These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11032#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1212 fasta sequence [TCAATTATCAAACAAATTCCAGAAGCTAAAAGTATAGGTTTGTTACAATTGTGTGACTTCATAGAGGATTGTGAACATGTTAAACTAACACAGCGTATACTCCATCTGTTAGGGCGGGAGGGACCTTACCTCAAACGTCCTCGTCAATTTACGCGTTACATTTACAATAGAGTTATGCTCGAGTCAGCTCCCATTAAGTGCACAGCTACAACAGCTCTGGCGAGATTTGCTGCACACAATGAGGAATTACTTCCGAGTATTCTTGTACTTCTTAAACGAATTATGATTGATGAAGACGATGAGGTTCGTGATCGCGCAGC-TTTCTA-CCACTATATTTTATCAAATAACCAAGTAGCATTAAAATCTGCTTACCTTTT-AAGTGAAGAAATGCATCTAAGTCCATCTGGTTTAGAGCGTGCTTTGTTGGATTATGTGCATAACTCCCACACA-GT-TGCTGGTAGTCCTTTCTCTTTGACGACAGTCCCAATAGCTGATATTGTTCAGCCAAATGA-CCTTAGTTCTGCCATTG-AATCGGATGTTGTAAAGATTAAAGCTAAACCTAATGCGATGGCTGGTGAAGGTCGAAACACATCACTTGCTTCTCAG-ATGTCA-GGAAAAC-GTATTCAAGATTCATTTGCTGAGCAGCTGGCATCTATACCCGAATTTTCTGATCTTGGCTCTATATTCAAATCTTCCTCCCCGGTAGAATTAACTGAATCTGACACTGAATATGTAGTAACATGCATAAAACATTTATTCTCAAGGCATTTAGTCTTGCAGTTTGATTGTATCAATACAATGGCAGACCAAGTCTTGGAGAATGTCTATGTCTCGTGCGAGCCGGACGACTCCCTGTTTAATATTGTCTGCACAG-TACCTTGC-AAAAGCTTAAAGTATAATTCTCCCGCTGTGACGTATGTTCTAGTTGAGTTGCCGGAGGATCTGGAATGTCATTCTGCTACTTTTATCAACACATTGAAATTTACTATCAAAGATACTGACTCTGACCCTTCGGATCCTGGTTTGCCAGATGAATATCAATT-GGAAGACCTGGTCCTAGGTATCTCAGACCATATTCAACGTGTTTCAAAACAAAACTTTACAGTGGCCTGGCAGGAACTCAGCCCTGAAAGTGAAGTAGAAGAGACGTATATGCTGGTGAAGCACAAGACTATTAAAGAAACGATGCGTCAAATTATCGACACCTGCCTG] [-] EMBL CD095177 [TCAATTATCAAACAAATTCCAGAAGCTAAAAGTATAGGTTTGTTACAATTGTGTGACTTCATAGAGGATTGTGAACATGTTAAACTAACACAGCGTATACTCCATCTGTTAGGGCGGGAGGGACCTTACCTCAAACGTCCTCGTCAATTTACGCGTTACATTTACAATAGAGTTATGCTCGAGTCAGCTCCCATTAAGTGCACAGCTACAACAGCTCTGGCGAGATTTGCTGCACACAATGAGGAATTACTTCCGAGTATTCTTGTACTTCTTAAACGAACTATGATTGATGAAGACGATGAGGTTCGTGATCGCGCAGC TTTCTA CCACTATATTTTATCAAATAACCAAGTAGCATTAAAATCTGCTTACCTTTT AAGTGAAGAAATGCATCTAAGTCCATCTGGTTTAGAGCGTGCTTTGTTGGATTATGTGCATAACTCCCACACA GT TGCTGGTAGTCCTT ] [+] EMBL CD159640 [ CTAACACAGCGTATACTCCATCTGTTAGGGCGGGAGGGACCTTACCCCAAACGTCCTCGTCAATTTACGCGTTACATTTACAATAGAGTTATGCTCGAGTCAGCTCCCATTAAGTGCACAGCTACAACAGCTCTGGCGAGATTTGCTGCACACAATGAGGAATTACTTCCGAGTATTCTTGTACTTCTTAAACGAATTATGATTGATGAAGACGATGAGGTTCGTGATCGCGCAGC TTTCTA CCACTATATTTTATCAAATAACCAAGTAGCATTAAAATCTGCTTACCTTTT AAGTGAAGAAATGCATCTAAGTCCATCTGGTTTAGAGCGTGCTTTGTTGGATTATGTGCATAACTCCCACACA GT TGCTGGTAGTCCTTTCTCTTTGACGACCGTCCCAATAGCTGATATTt ] [+] EMBL CD168942 [ acgtttTCTGTTAGAGCACGAGGGACCTTACCTCAAACGTCCTCGTCAATTTACGCGTTACATTTACAACAGAGTTATGCTCGAGTCAGCTCCCATTAAGTGCACAGCTACAACAGCTCTGGCGAGATTTGCTGCACACAATGAGGAATTACTTCCGAGTATTCTTGTACTTCTTAAACGAATTATGATTGATGAAGACGATGAGGTTCGTGATCGCGCAGC TTTCTA CTACTATA ] [+] EMBL CD169091 [ CTTACCTCAAACGTCCTCGTCAATTTACGCGTTACATTTACAATAGAGTTATGCTCGAGTCAGCTCCCATTAAGTGCACAGCTACAACAGCTCTGGCGAGATTTGCTGCACACAATGAGGAATTACTCCCGAGTATTCTTGTACTTCTTAAACGAATTATGATTGATGAAGACGATGAGGTTCGTGATCGCGCAGC TTTCTA CTACTATATTTTATCAAATAACCAAGTAGCATTAAAATCTGCTTACCTTTT AAGTGAAGAAATGCATCTAAGTCCATCTGGTTTAGAGCGTGCTTTGTTGGATTATGTGCATAACTCCCAC CAGGTGTGCTGGTAGTCCTTTCTCTTTGACGACAGTCCCAATAGCTGATATTGTTCANCCAAATGACCCTTAGTTCTGCCACTGAAATCGGATGTTGTAAAGATTAAAGCTAAACCTAATGCGATGGCTGGT ] [+] EMBL CD195561 [ GTGCACAGCTACAACAGCTCTGGCGAGATTTGCTGCACACAATGAGGAATTACTTCCGAGTATTCTTGTACTTCTTAAACGAATTATGATTGATGAAGACGATGAGGTTCGTGATCGCGCAGC TTTCTA CCACTATATTTTATCAAATAACCAAGTAGCATTAAAATCTGCTTACCTTTT AAGTGAAGAAATGCATCTAAGTCCATCTGGTTTAGAGCGTGCTTTGTTGGATTATGTGCATAACTCCCACACA GT TGCTGGTAGTCCTTTCTCTTTGACGAC ] [-] EMBL CD116050 [ TTCNGAGTATTCTTGTACTTCTTAANCGAATTATGATTGATGAAGACGATGAGGTTCGTGATCGCGCAGC TTTCTA CTACTATA TTTATCAAATANCCAAGTAGCATTAAAATCTGCTTACCTNTT AGTGAAGAAATGCATCTAAGTCCATCTGGTNTAGAGCGTGCTNTGTTGGATTATGTGCATAACTCCCACACA GT TGCTGGTAGTCCTTTCTCTTTGACGACAGTCCCAATAGCTGATATTGTTCAGCCAAATGA CCTTAGTTCTGCCATTG AATCGGATGTTGTAAAGATTAAAGCTAAACCTAATGCGATGGCTGGTGAAGGTCGTAACACATCACTTGCTTCTCAG ATGTCA GGAAAAC GTATTCAAGATTCATTTGCTGAGCAGCTAGCATCTATACCCGAATTTTCTGGTCTTGGCTCTATATTCAAATCTTCCTCCCCGGTAGAATTAACTGAATCTGACACTGAATATGTAGTAACATGCATAAAACATTTATTCTCAAGGCATTTAGTCTTGCAGTTTGATTGTATCAATACAATGGCAGACCAAGTCTTGGAGAATGTCTATGTCTCGTGCGAGCCGGACGACTCCCTGTTTAATATTGTCTGCACAG TACCTTGC AAAAGCTTAAAGTATAATTCTCCCGCTGTGACGTATGTTCTAGTTGAGTTGCCGGA ] [+] EMBL CD112772 [ AGCTTTTCTACCCACTATATTTTATCAAATAACCAAGTAGCATTAAAATCTGCTTACCTTTTAAAGTGAAGAAATGCATCTAAGTCCATCTGGTTTAGAGCGTGCTTTGTTGGATTATGTGCATAACTCCCACACA GT TGCTGGTAGTCCTTTCTCTTTGACGACAGTCCCAATAGCTGATATTGTTCAGCCAAATGA CCTTAGTT ] [-] EMBL CD134889 [ GACGACAGTCCCAATAGCTGATATTGTTCAGCCAAATGA CCTTAGTTCTGCCATTG AATCGGATGTTGTAAAGATTAAAGCTAAACCTAATGCGATGGCTGGTGAAGGTCGAAACACATCACT ] [+] EMBL BF936231 [ GACAGTCCCAATAGCTGATATTGTTCAGCCAAATGA CCTTAGTTCTGCCATTG AATCGGATGTTGTAAAGATTAAAGCTAAACCTAATGCGATGGCTGGTGAAGGTCGAAACACATCACTTGCTTCTCAG ATGTCA GGAAAAC GTATTCAAGATTCATTTGCTGAGCAGCTGGCATCTATACCCGAATTTTCTGATCTTGGCTCTATATTCAAATCTTCCTCCCCGGTAGAATTAACTGAATCTGACACTGAATATGTAGTAACATGCATAAAACATTTATTCTCAAGGCATTTAGTCTTGCAGTTTGATTGTATCAATACAATGGCAGACCAAGTCTTGGAGAATGTCTATGTCTCGTGCGAGCCGGACGACTCCCTGTTTAATATTGTCTGCACAG TACCTTGC AAAAGCTTAAAGTATAATTCTCCCGCTGTGACGTATGTTCTAGTTGAGTTGCCGGAGGATCTGGAATGTCATTCTGCTACTTTTATCAACACATTGAAATTTACTATCAAAGAT ] [+] EMBL AI975466 [ GACAGTCCCAATAGCTGATATTGTTCAGCCAAATGA CCTTAGTTCTGCCATTG AATCGGATGTTGTAAAGATTAAAGCTAAACCTAATGCGATGGCTGGTGAAGGTCGAAACACATCACTTGCTTCTCAG ATGTCA GGAAAAC GTATTCAAGATTCATTTGCTGAGCAGCTGGCATCTATACCCGAATTTTCTGATCTTGGCTCTATATTCAAATCTTCCTCCCCGGTAGAATTAACTGAATCTGACACTGAATATGTAGTAACATGCATAAAACATTTATTCTCAAGGCATTTAGTCTTGCAGTTTGATTGTATCAATACAATGGCAGACCAAGTCTTGGAGAATGTCTATGTCTCGTGCGAGCCGGACGACTCCCTGTTTAATATTGTCTGCACAG TACCTTGC AAAAGCTTAAAGTATAATTCTCCCGCTGTGACGTATGTT ] [+] EMBL AI975502 [ GACAGTCCCAATAGCTGATATTGTTCAGCCAAATGA CCTTAGTTCTGCCATTG AATCGGATGTTGTAAAGATTAAAGCTAAACCTAATGCGATGGCTGGTGAAGGTCGAAACACATCACTTGCTTCTCAG ATGTCA GGAAAAC GTATTCAAGATTCATTTGCTGAGCAGCTGGCATCTATACCCGAATTTTCTGATCTTGGCTCTATATTCAAATCTTCCTCCCCGGTAGAATTAACTGAATCTGACACTGAATATGTAGTAACATGCATAAAACATTTATTCTCAAGGCATTTAGTCTTGCAGTTTGATTGTATCAATACAATGGCAGACCAAGTCTTGGAGAATGTCTATGTCTCGTGCGAGCCGGACGACTCCCTGTTTAATATTGTCTGCACAG TACCTTGC AAAAGCTTAAAGTATAATTCTCCCGCTGTGACGTATG ] [+] EMBL CD060883 [ CTCAGCATGTCATGGAAAACTGTATTCAAGATTCATTTGCTGAGCAGCTGGCATCTATACCCGAATTTTCTGATCTTGGCTCTATATTCAAATCTTCCTCCCCGGTAGAATTAACTGAATCTGACACTGAATATGTAGTAACATGCATAAAACATTTATTCTCAAGGCATTTAGTCTTGCAGTTTGATTGTATCAATACAATGGCAGACCAAGTCTTGGAGAATGTCTATGTCTCGTGCGAGCCGGACGACTCCCTGTTTAATATTGTCTGCACAG TACCTTGC AAAAGCTTAAAGTATAATTCTCCCGCTGTGACGTATGTTCTAGTTGAGTTGCCGGAGGATCTGGAATGTCATTCTGCTACTTTTATCAACACATTGAAATTTACTATCAAAGATACTGACTCTGACCCTTCGGATCCTGGTTTGCCAGATGAATATCAATT GGAAGACCTGGTCCTAGGTATCTCAGACCA ] [+] EMBL AA999213 [ TAGTAACATGCATAAAACATTTATTCTCAAGGCATTTAGTCTTGCAGTTTGATTGTATCAATACAATGGCAGACCAAGTCTTGGAGAATGTCTATGTCTCGTGCGAGCCGGACGACTCCCTGTTTAATATTGTCTGCACAG TACCTTGC AAAAGCTTAAAGTATAATTCTCCCGCTGTGACGTATGTTCTAGTTGAGTTGCCGGAGGATCTGGAATGTCATTCTGCTACTTTTATCAACACATTGAAATTTACTATCAAAGATACTGACTCTGACCCTTCGGATCCTGGTTTGCCAGATGAATATCAATTGGGAAGACCTGGCCCTAGGTATCTCAGACCATATTCAACGTGTTTCAAAACA ] [+] EMBL CD061141 [ GTCTTGGAGAATGTCTATGTCTCGTGCGAGCCGGACGACTCCCTGTATAATATTGTCTGCACAGATACCTTGCAAAAAGCTTAAAGTATAATTCTCCCGCTGTGACGTATGTTCTAGTTGAGTTGCCGGAGGATCTGGAATGTCATTCTGCTACTTTTATCAACACATTGAAATTTACTATCAAAGATACTGACTCTGACCCTTCGCATCCTGGTTTGCCAGATGAATATCAATT GGAAGACCTGGTCCTAGGTATCTCAGACCATATTCAACGTGTTTCAAAACAAAACTTTACAGTGGCCTGGCAGGAACTCAGCCCTGAAAGTGAAGTAGAAGAGACGTATATGCTGGTGAAGCACAAGACTATTAAAGAAACGATGCGTCAAAT ] [+] EMBL CD061114 [ ATGTCTATGTCTCGTGCGAGCCGGACGACTCCCTGTTTAATATTGTCTGCACAG TACCTTGC AAAAGCTTAAAGTATAATTCTCCCGCTGTGACGTATGTTCTAGTTGAGTTGCCGGAGGATCTGGAATGTCATTCTGCTACTTTTATCAACACATTGAAATTTACTATCAAAGATACTGACTCTGACCCTTCGGACCCTGGTTTGCCAGATGAATATCAATT GGAAGACCTGGTCCTAGGTATCTCAGACCATATTCAACGTGTTTCAAAACAAAACTTTACAGTGGCCTGGCAGGAACTCAGCCCTGAAAGTGAAGTAGAAGAGACGTATATGCTGGTGAAGCACAAGACTATTAAAGAAACGATGCGTCAAAT ] [-] EMBL CD061173 [ TGTCTATGTCTCGTGCGAGCCGGACGACTCCCTGTTTAATATTGTCTGCACAG TACCTTGC AAAAGCTTAAAGTATAATTCTCCCGCTGTGACGTATGTTCTAGTTGAGTTGCCGGAGGATCTGGAATGTCATTCTGCTACTTTTATCAACACATTGAAATTTACTATCAAAGATACTGACTCTGACCCTTCGGACCCTGGTTTGCCAGATGAATATCAATT GGAAGACCTGGTCCTAGGTATCTCAGACCATATTCAACGTGTTTCAAAACAAAACTTTACAGTGGCCTGGCAGGAACTCAGCCCTGAAAGTGAAGTAGAAGAGGCGTATATGCTGGTGAAGCACAAGACTATTAAAGAAACGATGCGTCAAATTATCGACACCTGCCTG] consensusID : consensus_11032#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 521 fasta sequence [TCGCATGGCTCCCGNGCCGCCATGGGGCGGCCGCGGNGAATTCGATTACTTCGACGGGCCTGGCAGGAACTCAGCCCTGAAAGTGAAGTAGAAGAGACGTATATGCTGGTGAAGCACAAGACTATTAAAGAAACGATGCGTCAAATTATCGAACACCTTGGACTTCAGCCTTGTGATCAAACTGATCATATGCCTCATGAAGGAAAGTCATCTCATCAGCTCCTTCTGTCCGGGGTATATCGTGGTGGATACCAAGTTTTGGCCTTATGTAAACTTGCTAAAGTATTGTCTGATGCATCCCCTCATTCAAACGAACAGGGTGTAACTTTCCAAATCACAGTACGTTCATCTGATCCCGTTGTTAGCCGAATAATAGCTGATGCCAGGGGTTGAGTTGTCATACTGAAAGACTTCCTTATTACTATATGACATATCCTACTTATGTATTGTATTAATTCTTTGTTTCTTACATTGGACTAATGGTAATCACTTTGTTTACAAATTTAATCAAACTACAAAGC] [+] EMBL CD162392 [TCGCATGGCTCCCGNGCCGCCATGGGGCGGCCGCGGNGAATTCGATTACTTCGACGGGCCTGGCAGGAACTCAGCCCTGAAAGTGAAGTAGAAGAGACGTATATGCTGGTGAAGCACAAGACTATTAAAGAAACGATGCGTCAAATTATCGAACACCTTGGACTTCAGCCTTGTGATCAAGCTGATCATATGCCTCATGAAGGAAAGTCATCTCATCAGCTCCTTCTGTCCGGGGTATATCGTGGTGGATACCAAGTTTTGGCCTTATGTAAACTTGCTAAAGTATTGTCTGATGCATCCCCTCATTCAAACGAACAGGGCGTAACTTTCCAAATCACAGTACGTTCATCTGATCCCGTTGTTAGCCGAATAATAGCTGATGCCAGG ] [+] EMBL CD158446 [ CCCTGAAAGTGAAGTAGAAGAGACGTATATGCTGGTGAAGCACAAGACTATTAAAGAAACGATGCGTCAAATTATCGAACACCTTGGACTTCAGCCTTGTGATCAAACTGATCATATGCCTCATGAAGGAAAGTCATCTCATCAGCTCCTTCTGTCCGGGGTATATCGTGGTGGATACCAAGTTTTGGCCTTATGTAAACTTGCTAAAGTATTGTCTGATGCATCCCCTCATTCAAACGAACAGGGCGTAACTTTCCAAATCACAGTACGTTCATCTGATCCCGTCGTTAGCCGAA ] [+] EMBL CD158401 [ CCCTGAAAGTGAAGTAGAAGAGACGTATATGCTGGTGAAGCACAAGACTATTAAAGAAACGATGCGTCAAATTATCGAACACCTTGGACTTCAGCCTTGTGATCAAACTGATCATATGCCTCATGAAGGAAAGTCATCTCATCAGCTCCTTCTGTCCGGGGTATATCGTGGTGGATACCAAGTTTTGGCCTTATGTAAACTTGCTAAAGTATTGTCTGATGCATCCCCTCATTCAAACGAACAGGGCGTAACTTTCCAAATCACAGTACGTTCATCTGATCCCGTTGTTAGCCGAA ] [+] EMBL CD120579 [ CCCTGAAAGTGCAGTAGAAGAGACGTATATGCTGGTGAAGCACAAGACTATTAAAGAAACGATGCGTCAAATTATCGAACACCTTGGACTTCAGCCTTGTGATCAAACTGATCATATGCCTCATGAAGGAAAGTCATCTCATCAGCTCCTTCTGTCCGGGGTATATCGTGGTGGATACCAAGTTTTGGCCTTATGTAAACTTGCTAAAGTATTGTCTGATGCATCCCCTCATTCAAACGAACAGGGTGTAACTTTCCAAATCACAGTACGTTCATCTGATCCCGTTGTTAGCCGAA ] [+] EMBL CD158340 [ CCCTGAAAGTGAAGTAGAAGAGACGTATATGCTGGTGAGGCACAAGACTATTAAAGAAACGATGCGTCAAATTATCGAACACCTTGGACTTCAGCCTTGTGATCAAACTGATCATATGCCTCATGAAGGAAAGTCATCTCATCAGCTCCTTCTGTCCGGGGTATATCGTGGTGGATACCAAGTTTTGGCCTTATGTAAACTTGCTAAAGTATTGTCTGATGCATCCCCTCATTCAAACGAACAGGGTGTAACTTTCCAAATCACAGTACGTTCATCTGATCCCGTTGTTAGCCGAA ] [+] EMBL CD158383 [ CCCTGAAAGTGAAGTAGAAGAGACGTATATGCTGGTGAAGCACAAGACTATTAAAGAAACGATGCGTCAAATTATCGAACACCTTGGACTTCAGCCTTGTGATCAAACTGATCATATGCCTCATGAAGGAAAGTCATCTCATCAGCTCCTTCTGTCCGGGGTATATCGTGGTGGATACCGAGTTTTGGCCTTATGTAAACTTGCTAAAGTATTGTCTGATGCATCCCCTCATTCAAACGAACAGGGCGTAACTTTCCAAATCACAGTACGTTCATCTGATCCCGCTGTTAGCCGAA ] [+] EMBL CD158428 [ CCCTGAAAGTGAAGTAGAAGAGACGTATATGCTGGTGAAGCACAAGACTATTAAAGAAACGATGCGTCAAATTATCGAACACCTTGGACTTCAGCCTTGTGATCAAACTGATCATATGCCTCATGAAGGAAAGTCATCTCATCAGCTCCTTCTGTCCGGGGTATATCGTGGTGGATACCAAGTTTTGGCCTTATGTAAACTTGCTAAAGTATTGTCTGATGCATCCCCTCATTCAAACGAACAGGGTGTAACTTTCCAAATCACAGTACGTTCATCTGATCCCGTTGTTAGCCGAA ] [+] EMBL CD158403 [ CCCTGAAAGTGAAGTAGAAGAGACGTATATGCTGGTGAAGCACAAGACTATTAAAGAAACGATGCGTCAAATTATCGAACACCTTGGACTTCAGCCTTGTGATCAAACTGATCATATGCCTCATGAAGGAAAGTCATCTCATCAGCTCCTTCTGTCCGGGGTATATCGTGGTGGATACCAAGTTTTGGCCTTATGTAAACTTGCTAAAGTATTGTCTGATGCATCCCCTCATTCAAACGAACAGGGTGTAGCTTTCCAAATCACAGTACGTTCATCTGATCCCGTTGTTAGCCGAA ] [-] EMBL CD114486 [ TTTGGCCTTATGTAAACTTGCTAAAGTATTGTCTGATGCATCCCCTCATTCAAACGAACAGGGTGTAACTTTCCAAATCACAGTACGTTCATCTGATCCCGTTGTTAGCCGAATAATAGCTGATGCCATCGGTTGAGTTGTCATACTGAAAGACTTCCTTATTACTATATGACATATCCTACTTATGTATTGTATTAATTCTTTGTTTCTTACATTGGACTAATGGTAATCACTTTGTTTACAAATTTAATCAAACTACAAAGC] consensusID : consensus_11032#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence [GGCTCCCGNGCCGCCATGGGGCGGCCGCGGGNAATTCGATTTAGGGCTCCAGTACTGATAGCCGATTTCAAATGTGTAAGAGTTTGGCTTAAGTAAGTTTCTTTATGATTACTATTGTTAGTATTACTATTGTTTACAAAATTGACTAGGTTAGAACAGTTGATTTGTGTTCCACCATTCATGAGTGGTACACCAATGATTCCATTAGATTGAATGTTTGATAAGGCTGAATGTGTTTTCTGTCCAGATGGTGAACACTGTAATAGTGTTACATTATGACAAATCTGAACCATTTCAGATGGAGATGCTTTAAATAGTTCTACATATCTATCACCTAAATAATCTTTATGACGTATTAATGCTTTAGTTGCTATATGATCATTACAAAATAGAATAAATGCATCACCAGTTGGTCGTTGATCTGGATAAACAACTAAATATACTCCTTGTTCATTGAACATAATTGGTGCTAGTACAGCATTGAAAAATTCAATAATTTGTTTT] [+] EMBL CD119688 [GGCTCCCGNGCCGCCATGGGGCGGCCGCGGGNAATTCGATTTAGGGCTCCAGTACTGATAGCCGATTTCAAATGTGTAAGAGTTTGGCTTAAGTAAGTTTCTTTATGATTACTATTGTTAGTATTACTATTGTTTACAAAATTGACTAGGTTAGAACAGTTGATTTGTGTTCCACCATTCATGAGTGGTACACCAATGATTCCATTAGATTGAATGTTTGATAAGGCTGAATGTGTTTTCTGTCCAGATGGTGAACACTGTAATAGTGTTACATTATGACAAATCTGAACCATTTCAGATGGAGATGCTTTAAATAGTTCTACATATCTATCACCTAAATAATCTTTATGACGTATTAATGCTTTAGTTGCTATATGATCATTACAAAATAGAATAAATGCATCACCAGTTGGTCGTTGATCTGGATAAACAACTAAATATACTCCTTGTTCATTGAACATAATTGGTGCTAGTACAGCATTGAAAAATTCAATAATTTGTTTT] consensusID : consensus_11032#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence [ACCCGGGTATGGCGCACCATTTTCAAATCTTGCCTCCCCGGTAGAATTAACTGAATCTGACACTGAATATGTAGTAACATGCATAAAACATTTATTCTCAAGGCATTTAGTCTTGCAGTTTGATTGTATCAATACAATGGCAGACCAAGTCTTGGAGAATGTCTATGTCTCGTGCGAGCCGGACGACTCCCTGTTTAATATTGTCTGCACAGTACCTTGCAAAAGCTTAAAGTATAATTCTCCCGCTGTGACGTATGTTCTAGTTGAGTTGCCGGAGGATCTGGAATGTCATTCTGCTACTTT] [+] EMBL CD126993 [ACCCGGGTATGGCGCACCATTTTCAAATCTTGCCTCCCCGGTAGAATTAACTGAATCTGACACTGAATATGTAGTAACATGCATAAAACATTTATTCTCAAGGCATTTAGTCTTGCAGTTTGATTGTATCAATACAATGGCAGACCAAGTCTTGGAGAATGTCTATGTCTCGTGCGAGCCGGACGACTCCCTGTTTAATATTGTCTGCACAGTACCTTGCAAAAGCTTAAAGTATAATTCTCCCGCTGTGACGTATGTTCTAGTTGAGTTGCCGGAGGATCTGGAATGTCATTCTGCTACTTT] consensusID : consensus_11032#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 289 fasta sequence [GCCTCCCGNGCCGCCATGGGGCGGCCGCGGGNAATTCGATTACTTCGACGGGCCTGGCACGAGCATTTGGCGCTGGGGGCGGCGATGGCCATTGAGCGCGCACTGCCGTTTGCGCGTTGAACCATCAATCCAGCTTCAGTCCCACCTGCGCGCGCTTGGGCAATTTGCTTACCACCAACTGGTGCGAGCGCTGCAACAGGCCACGCAGTTCCTCGGCGCCCAGCGGGTAGGGCGTGTTCATGATCACCCACTGCGCCCGCGCCAGGTACGGTGCGGGGTGGATGCCAGG] [+] EMBL CD162353 [GCCTCCCGNGCCGCCATGGGGCGGCCGCGGGNAATTCGATTACTTCGACGGGCCTGGCACGAGCATTTGGCGCTGGGGGCGGCGATGGCCATTGAGCGCGCACTGCCGTTTGCGCGTTGAACCATCAATCCAGCTTCAGTCCCACCTGCGCGCGCTTGGGCAATTTGCTTACCACCAACTGGTGCGAGCGCTGCAACAGGCCACGCAGTTCCTCGGCGCCCAGCGGGTAGGGCGTGTTCATGATCACCCACTGCGCCCGCGCCAGGTACGGTGCGGGGTGGATGCCAGG] [+] EMBL CD120595 [ GGCGCTGTGGGCGGCGATGGCCATTGAGCGCGCACTGCCGTTTGCGCGTTGAACCATCAATCCAGCTTCAGTCCCACCTGCGCGCGCTTGGGCAATTTGCTTACCACCAACTGGTGCGAGCGCTGCAACAGGCCACGCAGTTCCTCGGCGCCCAGCGGGTAGGGCGTGTTCATGATCACCCACTGCGCCCGCGCCAGGTACGGc ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11032#0 TCAATTATCAAACAAATTCCAGAAGCTAAAAGTATAGGTTTGTTACAATTGTGTGACTTC 60 consensus_11032#3 ------------------------------------------------------------ consensus_11032#1 ------------------------------------------------------------ consensus_11032#4 ------------------------------------------------------------ consensus_11032#2 ------------------------------------------------------------ consensus_11032#0 ATAGAGGATTGTGAACATGTTAAACTAACACAGCGTATACTCCATCTGTTAGGGCGGGAG 120 consensus_11032#3 ------------------------------------------------------------ consensus_11032#1 ------------------------------------------------------------ consensus_11032#4 ------------------------------------------------------------ consensus_11032#2 ------------------------------------------------------------ consensus_11032#0 GGACCTTACCTCAAACGTCCTCGTCAATTTACGCGTTACATTTACAATAGAGTTATGCTC 180 consensus_11032#3 ------------------------------------------------------------ consensus_11032#1 ------------------------------------------------------------ consensus_11032#4 ------------------------------------------------------------ consensus_11032#2 ------------------------------------------------------------ consensus_11032#0 GAGTCAGCTCCCATTAAGTGCACAGCTACAACAGCTCTGGCGAGATTTGCTGCACACAAT 240 consensus_11032#3 ------------------------------------------------------------ consensus_11032#1 ------------------------------------------------------------ consensus_11032#4 ------------------------------------------------------------ consensus_11032#2 ------------------------------------------------------------ consensus_11032#0 GAGGAATTACTTCCGAGTATTCTTGTACTTCTTAAACGAATTATGATTGATGAAGACGAT 300 consensus_11032#3 ------------------------------------------------------------ consensus_11032#1 ------------------------------------------------------------ consensus_11032#4 ------------------------------------------------------------ consensus_11032#2 ------------------------------------------------------------ consensus_11032#0 GAGGTTCGTGATCGCGCAGCTTTCTACCACTATATTTTATCAAATAACCAAGTAGCATTA 360 consensus_11032#3 ------------------------------------------------------------ consensus_11032#1 ------------------------------------------------------------ consensus_11032#4 ------------------------------------------------------------ consensus_11032#2 ------------------------------------------------------------ consensus_11032#0 AAATCTGCTTACCTTTTAAGTGAAGAAATGCATCTAAGTCCATCTGGTTTAGAGCGTGCT 420 consensus_11032#3 ------------------------------------------------------------ consensus_11032#1 ------------------------------------------------------------ consensus_11032#4 ------------------------------------------------------------ consensus_11032#2 ------------------------------------------------------------ consensus_11032#0 TTGTTGGATTATGTGCATAACTCCCACACAGTTGCTGGTAGTCCTTTCTCTTTGACGACA 480 consensus_11032#3 ------------------------------------------------------------ consensus_11032#1 ------------------------------------------------------------ consensus_11032#4 ------------------------------------------------------------ consensus_11032#2 ------------------------------------------------------------ consensus_11032#0 GTCCCAATAGCTGATATTGTTCAGCCAAATGACCTTAGTTCTGCCATTGAATCGGATGTT 540 consensus_11032#3 ------------------------------------------------------------ consensus_11032#1 ------------------------------------------------------------ consensus_11032#4 ------------------------------------------------------------ consensus_11032#2 ------------------------------------------------------------ consensus_11032#0 GTAAAGATTAAAGCTAAACCTAATGCGATGGCTGGTGAAGGTCGAAACACATCACTTGCT 600 consensus_11032#3 ------------------------------------------------------------ consensus_11032#1 ------------------------------------------------------------ consensus_11032#4 ------------------------------------------------------------ consensus_11032#2 ------------------------------------------------------------ consensus_11032#0 TCTCAGATGTCAGGAAAACGTATTCAAGATTCATTTGCTGAGCAGCTGGCATCTATACCC 660 consensus_11032#3 ------------------------------------------------------------ consensus_11032#1 ---------------------------------------------------TCGCATGGC 9 consensus_11032#4 ---------------------------------------------------------GCC 3 consensus_11032#2 ---------------------------------------------------------GGC 3 consensus_11032#0 GAATTTTCTGATCTTG-GCTCTATATTCAAATCTT-CCTCCCCGGTAGAATTAACTGAAT 718 consensus_11032#3 ----ACCCGGGTATGGCGCACCATTTTCAAATCTTGCCTCCCCGGTAGAATTAACTGAAT 56 consensus_11032#1 TCCCGNGCCGCCATGGGGCGGCCGCGGNGAATTCGATTACTTCGACGGGCCTGGCAGGAA 69 consensus_11032#4 TCCCGNGCCGCCATGGGGCGGCCGCGGGNAATTCGATTACTTCGACGGGCCTGGCACGAG 63 consensus_11032#2 TCCCGNGCCGCCATGGGGCGGCCGCGGGNAATTCGATTT-----AGGGCTCCAGTACTGA 58 * * * * ** *** * consensus_11032#0 C--TGA-CACTGAATATGTAGTAACATGCATAAAACATTTATTCTCAAGGCATTTAGTCT 775 consensus_11032#3 C--TGA-CACTGAATATGTAGTAACATGCATAAAACATTTATTCTCAAGGCATTTAGTCT 113 consensus_11032#1 C--TCAGCCCTGAAAGTGAAGTAGAA-----GAGACGTATATGCTGGTGAAGCACAAGAC 122 consensus_11032#4 CATTTGGCGCTGGGGGCGGCGATGGCCATTGAGCGCGCAC-TGCCGTTTGCGCGTTGAAC 122 consensus_11032#2 TAGCCGATTTCAAATGTGTAAGAGTTTGGCTTAAGTAAGT---TTCTTTATGATTACTAT 115 * consensus_11032#0 TGCAGTTTGATTGTATCAATACAATGGCAGACCAAGTCTTGGAGAATGTCTATGTC-TCG 834 consensus_11032#3 TGCAGTTTGATTGTATCAATACAATGGCAGACCAAGTCTTGGAGAATGTCTATGTC-TCG 172 consensus_11032#1 TATTAAAGAAACGATGCGTCAAATTATCGAAC---ACCTTGGACTTCAGCCTTGTGATCA 179 consensus_11032#4 CATCAATCCAGC-TTCAGTCCCACCTGCGCGC----GCTTGGGCAATTTGCTTACCACCA 177 consensus_11032#2 TGTTAGTATTACTATTGTTTACAAAATTGACT--AGGTTAGAACAGTTGATTTGTGTTCC 173 * * * * * consensus_11032#0 TGCGAGC-CGGACGACTCCCTGTTTAATATTGTCTGCACAGTACCTTGCAAAAGCTTAAA 893 consensus_11032#3 TGCGAGC-CGGACGACTCCCTGTTTAATATTGTCTGCACAGTACCTTGCAAAAGCTTAAA 231 consensus_11032#1 AACTGAT-CATATGCCTCATGAAGGAAAGTCATCTCATCAGCTCCTTCT----GTCCGGG 234 consensus_11032#4 ACTGGTG-CGAGCGCTGCAACAGGCCACG-CAGTTCCTCGGCGCCCAGC----GGGTAGG 231 consensus_11032#2 ACCATTCATGAGTGGTACACCAA-TGATTCCATTAGATTGAATGTTTGATAAGGCTGAAT 232 * * * * consensus_11032#0 GTATAATTC-TCCCGCTGTGACGTAT--GTTCTA-GTTGAGTTGCCGGAGGATC-TGGAA 948 consensus_11032#3 GTATAATTC-TCCCGCTGTGACGTAT--GTTCTA-GTTGAGTTGCCGGAGGATC-TGGAA 286 consensus_11032#1 GTATATCGT-GGTGGATACCAAGTTTTGGCCTTATGTAAACTTGCTAAAGTATTGTCTGA 293 consensus_11032#4 GCGTGTTCA-TGATCACCCACTGCGCCCGCGCCAGGTACGGT-GCGGGGTGGATGCCAGG 289 consensus_11032#2 GTGTTTTCTGTCCAGATGGTGAACACTGTAATAGTGTTACATTATGACAAATCTGAACCA 292 * * ** * consensus_11032#0 TGTCATTCTGCTACTTTTATCAACACATTGAAATTTACTATCAAAGATACTGACTCTGAC 1008 consensus_11032#3 TGTCATTCTGCTACTTT------------------------------------------- 303 consensus_11032#1 TG-CATCCCCTCATTCAAACGAACAGGGTGTAACTTTCCA--AATCACAGTACGTTCATC 350 consensus_11032#4 ------------------------------------------------------------ consensus_11032#2 TTTCAGATGGAGATGCTTTAAATAGTTCTACATATCTATCACCTAAATAATCTTTATGAC 352 consensus_11032#0 CCTTCGGATCCTGGTTTGCCAGATGAATATCAATTGGAAGACCTGGTCCTAGGTATCTCA 1068 consensus_11032#3 ------------------------------------------------------------ consensus_11032#1 TGATC---CCGTTGTTAGCCGAATAATAGCTGATGCCAGGGGTTGAGTTGTCATACTGAA 407 consensus_11032#4 ------------------------------------------------------------ consensus_11032#2 GTATTAATGCTTTAGTTGCTATATGATCATTACAAAATAGAATAAATGCATCAC-CAGTT 411 consensus_11032#0 GACCATATTCAACGTGTTTCAAAACAAAACTTTACAGTGGCCTGGCAGGAACTCAGCCCT 1128 consensus_11032#3 ------------------------------------------------------------ consensus_11032#1 AGACTTCCTTATTACTATATGACATATCCTACTTATGTATTGTATTAATTCTTTGTTTCT 467 consensus_11032#4 ------------------------------------------------------------ consensus_11032#2 GGTCGTTGATCTGGATAAACAACTAAATATACTCCTTGTTCATTGAACATAATTGGTGCT 471 consensus_11032#0 GAAAGTGAAGTAGAAGAGACGTATATGCTGGTGAAGC--ACAAGACTATTAAAGAAACGA 1186 consensus_11032#3 ------------------------------------------------------------ consensus_11032#1 TACATTGGACTAATGGTAATCACTTTGTTTACAAATTTAATCAAACTACAAAGC------ 521 consensus_11032#4 ------------------------------------------------------------ consensus_11032#2 AGTACAGCATTGAAAAATTCAATAATTTGTTTT--------------------------- 504 consensus_11032#0 TGCGTCAAATTATCGACACCTGCCTG 1212 consensus_11032#3 -------------------------- consensus_11032#1 -------------------------- consensus_11032#4 -------------------------- consensus_11032#2 -------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||