These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11040#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 24 consensus length = 1243 fasta sequence [AAGATTTATATTTCAGCCAATACCGAATATATATATGCATATTGTGAAGAGATAAAATGTAATAAATAATGACTAAATAGTAC-ATTGATCTTTTGCAATCAGTTGACAGAATTTGTTTCA-GTGTTTAAATAGTAAAGTTTAAGCGGAATTTAAAAAAATTAAT-ACGCTAATTGATTG-T-T-TTTTTT-GTTGCATTGAATAAATGTAAAATCATCTATTGGTACACCAGGGATTGTGTTTAATATTAACACAATTTTATTGTTTTCAATCTTCATCGTCTTCATTATCACTGT-CAGAATTA-TCATCCTTATCGGATTCTT-CTTTATTATCTTCAGTTTCCGATTCGCTTTCACA-CTCTGTTTCATCTGATACCTTTGTTTTGCACTTTTTATTCTTTTTAGTAGAAATATCTAAACCATTCAATACTGTTCCATTAATAATTGGTTGTTTAGTGCTTGTGCCTGTTTCATTTTCACCTTCAGTACCTATGTCAATAATGGAAACACTTTGTGTTTCATTGTTAGTA-GACTCGGTTTCTGAC-TCAGTGACGTTGTTTGTCTCAGTTTGTGTGATGGTTTCGGAAGGTTCTGTTGTTGTGTCAGGG-ACACTTTTATTCATGTTAGTGTACACGTTGCAAAGGCTAACAATTAATTTTGTCAAATTATTAGGATATCTAGCTGTTTCCGTGACTGTTTTTGCTTCAATATCAACACTTTCTGAAGTTGACTCTACTGGAGATTCATCGGTACTACTTTCGTCATCGTTATGGATCAGTGTAGAAGGGGTAATATCTGAGTTAACAGTGCTTTCTGTTTGATTTTCTAAGTCTTCTGAAGTTGGACCAGTCGACTGTGTGTCTGTGTAAGTACCGAACACTTCACAAACGTCACCAACAGCTTCCA-TCAAACGAGGAAGTGTATTAGCGTCTTTAGGGGTTTCTGTGTGGTTATCAAGATTTTCTGAGGTTGAATCAGATATAACTGTTTCTGTATGAACAACATCTGTATGGTTTTCACCACTTGTCACAGTAGAAGTGCTTTCTGTATGATTTTCTAAGCCCTCTGAAGTTATTTGAACAACACTATCGTTCTGAAGAGTAACAGTTTCTGTAGTCAGAGTGGTGAGTAAATCAGTGTTGTCAGTGCTATCTGATTCGTTGTCGGAAGTTTCTATTGTAGATTCCGGGGGATTTGAGGTTAGGTTGGCCACGTGTTTCAATGTTAGCAACGCCAGCCACTGTTGTCGG] [+] EMBL AI976814 [AAGATTTATATTTCAGCCAATACCGAATATATATATGCATATTGTGAAGAGATAAAATGTAATAAATAATGACTAAATAGTAC ATTGATCTTTTGCAATCAGTTGACAGAATTTGTTTCA GTGTTTAAATAGTAAAGTTTAAGCGGAATTTAAAAAAATTAAT ACGCTAATTGATTGTT T TTTTTT GTTGCATTGAATAAATGTAAAATCATCTATTGGTACACCAGGGATTGTGTTTAATATTAACACAATTTTATTGTTTTCAATCTTCATCGGCTTCATTATCACTGG CAGAATTA TCATCCTTATCGGATTCTT CTTTATTATCTTCAGNTTCCGATTCGCTTTCACA CTCTGTTTCATATGATACCTTTGTTTTGCACTTTTTATTCTTTTTAGTAGAAATATCTAAACCATTCAATACTGTTCCAT ] [+] EMBL AW017125 [AAGATTTATATTTCAGCCAATACCGAATATATATATGCATATTGTGAAGAGATAAAATGTAATAAATAATGACTAAATAGTAC ATTGATCTTTTGCAATCAGTTGACAGAATTTGTTTCA GTGTTTAAATAGTAAAGTTTAAGCGGAATTTAAAAAAATTAAT ACGCTAATTGATTG T T TTTTTT GTTGCATTGAATAAATGTAAAATCATCTATTGGTACACCAGGGATTGTGTTTAATATTAACACAATTTTATTGTTTTCAATCTTCATCGTCTTCATTATCACTGT CAGAATTA TCATCCTTATCGGATTCTT CTTTATTATCTTCAGTTTCCGATTCGCTTTCACA CTCTGTTTCATCTGATACCTTTGTTTTGCACTTTTTATTCTTTTTAGTAGAAATATCTAAACCATTCAATACTGTTCCATTAATAATTGGTTGTTTAGTGCTTGTGCCTGTTTCATTTTCACCTTTAGTACC ] [+] EMBL AI026174 [AAGATTTATATTTCAGCCAATACCGAATATATATATGCATATTGTGAAGAGATAAAATGTAATAAATAATGACTAAATAGTAC ATTGATCTTTTGCAATCAGTTGACAGAATTTGTTT G GGGTTTAAATAGTAAAGTTTAAGCGGAATTTAAAAAAATTAAT ACGCTAATGGATTG T T TTTTTTGGTGGCAATAAATAAATGTAAAATCATCTATTGGa ] [-] EMBL AI882639 [ AGATTTATATTTCAGCCAATACCGAATATATATATGCATATTGTGAAGAGATAAAATGTAATAAATAATGACTAAATAGTAC ATTGATCTTTTGCAATCAGTTGACAGAATTTGTTTCA GTGTTTAAATAGTAAAGTTTAAGCGGAATTTAAAAAAATTAAT ACGCTAATTGATTG T TGTTTTTT GTTGCAT ] [-] EMBL AI882657 [ AGATTTATATTTCAGCCAATACCGAATATATATATGCATATTGTGAAGAGATAAAATGTAATAAATAATGACTAAATAGTAC ATTGATCTTTTGCAATCAGTTGACAGAATTTGTTTCA GTGTTTAAATAGTAAAGTTTAAGCGGAATTTAAAAAAATTAAT ACGCTAATTGATTG T TGTTTTTT GTTGCAT ] [+] EMBL AI740286 [ GATTTATATTTCAGCCAATACCGAATATATATATGCATATTGTGAAGAGATAAAATGTAATAAATAATGACTAAATAGTACTATTGATCTTTTGCAATCAGTTGACAGAATTTGTTTCACGTGTTTAAATAGTAAAGTTTAAGCGGAATTTAAAAAAATTAAT ACGCTAATTGATTG Tagctttg ] [+] EMBL AI740400 [ TATATTTCAGCCAATACCGAATATATATATGCATATTGTGAAGAGATAAAATGTAATAAATAATGACTAAATAGTAC ATTGATCTTTTGCAATCAGTTGACAGAATTTGTTTCA GTGTTTAAATAGTAAAGTTTAAGCGGAATTTAAAAAAATTAAT ACGCTAATTGATTG TCT TTTTTT GTTGCATTGAATAAATGTAAAATCATCTATTGGTACACCAGGGATTGTGTTTAATATTAACACAATTTTATTGTTTTCAATCTTCATCGTCTTCATTATCACTGTCCAGAATTA TCATCCTTAGGGGATTCTTCCTTTATTATCTTCAGTTTCCGATTCGCTTTCACA CTCTGTTTCACCTGATACCTTTGTTTTGCACTTTTTATTCTTTTT ] [+] EMBL AI967917 [ TTCAGCCAATACTGAATATATATATGCATATTGTGAAGAGATAAAATGTAATAAATAATGACTAAATAGTAC ATTGATCTTTTGCAATCAGTTGACAGAATTTGTTTCA GTGTTTAAATAGT AAGTTTAAGCGGAATTT AAAAAATTAAT ACGCTAATTGATTG T T TTTTTT GGTGCATTGAATAAATGTAAAATCATCTATTGGTACACCAGGGATTGTGTTTAATATTAACCCCATTTTATTGGTTTCAATCTTCATCGGCTTCATTAT ACTGT CAGAATTA TCCTYCTTATCGGGTTC T CCTTATTA CTTCAG TTCCGATTCGCTTTCACA CTCTGTTTCA CTGAAACCTTTGTTTTGCAC TTTTA TCTCTTTAG AGAAAT TCTAA CACT TACACTGTgca ] [-] EMBL AI764849 [ CTAAATAGTAC ATTGATCTTTNNCAATCAGTTGACAGAATTTGTTCCA GTGTTTAAATAGTAAAGTTTAAGCGGAATTTAAAAAAATTAAT ACGCTAATTNATTGTT T TTTTTT GTNNCATTGAATAAATGTAAAATCATCTATTTGTACACCBNNGATTGTGTTTAATATTAACACAATTTTATTGTTTTCAATCTTAATCGTCTTCATTATCACTGT CAGAATTACGCATCC ] [-] EMBL AI111029 [ TTTAAAAAAATTAATAACGCTAATTGATTG T T TTTTTT GTTGCATTGAATAAANGTAAAATCATCTATTGGNACACCAGGGATTGTGTTTAATATTAACACAATTTTATTGNTTTCAATCTTCATCGTCTTCANAATCACTGT CAGAATTA TCATCCTTATCGGATTCTT CTTTATTATCTTCAGTTTCCGATTCGCTTTCACA CTCTGTTTCATCTGATACCTTTGTTTTGCACTTTTTATTCTTTTTAGTAGAAATATCTAAACCATTCAATACTGTTCCATTAATAATTGGTTGTTTAGTGCTTGTGCCTGTTTCATTTTCACCTTCAGTACCTATGTCAATAATGGAAACACTTTGTGTTTCATTGTTAGTA GACTCGGTTTCTGAC TCAGTGACGTTGTTTGTCTCAGTTTGTGTGATGGTTTCGGAAGGTTCTGTTGTTGTGTCAGGG ACACTT ] [-] EMBL BE431256 [ AATTTTATTGTTTACAATCTTCATCGTCTTCATTATCACTGT CAGAA TA TCATCCTTATCGGATTCTT CTTTATTATCTTCAGTTTCCGATTCGCTTTCACACCTCTGTTTCATCTGATACCTTTGTTTTGCAC TTTTATTCTTTATAGTCG AATATCTAACCCATTCAATACTGTTCCATTAATAATTGGTTGTTTAGTGCTTGTGCCTGTTTCATTTTCACCTTCAGTACCTATGTCAATAATGGAAACACTTTGTGTTTCATTGTTAGTA GACTCGGTTTCTGAC TCAGTGACGTTGTTTGTCTCAGTTTGTGTGATGGTTTCGGAAGGTTCTGTTGTTGTGTCAGG ] [-] EMBL AI740293 [ CACTGT GAGAAATA TCAT CTTATCGGA TCTT C TTATTATCTCCAGTTTCCGATTCGTTTTCACA CTCTG TTCATC GATA CTTTGTTTTGCACTTTTTATTCTTTTTGGTGGAAATATCTAAACCATTCAATACTGTTCCATTAATAATTGGTTGTTTAGTGCTTGTGCCTGTTTCATTTTCACCTTCAGTACCTATGTCAATAATGGAAACACTTTGTGTTTCATTGTTAGTA GACTCGGTTTCTGAC TCAGTGACGTTGTTTGTCTCAGTTTGTGTGATGGTTTCGGAA ] [-] EMBL AA958287 [ CAC TTTTA TC TTTTAGTAGAAATATCTAAACCA TCAATACTG TCCATTAAAAATTGGTTG TTAGTGCTTGTGCCTGTTTCATTTTCACCTTCAGTACCTATGTCAATAATGGAAACACTTTGTGTTTCATTGTTAGTA GACTCGGTTTCTGAC TCAGTGACGTTGTTTGTCTCAGTTTGTGTGATGGTTTCGGAAGGTTCTGTTGTTGTGTCAGGG ACACTTTTATTCATGTTAGTGTACACGTTGCAAAGGCTAACAATTAATTTTGTCAAATTATTAGGATATCTAGCTGTTTCCGTGACTGTTTTTGCTTCAATATCAACACTTTCTGAAG TGACTCTACTGGAGATTCATCGGTACTACTTTCG ] [-] EMBL AI374475 [ gACTTTGTGTTTCATTGGTGGTAGGACTCGGGTTCTGACTTCAGTGCCGTTGTTTGTCTCAGTTTGTGTGATGGTTTCGGAAGGTTCTGTTGTTGTGTCAGGG ACACTTTTGTTCATGTTAGTGTACACG ] [+] EMBL CD138342 [ TTGTTTGTCTCAGTTTGTGTGATGGTTTCGGAAGGTTCTGTTGTTGTGTCAGGG ACACTTTTATTCATGTTAGTGTACACGTTGCAAAGGCTAACAATTAATTTTGTCAAATTATTAGGATATCTAGCTGTTCCCGTGACTGTTTTTGCTTCAATATCAACACTTTCTGAAGTTGACTCTACTGGAGATTCATCGGTACTACTTTCGTCATCGTTATGGATCAGTGTAGAAGGGGTAATATCTGAGTTAACAGTGCTTTCTGTTTGATTTTCTAAGTCTTCTGAAGTTGGACCAGTCGACTGTGTGTCTGTGTAAGTACCGAACACTTCACAAACGTCACCAACAGCTTCCc cat ] [-] EMBL CD124678 [ TGTTTGTCTCAGTTTGTGTGATGGTTTCGGAAGGTTCTGTTGTTGTGTCAGGG ACACTTTTATTCATGTTAGTGTACACGTTGCAAAGGCTAACAATTAATTTTGTCAAATTATTAGGATATCTAGCTGTTTCCGTGACTGTTTTTGCTTCAATATCAACACTTTCTGAAGTTGACTCTACTGGAGATTCATCGGTACTACTTTCGTCATCGTTATGGATCAGTGTAGAAGGGGTAATATCTGAGTTAACAGTGCTTTCTGTTTGATTTTCTAAGTCTTCTGAAGTTGGACCAGTCGACTGTGTGTCTGTGTAAGTACCGAACACTTCACAAACGTCACCAACAGCTTCCA TCAAACGAGGAAGTGTATTAGCGTCTTTAGGGGTTTCTGTGTGGTTATCAAGATTTTCTGAGGTTGAATCAGATATAACTGTTTCTGTATGAACAAC ] [+] EMBL CD121816 [ TGTCAGGGNACACTTTTATTCATGTTAGTGTACACGTTGCAAAGGCTAACAATTAATTTTGTCAAATTATTAGGATATCTAGCTGTTTCCGTGACTGTTTTTGCTTCAATATCAACACTTTCTGAAGTTGACTCTACTGGAGATTCATCGGTACTACTTTCGTCATCGTTATGGATCAGTGTAGAAGGGGTAATATCTGAGTTAACAGTGCTTTCTGTTTGATTTTCTAAGTCTTCTGAAGTTGGACCAGTCGACTGTGTGTCTGTGTAAGTACCGAACACTTCACAAACGTCACCAACAGCTTCCA TCAAACGAGGAAGTGTATTAGCGTCTTTAGGGGTTTCTGTGTGGTTATCAAGATTTTCTGAGGTCGAATCAGATAT ] [-] EMBL CD069193 [ AAGGCTAACAATTAATTTTGTCAAATTATTAGGGTATCTAGCTGTTTCCGTGACTGTTTTTGCTTCAATATCAACACTTTCTGAAGTTGACTCTACTGGAGATTCATCGGTACTACTTTCGTCATCGTTATGGATCAGTGTAGAAGGGGTAATATCTGAGTTAACAGTGCTTTCTGTGTGATTTTCTAAGTCTTCTGAAGTTGGACCAGTCGACTGTGTGTCTGTGTAAGTACCGAACACTTCACATACGTCACCGACAGCTTCCA TCAAACGAGGAAGTGTATTAGCGTCTTTAGGGGTTTCTGTGTGGTTATCAAGATTTTCTGAGGTTGAATCAGATATAACTGTTTCTGTATGAACAACATCTGTATGGTTTTCACCACTTGTCACAGTAGAAGTGCTCTCTGTATGATTTTCTAAGCCCTCTGAAGTTATTTGAACAGCACTATCGTTCTGAAGAGTAACAGTTTCTGTAGTCAGAGTGGTGAGTAAATCAGTGTTGTCAGTGCTATCTGgggcat ] [-] EMBL CD069339 [ TGTTTTTGCTTCAATATCAACACTTTCTGAAGTTGACTCTACTGGAGATTCATCGGTACTACTTTCGTCATCGTTATGGATCAGTGTAGAAGGGGTAATATCTGAGTTAACAGTGCTTTCTGTTTGATTTTCTAAGTCTTCTGAAGTTGGACCAGTCGACTGTGTGTCTGTGTAAGTACCGAACACTTCACAAACGTCACCAACAGCTTCCACTCAAACGAGGAAGTGTATTAGCGTCTTTAGGGGTTTCTGTGTGGTTATCAAGATTT ] [+] EMBL CD155944 [ ATCGGTACTACTTTCGTCATCGTTATGGATCAGTGTAGAAGGGGTAATATCTGAGTTAACAGTGCTTTCTGTTTGATTTTCTAAGTCTTCTGAAGTTGGACCAGTCGACTGTGTGTCTGTGTAAGTACCGAACACTTCACAAACGTCACCAACAGCTTCCA TCAAACGAGGAAGTGTATTAGCGTCTTTAGGGGTTTCTGCGTGGTTATCAAGATTTTCTGAGGTTGAATCAGATATAACTGTTTCTGTATGAACAACATCTGTATGGTTTTCACCACTTGTCACAGTAGAAGTGCTTTCTGTATGATTTTCTAAGCCCTCCGCAGTTATTTTAACAACACTATCGTTCTGAAGAGTAACAGTTTCTGTAGTCAGAGTGGTGAGTAAATCAGTGTTGTCAGTGCTATCTGATTCGTTGTCGGA ] [+] EMBL CD135189 [ ATCGGTACTACTTTCGTCATCGTTATGGATCAGTGTAGAAGGGGTAATATCTGAGTTAACAGTGCTTTCTGTTTGATTTTCTAAGTCTTCTGAAGTTGGACCAGTCGACTGTGTGTCTCTGTAAGTACCGAACACTTCACAAACGTCACCAACAGCTTCCA TCAAACGAGGAAGTGTATTAGCGTCTTTAGGGGTTTCTGTGTGGTTATCAAGATTTTCTGAGGTTGAATCAGATATAACTGTTTCTGTATGAACAACATCTGTATGGTTTTCACCACTTGTCACAGTAGAAGTGCTTTCTGTATGATTTTCTAAGCCCTCTGAAGTTATTTGAACAACACTATCGTTCTGAAGAGTAACAGTTTCTGTAGTCAGAGTGGTGAGTAAATCAGTGTTGTCAGTGCTATCTGATTCGTTGTCGGA ] [-] EMBL CD119886 [ TCGGTACTACTTTCGTCATCGTTATGGATCAGTGTAGAAGGGGTAATATCTGAGTTAACAGTGCTTTCTGTTTGATTTTCTAAGTCTTCTGAAGTTGGACCAGTCGACTGTGTGTCTGTGTAAGTACCGAACACTTCACAAACGTCACCAACAGCTTCCA TCAAACGAGGAAGTGTATTAGCGTCTTTAGGGGTTTCTGTGTGGTTATCAAGATTTTCTGAGGTTGAATCAGATATAACTGTTTCTGTATGAACAACATCTGTATGGTTTTCACCACTTGTCACAGTAGAAGTGCTTTCTGTATGATTTTATAAGCCCTCTGAAGTTATTTGAACAACACTATCGTTCTGAAGAGTAACAGTTTCTGTAGCCAGAGTGGTGAGTAAATCAGTGTTGTCAGTGCTATCTGATTCGTTGTCGGAAGTTTCTATTGTAGA ] [-] EMBL CD115696 [ TGCTTTCTGTTTGATTTTCTAAGTCTTCTGAAGTTGGACCAGTCGACTGTGTGTCTGTGTAAGTACCGAACACTTCACAAACGTCACCAACAGCTTCCA TCAAACGAGGAAGTGTATTAGCGTCTTTAGGGGTTTCTGTGTGGTTATCAAGATTTTCTGAGGTTGAATCAGATATAACTGTTTCTGTATGAACAACATCTGTATGGTTTTCACCACTTGTCACAGTAGAAGTGCTTTCTGTATGATTTTCTAAGCCCTCTGAAGTTATTTGAACAACACTATCGTTCTGAAGAGTAACAGTTTCTGTAGTCAGAGTGGTGAGTAAATCAGTGTTGTCAGTGCTATCTGATTCGTTGTCGGAAGTTTCTATTGTAGATTCCGGGGGATTTGAGGTTAGGTTGGCCACGTGTTTCAATGTTAGCAACGCCAGCCACTGTTGTCGG] [-] EMBL CD119657 [ AAGTGTATTAGCGTCTTTAGGGGTTTCTGTGTGGTTATCAAGATTTTCTAAGGTTGAATCAGATATAACTGTTTCTGTATGAACAACATCTGTATGGTTTTCACCACTTGTCACAGTAGAAGTGCTTTCTGTATGATTTTCTAAGCCCTCTGAAGTTATTTGAACAACACTATCGTTCTGAAGAGTAACAGTTTCTGTAGTCAGAGTGGTGAGTAAATCAGTGTTGTCAGTGCCATCTGATTCGTTGTCGGAAGTTTCTATTGAAGAT ] consensusID : consensus_11040#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 515 fasta sequence [TGGCTAATCTGACATTGACTTTTGCAATCAGTGGCAGGATTTGTCCGTGTTTAATAGTAAAGTTAAGCCGGATTTAAAAAATTATACGCTAATGAGTGGTTTTTTTTGTGCATTGAATAAATGTAAAATCATCTAATTGGTACAACCGGGATTGTGTTTAATATTAACACAATTTTATTGTTTTCAATCTTCATCGTCTTCATTATCACTGTCAGAATTATCATCCTTATCGGATTCTTCTTTATTATCTTCAGTTTCCGATTCGCTTTCACACTCTGTTTCATCTGATACCTTTGTTTTGCACTTTTTATTCTTTTTAGTAGAAATATCTAACCCATTCAATACTGTTCCATTAATAATTGGTTGTTTAGTGCTTGNGCCTGTTTCATTTTCACCTTCAGNACCTATGTCAATAATGGAAACACTTTGNGTTTCATTGTTAGTAGACTCGGTTTCTGACTCAGTCAGTTTGTGTGATGGTTTCGGAAGGNTCTGTTGTTGTGTCAGGGACACTT] [-] EMBL AI618802 [TGGCTAATCTGACATTGACTTTTGCAATCAGTGGCAGGATTTGTCCGTGTTTAATAGTAAAGTTAAGCCGGATTTAAAAAATTATACGCTAATGAGTGGTTTTTTTTGTGCATTGAATAAATGTAAAATCATCTAATTGGTACAACCGGGATTGTGTTTAATATTAACACAATTTTATTGTTTTCAATCTTCATCGTCTTCATTATCACTGTCAGAATTATCATCCTTATCGGATTCTTCTTTATTATCTTCAGTTTCCGATTCGCTTTCACACTCTGTTTCATCTGATACCTTTGTTTTGCACTTTTTATTCTTTTTAGTAGAAATATCTAACCCATTCAA ] [-] EMBL AI111017 [ TCCGATTCGCTTTCACACTCTGTTTCATCTGATACCTTNGTTTTGCACTTTTNATTCTTTTTAGTAGAAATATCTAAACCATTCAATACTGTTCCATTAATAATTGGTTGTTTAGTGCTTGNGCCTGTTTCATTTTCACCTTCAGNACCTATGTCAATAATGGAAACACTTTGNGTTTCATTGTTAGTAGACTCGGTTTCTGACTCAGTCAGTTTGTGTGATGGTTTCGGAAGGNTCTGTTGTTGTGTCAGGGACACTT] consensusID : consensus_11040#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence [TATTCAGCCACTCCCGATCGATATATGCATATGTGCGGGGTGAGATGTGTTAATAATGACTAAATAGTACATGATCTTTGCAATCAGTTGACAGAATTTGTTTCAGTGTTTAAATAGTAAAGTTTAGCGGATTTAAAAAAATAATACGCTAATGAATGTTTTTTTTGTTGCACTGAATAAATGTAAAATCATCTATTGTACACCCAGGGATTGTGTTTAATATTAACACAATTTTATTGTTTTCAATCTTCATCGTCTTCATTATCACTGTCAGAATTATCATCCTTATCGGATTCTTCTTTATTATCTTCAGTTTCCGATTCGCTTTCACACTCTGTTTCATCTGATACCTTTGTTTGCACTTATATTCTTTTAGGTGGACATATCTGAACC] [-] EMBL AI639552 [TATTCAGCCACTCCCGATCGATATATGCATATGTGCGGGGTGAGATGTGTTAATAATGACTAAATAGTACATGATCTTTGCAATCAGTTGACAGAATTTGTTTCAGTGTTTAAATAGTAAAGTTTAGCGGATTTAAAAAAATAATACGCTAATGAATGTTTTTTTTGTTGCACTGAATAAATGTAAAATCATCTATTGTACACCCAGGGATTGTGTTTAATATTAACACAATTTTATTGTTTTCAATCTTCATCGTCTTCATTATCACTGTCAGAATTATCATCCTTATCGGATTCTTCTTTATTATCTTCAGTTTCCGATTCGCTTTCACACTCTGTTTCATCTGATACCTTTGTTTGCACTTATATTCTTTTAGGTGGACATATCTGAACC] consensusID : consensus_11040#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 212 fasta sequence [TGAACAACATCTGTATGGTTTTCACCACTTGTCACAGTAGAAGTGCTTTCTGTATGATTTTCTAAGCCCTCTGAAGTTATTTGAACAACACTATCGTTCTGAAGAGTAACAGTTTCTGTAGTCAGAGTGGTGAGTAAATCAGTGTTGTCAGTGCTATCTGATTCGTTGTCGGAAGTTTCTATTGTAGATTCCGGGGGATGTCGTGTCTGGGT] [-] EMBL CD077814 [TGAACAACATCTGTATGGTTTTCACCACTTGTCACAGTAGAAGTGCTTTCTGTATGATTTTCTAAGCCCTCTGAAGTTATTTGAACAACACTATCGTTCTGAAGAGTAACAGTTTCTGTAGTCAGAGTGGTGAGTAAATCAGTGTTGTCAGTGCTATCTGATTCGTTGTCGGAAGTTTCTATTGTAGATTCCGGGGGATGTCGTGTCTGGGT] consensusID : consensus_11040#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 141 fasta sequence [AAAATTTATATTTCAGCCAATACCGAATATATATGTGCATATTGCGAAGAGATAAAATGTAATAAATAATGACTAAATAGTACATTGATTTTTTGCAATCAATTGACAGAATCTGTTTCTGGGTTTAAATAGTCAAGATTA] [+] EMBL AI977436 [AAAATTTATATTTCAGCCAATACCGAATATATATGTGCATATTGCGAAGAGATAAAATGTAATAAATAATGACTAAATAGTACATTGATTTTTTGCAATCAATTGACAGAATCTGTTTCTGGGTTTAAATAGTCAAGATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11040#0 AAGATTTATATTTCAGCCAATACCGAATATATATATGCATATTGTGAAGAGATAAAATGT 60 consensus_11040#3 ------------------------------------------------------------ consensus_11040#1 ------------------------------------------------------------ consensus_11040#2 ------------------------------------------------------------ consensus_11040#4 ------------------------------------------------------------ consensus_11040#0 AATAAATAATGACTAAATAGTACATTGATCTTTTGCAATCAGTTGACAGAATTTGTTTCA 120 consensus_11040#3 ------------------------------------------------------------ consensus_11040#1 ------------------------------------------------------------ consensus_11040#2 ------------------------------------------------------------ consensus_11040#4 ------------------------------------------------------------ consensus_11040#0 GTGTTTAAATAGTAAAGTTTAAGCGGAATTTAAAAAAATTAATACGCTAATTGATTGTTT 180 consensus_11040#3 ------------------------------------------------------------ consensus_11040#1 ------------------------------------------------------------ consensus_11040#2 ------------------------------------------------------------ consensus_11040#4 ------------------------------------------------------------ consensus_11040#0 TTTTTGTTGCATTGAATAAATGTAAAATCATCTATTGGTACACCAGGGATTGTGTTTAAT 240 consensus_11040#3 ------------------------------------------------------------ consensus_11040#1 ------------------------------------------------------------ consensus_11040#2 ------------------------------------------------------------ consensus_11040#4 ------------------------------------------------------------ consensus_11040#0 ATTAACACAATTTTATTGTTTTCAATCTTCATCGTCTTCATTATCACTGTCAGAATTATC 300 consensus_11040#3 ------------------------------------------------------------ consensus_11040#1 ------------------------------------------------------------ consensus_11040#2 ------------------------------------------------------------ consensus_11040#4 ------------------------------------------------------------ consensus_11040#0 ATCCTTATCGGATTCTTCTTTATTATCTTCAGTTTCCGATTCGCTTTCACACTCTGTTTC 360 consensus_11040#3 ------------------------------------------------------------ consensus_11040#1 ------------------------------------------------------------ consensus_11040#2 ------------------------------------------------------------ consensus_11040#4 ------------------------------------------------------------ consensus_11040#0 ATCTGATACCTTTGTTTTGCACTTTTTATTCTTTTTAGTAGAAATATCTAAACCATTCAA 420 consensus_11040#3 ------------------------------------------------------------ consensus_11040#1 ------------------------------------------------------------ consensus_11040#2 ------------------------------------------------------------ consensus_11040#4 ------------------------------------------------------------ consensus_11040#0 TACTGTTCCATTAATAATTGGTTGTTTAGTGCTTGTGCCTGTTTCATTTTCACCTTCAGT 480 consensus_11040#3 ------------------------------------------------------------ consensus_11040#1 ------------------------------------------------------------ consensus_11040#2 ------------------------------------------------------------ consensus_11040#4 ------------------------------------------------------------ consensus_11040#0 ACCTATGTCAATAATGGAAACACTTTGTGTTTCATTGTTAGTAGACTCGGTTTCTGACTC 540 consensus_11040#3 ------------------------------------------------------------ consensus_11040#1 ------------------------------------------------------------ consensus_11040#2 ------------------------------------------------------------ consensus_11040#4 ------------------------------------------------------------ consensus_11040#0 AGTGACGTTGTTTGTCTCAGTTTGTGTGATGGTTTCGGAAGGTTCTGTTGTTGTGTCAGG 600 consensus_11040#3 ------------------------------------------------------------ consensus_11040#1 ------------------------------------------------------------ consensus_11040#2 ------------------------------------------------------------ consensus_11040#4 ------------------------------------------------------------ consensus_11040#0 GACACTTTTATTCATGTTAGTGTACACGTTGCAAAGGCTAACAATTAATTTTGTCAAATT 660 consensus_11040#3 ------------------------------------------------------------ consensus_11040#1 ------------------------------------------------------------ consensus_11040#2 ------------------------------------------------------------ consensus_11040#4 ------------------------------------------------------------ consensus_11040#0 ATTAGGATATCTAGCTGTTTCCGTGACTGTTTTTGCTTCAATATCAACACTTTCTGAAGT 720 consensus_11040#3 ------------------------------------------------------------ consensus_11040#1 ---------------------------------------------TGGCTAATCTGACAT 15 consensus_11040#2 ------------------------------------------------------------ consensus_11040#4 ------------------------------------------------------------ consensus_11040#0 TGACTCTACTGGAGATTCATCGGTACTACTTTCGTCATCGTTATGGATCAGTGTAGAAGG 780 consensus_11040#3 ------------------------------------------------------------ consensus_11040#1 TGACTTTTGCAATCAGTGGCAGGATTTGTCCGTGTTTAATAGTAAAGTTAAGCCGGATTT 75 consensus_11040#2 ------------------------------------------------------------ consensus_11040#4 ------------------------------------------------------------ consensus_11040#0 GGTAATATCTGAGTTAACAGTGCTTTCTGTTTGATTTTCTAAGTCTTCTGAAGTTGGACC 840 consensus_11040#3 ------------------------------------------------------------ consensus_11040#1 AAAAAATTATACGCTAATGAGTGGTTTTTTTTGTGCATTGAATAAATGTAAAATCATCTA 135 consensus_11040#2 ------------------------------------------------------------ consensus_11040#4 ------------------------------------------------------------ consensus_11040#0 AGTCGACTGTGTGTCTGTGTAAGTACCGAACACTTCACAAACGTCACCAACAGCTTCCAT 900 consensus_11040#3 ------------------------------------------------------------ consensus_11040#1 ATTGGTACAACCGGGATTGTGTTTAATATTAACACAATTTTATTGTTTTCAATCTTCATC 195 consensus_11040#2 ------------------------------------------------------------ consensus_11040#4 ------------------------------------------------------------ consensus_11040#0 CAAACGAGGAAGTGTATTAGCGTCTTTAGGGGTTTCTGTGTGGTTATCAAGATTTTCTGA 960 consensus_11040#3 ------------------------------------------------------------ consensus_11040#1 GTCTTCATTATCACTGTCAGAATTATCATCCTTATCGGATTCTTCTTTATTATCTTCAGT 255 consensus_11040#2 ------------------------------------------------------------ consensus_11040#4 ------------------------------------------------------------ consensus_11040#0 GGTTGAATCAGATATAACTGTTTCTGTATGAACAACATCTGTATGGTTTTCACCACTTGT 1020 consensus_11040#3 ----------------------------TGAACAACATCTGTATGGTTTTCACCACTTGT 32 consensus_11040#1 TTCCGATTCGCTTTCACACTCTGTTTCATCTGATACCTTTGTTTTGCACTTTTTATTCTT 315 consensus_11040#2 -----------------------------------------TAT---T-CAGCCACTCCC 15 consensus_11040#4 ---------------------------------AAAATTTATAT---TTCAGCCAATACC 24 * * * * consensus_11040#0 CACAGTAGAAGTGCTTTCTGTATGATTTTCTAAGCCCTCTGAAGTTATTTGAACAACACT 1080 consensus_11040#3 CACAGTAGAAGTGCTTTCTGTATGATTTTCTAAGCCCTCTGAAGTTATTTGAACAACACT 92 consensus_11040#1 TTTAGTAGAAATATCTAACCCATTCAATACTGTTCCATTAATAATTGGTTGTTTAGTGCT 375 consensus_11040#2 GATCG-ATATATGCATAT-GTGCGGGG-TGAGATGTGTTAA-TAATGACTAAATAGTACA 71 consensus_11040#4 GAATATATATGTGCATATTGCGAAGAGATAAAATGTAATAAATAATGACTAAATAGTACA 84 * * * * * * * * consensus_11040#0 ATCGTTCTGAAGAGTAACAGTTTCTGTAGTCAGAGTGGTGAGTAAATCAGTGTTG---TC 1137 consensus_11040#3 ATCGTTCTGAAGAGTAACAGTTTCTGTAGTCAGAGTGGTGAGTAAATCAGTGTTG---TC 149 consensus_11040#1 TGNGCCTGTTTCATTTTCACCTTCAGNACCTATGTCAATAATGGAAACACTTTGNGTTTC 435 consensus_11040#2 TGA--TCTTTGCAAT--CAGTTGACAGAATTTGTTTCAGTGTTTAAATAGTAAAGT--TT 125 consensus_11040#4 TTGATTTTTTGCAAT--CAATTGACAGAATCTGTTTCTGGGTTTAAATAGTCAAGA--TT 140 * * ** * * ** * * * consensus_11040#0 AGTGCTATCTGATTCGTTGTCGGA-------AGTTTCTATTGTAGATTCCGGGGGAT--- 1187 consensus_11040#3 AGTGCTATCTGATTCGTTGTCGGA-------AGTTTCTATTGTAGATTCCGGGGGAT--- 199 consensus_11040#1 ATTGTTAGTAGACTCGGTTTCTGACTCAGTCAGTTTGTGTGATGGTTTCGGAAGGNTCTG 495 consensus_11040#2 AGCGGATTTAAAAAAATAATACGCTAATGAATGTTTTTTTTGTTGCACTGAATAAATGTA 185 consensus_11040#4 A----------------------------------------------------------- 141 * consensus_11040#0 --TTGAGGTTAGGTTGGCCACGTGTTTCAATGTTAGCAACGCCAGCCACTGTTGTCGG-- 1243 consensus_11040#3 --GTCGTGTCTGGGT--------------------------------------------- 212 consensus_11040#1 TTGTTGTGTCAGGGACACTT---------------------------------------- 515 consensus_11040#2 AAATCATCTATTGTACACCCAGGGATTGTGTTTAATATTAACACAATTTTATTGTTTTCA 245 consensus_11040#4 ------------------------------------------------------------ consensus_11040#0 ------------------------------------------------------------ consensus_11040#3 ------------------------------------------------------------ consensus_11040#1 ------------------------------------------------------------ consensus_11040#2 ATCTTCATCGTCTTCATTATCACTGTCAGAATTATCATCCTTATCGGATTCTTCTTTATT 305 consensus_11040#4 ------------------------------------------------------------ consensus_11040#0 ------------------------------------------------------------ consensus_11040#3 ------------------------------------------------------------ consensus_11040#1 ------------------------------------------------------------ consensus_11040#2 ATCTTCAGTTTCCGATTCGCTTTCACACTCTGTTTCATCTGATACCTTTGTTTGCACTTA 365 consensus_11040#4 ------------------------------------------------------------ consensus_11040#0 ---------------------------- consensus_11040#3 ---------------------------- consensus_11040#1 ---------------------------- consensus_11040#2 TATTCTTTTAGGTGGACATATCTGAACC 393 consensus_11040#4 ---------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||