGTGTTGCACTCGTTCGGTGTATCCTTGGGATCT ]
[-] EMBL CD117419 [ TGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGCACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACACAGTTACGACTTCCAGAGACCCAGTAATTCACCGTCTAGCTAGCGACTCCGTTGGCAAAGTATATTGCACAGATACGATTGCTGCCATGATTATGTGTTGCACTCGTTCGGTGTATCCTTGGGATCTCATTGTACAACGTATACAAGACCGTTTGTTCTTTGATAAGCGCGAAGATGCTGAATCTGATTTCGTTAGTGTATGTGAAACTGC ]
[-] EMBL CD117326 [ TGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAACGGAGTATTATGACAAATCATATGACCGTGTTAGCACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACACAGTTACGACTTCCAGAGACCCAGTAATTCACCGTCTAGCTAGCGACTCCGTTGGCAAAGTATATTGCACAGATACGATTGCTGCCATGATTATGTGTTGCACTCGTTCGGTGTATCCTTGGGATCTCATTGTACAACGTATACAAGACCGTTTGTTCTTTGATAAGCGCGAAGATGCTGAATCTGATTTCGTTAGTGTATGTGAAACTGC ]
[-] EMBL CD117527 [ TGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGCACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACACAGTTACGACTTCCAGAGACCCAGTAATTCACCGTCTAGCTAGCGACTCCGTTGGCAAAGTATATTGCACAGATACGATTGCTGCCATGATTATGTGTTGCACTCGTTCGGTGTATCCTTGGGATCTCATTGTACAACGTATACAAGACCGTTTGTTCTTTGATAAGCGCGAAGATGCTGAATCTGATTTCGTTAGTGTATGTGAAACTGC ]
[-] EMBL CD117590 [ TGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGCACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACACAGTTACGACTTCCAGAGACCCAGTAATTCACCGTCTAGCTAGCGACTCCGTTGGCAAAGTATATTGCACAGATACGATTGCTGCCATGATTATGTGTTGCACTCGTTCGGTGTATCCTTGGGATCTCATTGTACAACGTATACAAGACCGTTTGTTCTTTGATAAGCGCGAAGATGCTGAATCTGATTTCGTTAGTGTATGTGAAACTGC ]
[+] EMBL AI976281 [ AGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGCAGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGCACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACACAGTTACGACTTCCAGAGACCCAGTAATTCACCGTCTAGCTAGCGACTCCGTTGGCAAAGTATATTGCACAGATACGATTGCTGCCATGATTATGTGTTGCACTCGTTCGGTGTATCCTTGGGATCTCATTGTACAACGTATACAAGACCGTTTGTTCTTTGATAAGCGCGAAGATGCTGAATCTGATTTCGTTAGTGTATGTGAAACTGCAACAGAACCACCTAATGAAGAACCTGGTCATATTA]
[-] EMBL CD136560 [ CTAATAGTGATCGCAGACAGGCNCATAGGGCAGTGCGTGATGCGTCTATCAAAATTAAGGATAATTGGACAATGTTGGAAGAGCTAGATCTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCTATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGCACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACACAGTTACGACTTCCAGAGACCCAGTAATTCACCGTCTAGCTAGCGACTCCGTTGGCAAAGTATATTGCACAGATACGATTGCTGCCATGATTATGTGTTGCACTCGTTCGGTGTATCCTTGGGATCTC ]
[-] EMBL CD193873 [ CGTGTTAGCACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACACAGTTACGACTTCCAGAGACCCAGTAATTCACCGTCTAGCTAGCGACTCCGTTGGCAAAGTATATTGCACAGATACGATTGCTGCCATGATTATGTGTTGCACTCGTTCGGTGTATCCTTGGGATCTC ]
consensusID : consensus_11030#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence
[AACCAACCACTCTTGTCGCCGCCACCGCCACCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCACCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAACTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACTCANACACCACTCAGGACAACACAATACCTCANACCATCATCAACATTACAACCAGTTCCAGTTGTCACTGCAGTCCAACACGCTACATCAGTCCCCACTAAATCACATCGACCACACTCAACA]
[+] EMBL CD153164 [AACCAACCACTCTTGTCGCCGCCACCGCCACCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCACCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAACTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACTCANACACCACTCAGGACAACACAATACCTCANACCATCATCAACATTACAACCAGTTCCAGTTGTCACTGCAGTCCAACACGCTACATCAGTCCCCACTAAATCACATCGACCACACTCAACA]
consensusID : consensus_11030#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 553 fasta sequence
[TCCTCCAGTCTTTAATGTCATTATCTTGCGTGTTCAGTCTCTTTCAACTAATGATTNTGCTTTGTAGTCATATTGGTCACATTTTTACGCATACGGGTTGCTGTAATTTCTGTTGAAGAACTTAATTGACCTTCAGATCTCGAATCAAACTGTCACATGCTATATTATTTTTACCCAGTATGCTAAATACTTCCTTACTTGCATCGGATTTACATAACTATGGGTCATACAAATTTTTAATCTACATTATTGTTTAATGATTTATTGGAGCCGTTTGTGTAACTAAAATATATCGTTTTTCTCTCCTCGATAAAATGCTTACGACCTTCATTCCACTCGTCCACTCATGAATATAATTGTACTATGTTATTTT--ACTTC--ATATGTTTGATCATCGAATCATCCAACTATAT-CCTTCTCATGCTCTCCATATATATATATATATATATATATATATATATATATATATATATATATATATATGCTGAAATTCAAT-TATTTCTAGGATTCAGTTTTGAGCAAAAATATACTAAAAGCTCCATTAACCTTATGATTT]
[-] EMBL AW017172 [TCCTCCAGTCTTTAATGTCATTATCTTGCGTGTTCAGTCTCTTTCAACTAATGATTNTGCTTTGTAGTCATATTGGTCACATTTTTACGCATACGGGTTGCTGTAATTTCTGTTGAAGAACTTAATTGACCTTCAGATCTCGAATCAAACTGTCACATGCTATATTATTTTTACCCAGTATGCTAAATACTTCCTTACTTGCATCGGATTTACATAACTATGGGTCATACAAATTTTTAATCTACATTATTGTTTAATGATTTATTGGAGCCGTTTGTGTAACTAAAATATATCGTTTTTCTCTCCTCGATAAAATGCTTACGACCTTCATTCCACTCGTCCACTCATGAATATAATTGTACTATGTTATTTT ACTTC ATATGTTTGATCATCGAATCATCCAACTATAT CCTTCTCATGCTCTCCATATATATATATATATATATATATATATATATATATATATATATATATATATATGCTGAAATTCAAT TATTTCTAGGATTCAGTTTTGAGCAAAAATATACTAAAAGCTCCATTAACCTTATGATTT]
[+] EMBL AI820464 [ GGTTGCTGTAATTTCTGTTGAAGAACTTAATTGACCTTCAGATCTCGAATCAAACTGTCACATGCTATATTATTTTTACCCAGTATGCTAAATACTTCCTTACTTGCATCGGATTTACATAACTATGGGTCATACAAATTTTTAATCTACATTATTGTTTAATGATTTATTGGAGCCGTTTGTGTAACTAAAATATATCGGTTTTCTCTCCTCGATAAAATGCTTACGACCTTCATTCCACTCGTCCACTCATG ATATTATTGGACTAAGGTAATTTACACTTCCAATA GATTGATCATCGAATCATCCAA TATATACCTTCTCCAGC CTCCATATATATATATATATATATATATATATATATATATATATATATATATATATA GCGGAAATTCACTATA TTCTAGAGTTCAGTTTTTAGAAAAAATACA TAAg ]
consensusID : consensus_11030#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 483 fasta sequence
[GAATTTAGGCTATATCGAGGCAATACGCACAGTATGCACATATGCCAATTAGAGACTAACCAGTTGCAGTCCTAACGTATCGATGGGAAGATTCAAACAAACAATACTAAATGAATTTTCCAGTTCATTTAATGAATGAGTACTGCATGTAAGAGTATAATTTTCACTCAGGATTTCATTTCAAACTCTAACTTCGACTTTATTTACTTTTTTCATCCGACAAGTTTAAACGTACAACAGTGATTGTTCATAAAAGACGTATGTATGTAATGAAGGAGAAGTCAGGTGGGACAACCAATTTATTGTTTAATACAAAATTACAAAAATTCTTGGTAAAATATGAGAACCATACATTAAATACTTCATTTAAGAATTTTCATCATTTGTCCTTCACATTCGGTATGATTCTTCCAATTGATAATTCCTTTCTGTTCTCTTCAACTCGATCTTCTTGGCCTTCTGCTGGCAGGTTTTTCACTTCCG]
[+] EMBL CD089782 [GAATTTAGGCTATATCGAGGCAATACGCACAGTATGCACATATGCCAATTAGAGACTAACCAGTTGCAGTCCTAACGTATCGATGGGAAGATTCAAACAAACAATACTAAATGAATTTTCCAGTTCATTTAATGAATGAGTACTGCATGTAAGAGTATAATTTTCACTCAGGATTTCATTTCAAACTCTAACTTCGACTTTATTTACTTTTTTCATCCGACAAGTTTAAACGTACAACAGTGATTGTTCATAAAAGACGTATGTATGTAATGAAGGAGAAGTCAGGTGGGACAACCAATTTATTGTTTAATACAAAATTACAAAAATTCTTGGTAAAATATGAGAACCATACATTAAATACTTCATTTAAGAATTTTCATCATTTGTCCTTCACATTCGGTATGATTCTTCCAATTGATAATTCCTTTCTGTTCTCTTCAACTCGATCTTCTTGGCCTTCTGCTGGCAGGTTTTTCACTTCCG]
[+] EMBL CD089718 [GAATTTAGGCTATATCGAGGCAATACGCACAGTATGCACATATGCCAATTAGAGACTAACCAGTTGCAGTCCTAACGTATCGATGGGAAGATTCAAACAAACAATACTAAATGAATTTTCCAGTTCATTTAATGAATGAGTACTGCATGTAAGAGTATAATTTTCACTCAGGATTTCATTTCAAACTCTAACTTCGACTTTATTTACTTTTTTCATCCGACAAGTTTAAACGTACAACAGTGATTGTTCATAAAAGACGTATGTATGTAATGAAGGAGAAGTCAGGTGGGACAACCAATTTATTGTTTAATACAAAATTACAAAAATTCTTGGTAAAATATGAGAACCATACATTAAATACTTCATTTAAGAATTTTCATCATTTGTCCTTCACATTCGGTATGATTCTTCCAATTGATAATTCCTTTCTGTTCTCTTCAACTCGATCTTCTTGGCCTTCTG ]
consensusID : consensus_11030#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence
[AGAATTATCTTCTTCTTCTTCTTCTTCGATTACCACAAACAGCTACTGGAGTTAAAACTGGTAGCAGTTTGACAATTGGCGTTGAAGTGTCAAAATCGGACTTTCCTACCACCCGGAGCAACAAGATCGATGTTACGTTTGAAAAAGTTGATCAATTCTAAAAATACTCCATTTCAAACACGTAATCCATTCTCATTACCTGTCAAACGTCTATGGTGTTATTTAGTTCGACAATCTGGAATAGATGATATATTTTTACGTCATATATTTCGTAAACCATATCTTATACAATCCGTTATTACACCGAATATTAAATTAACATTATCACCATCATCATCATCATCATCATCATCAGTTACTTTTGGATCATCGGAACTTAACAATCTACCTGGTTTAATAAATTCTACATCATCGTCTAATCTGAAAACTGTTTCTTCTGCTGCATCG]
[+] EMBL BF936974 [AGAATTATCTTCTTCTTCTTCTTCTTCGATTACCACAAACAGCTACTGGAGTTAAAACTGGTAGCAGTTTGACAATTGGCGTTGAAGTGTCAAAATCGGACTTTCCTACCACCCGGAGCAACAAGATCGATGTTACGTTTGAAAAAGTTGATCAATTCTAAAAATACTCCATTTCAAACACGTAATCCATTCTCATTACCTGTCAAACGTCTATGGTGTTATTTAGTTCGACAATCTGGAATAGATGATATATTTTTACGTCATATATTTCGTAAACCATATCTTATACAATCCGTTATTACACCGAATATTAAATTAACATTATCACCATCATCATCATCATCATCATCATCAGTTACTTTTGGATCATCGGAACTTAACAATCTACCTGGTTTAATAAATTCTACATCATCGTCTAATCTGAAAACTGTTTCTTCTGCTGCATCG]
consensusID : consensus_11030#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 343 fasta sequence
[AATTGATCAGTCTCTTATTGGCATATGTGCATACTGTGCGTATTGCCTCGATATTGCCTTAACTCACATGGATTATAAGCAAAGATGGATGGTGGCTAGCAGGGAATCCAGAACGCGCGTTTCGTCCTATTTGGCACTCGTCTGCTGGATGTAGCTGCATCTCACCGTTGATGTTCACTCTGGGACTTGAACGCAGTACCTCTCGCTCCAAACATCATCGCGTTATCCACTCACCTACCGAGACCTGATAGCCACTTACTTGTGCAATGTGTTTTTCCATGGATTTGTAATTGTGGATGAACATGAGAAAAAGGTAATGAATATTTGTTAATATAAATTTTTC]
[+] EMBL AI740227 [AATTGATCAGTCTCTTATTGGCATATGTGCATACTGTGCGTATTGCCTCGATATTGCCTTAACTCACATGGATTATAAGCAAAGATGGATGGTGGCTAGCAGGGAATCCAGAACGCGCGTTTCGTCCTATTTGGCACTCGTCTGCTGGATGTAGCTGCATCTCACCGTTGATGTTCACTCTGGGACTTGAACGCAGTACCTCTCGCTCCAAACATCATCGCGTTATCCACTCACCTACCGAGACCTGATAGCCACTTACTTGTGCAATGTGTTTTTCCATGGATTTGTAATTGTGGATGAACATGAGAAAAAGGTAATGAATATTTGTTAATATAAATTTTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11030#1 ------------------------------------------------------------
consensus_11030#4 ------------------------------------------------------------
consensus_11030#3 ------------------------------------------------------------
consensus_11030#2 ------------------------------------------------------------
consensus_11030#5 ------------------------------------------------------------
consensus_11030#0 GAAGCGCGATCTAAAGGCTAAAACATGATGTCAAGTGATGTGGTGCTCCCCGAATTTGGA 60
consensus_11030#1 ------------------------------------------------------------
consensus_11030#4 ------------------------------------------------------------
consensus_11030#3 ------------------------------------------------------------
consensus_11030#2 ------------------------------------------------------------
consensus_11030#5 ------------------------------------------------------------
consensus_11030#0 TCCCTTTCTCTCAGCAATAACCCTACAGGTTGGGGCCCAACAGACATACCAGAAGAGTTT 120
consensus_11030#1 ------------------------------------------------------------
consensus_11030#4 ------------------------------------------------------------
consensus_11030#3 ------------------------------------------------------------
consensus_11030#2 ------------------------------------------------------------
consensus_11030#5 ------------------------------------------------------------
consensus_11030#0 AGAAACATGCCTTTTCAGCCATTTTCAAAGGATACCCGCCTAGGCAGAGTTGCAGATTGG 180
consensus_11030#1 ------------------------------------------------------------
consensus_11030#4 ------------------------------------------------------------
consensus_11030#3 ------------------------------------------------------------
consensus_11030#2 ------------------------------------------------------------
consensus_11030#5 ------------------------------------------------------------
consensus_11030#0 TCAGGAAATATTTTTCAAGATATGAAAAACAAAGGTCGCTATGTCTCCCAGTCTGTCGGT 240
consensus_11030#1 ------------------------------------------------------------
consensus_11030#4 ------------------------------------------------------------
consensus_11030#3 ------------------------------------------------------------
consensus_11030#2 ------------------------------------------------------------
consensus_11030#5 ------------------------------------------------------------
consensus_11030#0 TCACAGTACGCTTACTATCATGACGAGGACGACAACAATTTCCAACTGGTTTCTTCCGTT 300
consensus_11030#1 ------------------------------------------------------------
consensus_11030#4 ------------------------------------------------------------
consensus_11030#3 ------------------------------------------------------------
consensus_11030#2 ------------------------------------------------------------
consensus_11030#5 ------------------------------------------------------------
consensus_11030#0 CGTGAAACGAAAACTCCTGCTATTCGTCAAAGATATAGATTCCCTATGCGTGGTCGCCGT 360
consensus_11030#1 -------------------------------------------------AACCAACCACT 11
consensus_11030#4 ------------------------------------------------------------
consensus_11030#3 ------------------------------------------------------------
consensus_11030#2 ------------------------------------------------------------
consensus_11030#5 ------------------------------------------------------------
consensus_11030#0 GGTTTGGGTGGTCCAGGTGCAGGGTACTCTTGGACAGGAGGCCGGTCAGGATATCAGATG 420
consensus_11030#1 CTTGTCGCCGCCACCGCCACCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCA 71
consensus_11030#4 ------------------------------------------------------------
consensus_11030#3 ------------------------------------------------------------
consensus_11030#2 ------------------------------------------------------------
consensus_11030#5 ------------------------------------------------------------
consensus_11030#0 ATCGGAAACCAAGGTGGTGTATTAAACCGCAAGCTACGCAGCGCATCAGACAGAGAACGT 480
consensus_11030#1 ATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCA 131
consensus_11030#4 ------------------------------------AGAATTA----TCTTCTTCTTCTT 20
consensus_11030#3 -------------------------------------GAATTTAGGCTATATCGAGGCAA 23
consensus_11030#2 --------------------------------TCCTCCAGTCTTTAATGTCATTATCTTG 28
consensus_11030#5 ------------------------------------------------------------
consensus_11030#0 ATGATGTTACAACAGAATAGACGGTGGCAACACTGGGGACCCCAAGGTGTCGGTCAGCGA 540
consensus_11030#1 CTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCAC 191
consensus_11030#4 CTTCTTCGATTACCA--CAAACA-----------GCTACTGGAGTTAA--AACTGGTAGC 65
consensus_11030#3 TACGCACAGTATGCACATATGC-------------CAATTAGAGACTA---ACCAGTTGC 67
consensus_11030#2 CGTGTTCAGTCTCTT--TCAACTA----ATGATTNTGCTTTGTAGTCAT--ATTGGTCAC 80
consensus_11030#5 ------------------------------------------------------------
consensus_11030#0 CGAGGGGGAACCCAAGGTTGGAGATCCAATGCAGGTGCTTGGGGCTCTAATAGTGATCGC 600
consensus_11030#1 TCTTGTC-GCC-GCCACC-GCCACCGCCACAA-AAACTATACTC--CCGTCTAGTCA--G 243
consensus_11030#4 AGTT-TG-ACA-ATTGGC-GTTGAAGTGTCAA-AATCGGACTTT--CCTACCACCCG--G 116
consensus_11030#3 AGTCCTA-ACGTATCGAT-GGGAAGATTCAAACAAACAATACTAAATGAATTTTCCA--G 123
consensus_11030#2 ATTTTTACGCATACGGGTTGCTGTAATTTCTGTTGAAGAACTTAATTGACCTTCAGA--T 138
consensus_11030#5 -----------------------------------------------------------A 1
consensus_11030#0 AGACAGGCCCATAGGGCAGTGCGTGATGCGTCTATTCAAATTAAGGATAATTGGACAATG 660
consensus_11030#1 TACACTCCA--ATTCAAAAATACACTCGC-----TCGCTCACATCTCT---CGATACAAC 293
consensus_11030#4 AGCAA-CAA--GATCGATGTTACGTTTGAAAAAGTTGATCAATTCTAA---AAATACTCC 170
consensus_11030#3 TTCATTTAATGAATGAGTACTGCATGTAAGAGTATAATT---TTCACT---CAGGATTTC 177
consensus_11030#2 CTCGAATCA--AACTGTCACATGCTATATTATTTTTACCCAGTATGCT---AAATACTTC 193
consensus_11030#5 ATTGATCAGTCTCTTATTGGCATATGTGCATACTGTGCGTA-TTGCCT---CGATATTGC 57
consensus_11030#0 TTGGAAGAGCTAGATTTCGCTAGACTTGCAAAGTTGGCCCTACCTAATGTAAAGGAGCCT 720
*
consensus_11030#1 TACA-CCTCTTC-------ACAGTCC-ACTCTCTCCATC--GCCAAACCAACACCACCGT 342
consensus_11030#4 ATTT-CAAACAC-------GTAATCC-ATTCTCATTACCT-GTCAAACGTCTATGGTGTT 220
consensus_11030#3 ATTT-CAAACTC-------TAACTTCGACTTTATTTACTTTTTTCATCCGACAAGTTTAA 229
consensus_11030#2 CTTA-CTTGCAT-------CGGATTTACATAACTATGGGTCATACAAATTTTTAATCTAC 245
consensus_11030#5 CTTAACTCACAT-------GGATTATAAGCAAAGATGGAT-----GGTGGCTAGCAGGGA 105
consensus_11030#0 ATTGACAAAGTTAATTGTGGAGAAATGGAGTATTATGACAAATCATATGACCGTGTTAGC 780
*
consensus_11030#1 CTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAA 402
consensus_11030#4 ATTTAGTTC-GACAATCTGGAATAGATGATATATTTTTACGTCATA-----TATTTCGTA 274
consensus_11030#3 ACGTACAAC-AGTGATTGTTCATAAAAGACGTATGTATGTAATGAAGGAGAAGTCAGGTG 288
consensus_11030#2 ATTATTGTTTAATGATTTATTG-GAGCCGTTTGTGTAACTAAAATATATCGTTTTTCTCT 304
consensus_11030#5 ATCCAGAACGCGCGTTTCGTCCTATTTGGCACTCGTCTGCTGGATGT----AGCTGCATC 161
consensus_11030#0 ACGCGAAACGAACGTCCTCTTGTAAGAGTAAATCGGGTTCTCCACAC----AGTTACGAC 836
consensus_11030#1 ----AACTATACTCCCGTCTAGTCAGTACACTCCAA-----CTCAAAAATACACTCGCTC 453
consensus_11030#4 ----AACCATA-TCTTATACAATCCGT-TATTACA------CCGAATATTAAATTAACAT 322
consensus_11030#3 GGACAACCAATTTATTGTTTAATACAA-AATTACAAAAATTCTTGGTAAAATATGAGAAC 347
consensus_11030#2 CCTCGATAAAATGCTTACGACCTTCATTCCACTCGTCCACTCATGAATATAATTGTACTA 364
consensus_11030#5 -----TCACCGTTGATGTTCACTCTGGGACTTGAA------CGCAGTACCTCTCGCTCCA 210
consensus_11030#0 TTCCAGAGACCCAGTAATTCACCGTCTAGCTAGCGACTCCGTTGGCAAAGTATATTGCAC 896
consensus_11030#1 GCTCACATCTCTCGATACAACTACACCTC--TTCACAG---TCCACTCTCTCCAT-CGCC 507
consensus_11030#4 TATCACCATCATCATCATCATCA----TC--ATCATCA---GTTACTTT-TGGAT-CATC 371
consensus_11030#3 CAT-ACATTAAATACTTCATTTAAGAATT--TTCATCA---TTTGTCCTTCACATTCGGT 401
consensus_11030#2 TGTTATTTTACTTCATATGTTTGATCATCGAATCATCCAACTATATCCTTCTCATGCTCT 424
consensus_11030#5 AACATCATCGCGTTATCCACTCACCTACCGAGACCTGA----TAGCCACTTACTTGTGCA 266
consensus_11030#0 AGATACGATTGCTGCCATGATTATGTGTTGCACTCGTTCGGTGTATCCTTGGGATCTCAT 956
*
consensus_11030#1 AAACCAACACTCANACACC-ACTCAGGACAACACAATACCTCANACCAT-CATCAACATT 565
consensus_11030#4 GGAAC----TTAACAATCT-ACCTGGTTTAATAAA---TTCTACATCAT-CGTCTAATCT 422
consensus_11030#3 ATGATTCTTCCAATTGATA-ATTCCTTTCTGTTCTC--TTCAACTCGAT-CTTCTTGGCC 457
consensus_11030#2 CCATATATATATATATATATATATATATATATATATATATATATATATA-TATATATGCT 483
consensus_11030#5 ATGTGTTTTTCCATGGATTTGTAATTGTGGATGAACATGAGAAAAAGGT-AATGAATATT 325
consensus_11030#0 TGTACAACGTATACAAGACCGTTTGTTCTTTGATAAGCGCGAAGATGCTGAATCTGATTT 1016
* * *
consensus_11030#1 ACAACCAGTTCCAGTTGTCACTGCAGTCCAACACGCTACATCAGTCCCCACTAAATCACA 625
consensus_11030#4 GAAAACTGTTTCTTCTGCTGCATCG----------------------------------- 447
consensus_11030#3 TTCTGCTGGCAGGTTTTTCACTTCCG---------------------------------- 483
consensus_11030#2 GAAATTCAATTATTTCTAGGATTCAGTTTTGAGCAAAAATATACTAAAAGCTCCATTAAC 543
consensus_11030#5 TGTTAATATAAATTTTTC------------------------------------------ 343
consensus_11030#0 CGTTAGTGTATGTGAAACTGCAACAGAACCACCTAATGAAGAACCTGGTCATATTA---- 1072
consensus_11030#1 TCGACCACACTCAACA 641
consensus_11030#4 ----------------
consensus_11030#3 ----------------
consensus_11030#2 CTTATGATTT------ 553
consensus_11030#5 ----------------
consensus_11030#0 ----------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||