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Schistosoma mansoni
cluster # 11040 cluster # 11040       Sequences # 29       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11040#0 length = 1243 sequences # 24  
consensus_11040#1 length = 515 sequences # 2  
consensus_11040#2 length = 393 sequences # 1  
consensus_11040#3 length = 212 sequences # 1  
consensus_11040#4 length = 141 sequences # 1  

consensusID : consensus_11040#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 24
consensus length = 1243
fasta sequence
                              [AAGATTTATATTTCAGCCAATACCGAATATATATATGCATATTGTGAAGAGATAAAATGTAATAAATAATGACTAAATAGTAC-ATTGATCTTTTGCAATCAGTTGACAGAATTTGTTTCA-GTGTTTAAATAGTAAAGTTTAAGCGGAATTTAAAAAAATTAAT-ACGCTAATTGATTG-T-T-TTTTTT-GTTGCATTGAATAAATGTAAAATCATCTATTGGTACACCAGGGATTGTGTTTAATATTAACACAATTTTATTGTTTTCAATCTTCATCGTCTTCATTATCACTGT-CAGAATTA-TCATCCTTATCGGATTCTT-CTTTATTATCTTCAGTTTCCGATTCGCTTTCACA-CTCTGTTTCATCTGATACCTTTGTTTTGCACTTTTTATTCTTTTTAGTAGAAATATCTAAACCATTCAATACTGTTCCATTAATAATTGGTTGTTTAGTGCTTGTGCCTGTTTCATTTTCACCTTCAGTACCTATGTCAATAATGGAAACACTTTGTGTTTCATTGTTAGTA-GACTCGGTTTCTGAC-TCAGTGACGTTGTTTGTCTCAGTTTGTGTGATGGTTTCGGAAGGTTCTGTTGTTGTGTCAGGG-ACACTTTTATTCATGTTAGTGTACACGTTGCAAAGGCTAACAATTAATTTTGTCAAATTATTAGGATATCTAGCTGTTTCCGTGACTGTTTTTGCTTCAATATCAACACTTTCTGAAGTTGACTCTACTGGAGATTCATCGGTACTACTTTCGTCATCGTTATGGATCAGTGTAGAAGGGGTAATATCTGAGTTAACAGTGCTTTCTGTTTGATTTTCTAAGTCTTCTGAAGTTGGACCAGTCGACTGTGTGTCTGTGTAAGTACCGAACACTTCACAAACGTCACCAACAGCTTCCA-TCAAACGAGGAAGTGTATTAGCGTCTTTAGGGGTTTCTGTGTGGTTATCAAGATTTTCTGAGGTTGAATCAGATATAACTGTTTCTGTATGAACAACATCTGTATGGTTTTCACCACTTGTCACAGTAGAAGTGCTTTCTGTATGATTTTCTAAGCCCTCTGAAGTTATTTGAACAACACTATCGTTCTGAAGAGTAACAGTTTCTGTAGTCAGAGTGGTGAGTAAATCAGTGTTGTCAGTGCTATCTGATTCGTTGTCGGAAGTTTCTATTGTAGATTCCGGGGGATTTGAGGTTAGGTTGGCCACGTGTTTCAATGTTAGCAACGCCAGCCACTGTTGTCGG]

[+] EMBL AI976814             [AAGATTTATATTTCAGCCAATACCGAATATATATATGCATATTGTGAAGAGATAAAATGTAATAAATAATGACTAAATAGTAC ATTGATCTTTTGCAATCAGTTGACAGAATTTGTTTCA GTGTTTAAATAGTAAAGTTTAAGCGGAATTTAAAAAAATTAAT ACGCTAATTGATTGTT T TTTTTT GTTGCATTGAATAAATGTAAAATCATCTATTGGTACACCAGGGATTGTGTTTAATATTAACACAATTTTATTGTTTTCAATCTTCATCGGCTTCATTATCACTGG CAGAATTA TCATCCTTATCGGATTCTT CTTTATTATCTTCAGNTTCCGATTCGCTTTCACA CTCTGTTTCATATGATACCTTTGTTTTGCACTTTTTATTCTTTTTAGTAGAAATATCTAAACCATTCAATACTGTTCCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AW017125             [AAGATTTATATTTCAGCCAATACCGAATATATATATGCATATTGTGAAGAGATAAAATGTAATAAATAATGACTAAATAGTAC ATTGATCTTTTGCAATCAGTTGACAGAATTTGTTTCA GTGTTTAAATAGTAAAGTTTAAGCGGAATTTAAAAAAATTAAT ACGCTAATTGATTG T T TTTTTT GTTGCATTGAATAAATGTAAAATCATCTATTGGTACACCAGGGATTGTGTTTAATATTAACACAATTTTATTGTTTTCAATCTTCATCGTCTTCATTATCACTGT CAGAATTA TCATCCTTATCGGATTCTT CTTTATTATCTTCAGTTTCCGATTCGCTTTCACA CTCTGTTTCATCTGATACCTTTGTTTTGCACTTTTTATTCTTTTTAGTAGAAATATCTAAACCATTCAATACTGTTCCATTAATAATTGGTTGTTTAGTGCTTGTGCCTGTTTCATTTTCACCTTTAGTACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AI026174             [AAGATTTATATTTCAGCCAATACCGAATATATATATGCATATTGTGAAGAGATAAAATGTAATAAATAATGACTAAATAGTAC ATTGATCTTTTGCAATCAGTTGACAGAATTTGTTT G GGGTTTAAATAGTAAAGTTTAAGCGGAATTTAAAAAAATTAAT ACGCTAATGGATTG T T TTTTTTGGTGGCAATAAATAAATGTAAAATCATCTATTGGa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL AI882639             [ AGATTTATATTTCAGCCAATACCGAATATATATATGCATATTGTGAAGAGATAAAATGTAATAAATAATGACTAAATAGTAC ATTGATCTTTTGCAATCAGTTGACAGAATTTGTTTCA GTGTTTAAATAGTAAAGTTTAAGCGGAATTTAAAAAAATTAAT ACGCTAATTGATTG T TGTTTTTT GTTGCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL AI882657             [ AGATTTATATTTCAGCCAATACCGAATATATATATGCATATTGTGAAGAGATAAAATGTAATAAATAATGACTAAATAGTAC ATTGATCTTTTGCAATCAGTTGACAGAATTTGTTTCA GTGTTTAAATAGTAAAGTTTAAGCGGAATTTAAAAAAATTAAT ACGCTAATTGATTG T TGTTTTTT GTTGCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AI740286             [  GATTTATATTTCAGCCAATACCGAATATATATATGCATATTGTGAAGAGATAAAATGTAATAAATAATGACTAAATAGTACTATTGATCTTTTGCAATCAGTTGACAGAATTTGTTTCACGTGTTTAAATAGTAAAGTTTAAGCGGAATTTAAAAAAATTAAT ACGCTAATTGATTG Tagctttg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AI740400             [      TATATTTCAGCCAATACCGAATATATATATGCATATTGTGAAGAGATAAAATGTAATAAATAATGACTAAATAGTAC ATTGATCTTTTGCAATCAGTTGACAGAATTTGTTTCA GTGTTTAAATAGTAAAGTTTAAGCGGAATTTAAAAAAATTAAT ACGCTAATTGATTG TCT TTTTTT GTTGCATTGAATAAATGTAAAATCATCTATTGGTACACCAGGGATTGTGTTTAATATTAACACAATTTTATTGTTTTCAATCTTCATCGTCTTCATTATCACTGTCCAGAATTA TCATCCTTAGGGGATTCTTCCTTTATTATCTTCAGTTTCCGATTCGCTTTCACA CTCTGTTTCACCTGATACCTTTGTTTTGCACTTTTTATTCTTTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AI967917             [           TTCAGCCAATACTGAATATATATATGCATATTGTGAAGAGATAAAATGTAATAAATAATGACTAAATAGTAC ATTGATCTTTTGCAATCAGTTGACAGAATTTGTTTCA GTGTTTAAATAGT AAGTTTAAGCGGAATTT AAAAAATTAAT ACGCTAATTGATTG T T TTTTTT GGTGCATTGAATAAATGTAAAATCATCTATTGGTACACCAGGGATTGTGTTTAATATTAACCCCATTTTATTGGTTTCAATCTTCATCGGCTTCATTAT ACTGT CAGAATTA TCCTYCTTATCGGGTTC T CCTTATTA CTTCAG TTCCGATTCGCTTTCACA CTCTGTTTCA CTGAAACCTTTGTTTTGCAC TTTTA TCTCTTTAG AGAAAT TCTAA  CACT TACACTGTgca                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL AI764849             [                                                                        CTAAATAGTAC ATTGATCTTTNNCAATCAGTTGACAGAATTTGTTCCA GTGTTTAAATAGTAAAGTTTAAGCGGAATTTAAAAAAATTAAT ACGCTAATTNATTGTT T TTTTTT GTNNCATTGAATAAATGTAAAATCATCTATTTGTACACCBNNGATTGTGTTTAATATTAACACAATTTTATTGTTTTCAATCTTAATCGTCTTCATTATCACTGT CAGAATTACGCATCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL AI111029             [                                                                                                                                                      TTTAAAAAAATTAATAACGCTAATTGATTG T T TTTTTT GTTGCATTGAATAAANGTAAAATCATCTATTGGNACACCAGGGATTGTGTTTAATATTAACACAATTTTATTGNTTTCAATCTTCATCGTCTTCANAATCACTGT CAGAATTA TCATCCTTATCGGATTCTT CTTTATTATCTTCAGTTTCCGATTCGCTTTCACA CTCTGTTTCATCTGATACCTTTGTTTTGCACTTTTTATTCTTTTTAGTAGAAATATCTAAACCATTCAATACTGTTCCATTAATAATTGGTTGTTTAGTGCTTGTGCCTGTTTCATTTTCACCTTCAGTACCTATGTCAATAATGGAAACACTTTGTGTTTCATTGTTAGTA GACTCGGTTTCTGAC TCAGTGACGTTGTTTGTCTCAGTTTGTGTGATGGTTTCGGAAGGTTCTGTTGTTGTGTCAGGG ACACTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL BE431256             [                                                                                                                                                                                                                                                               AATTTTATTGTTTACAATCTTCATCGTCTTCATTATCACTGT CAGAA TA TCATCCTTATCGGATTCTT CTTTATTATCTTCAGTTTCCGATTCGCTTTCACACCTCTGTTTCATCTGATACCTTTGTTTTGCAC TTTTATTCTTTATAGTCG AATATCTAACCCATTCAATACTGTTCCATTAATAATTGGTTGTTTAGTGCTTGTGCCTGTTTCATTTTCACCTTCAGTACCTATGTCAATAATGGAAACACTTTGTGTTTCATTGTTAGTA GACTCGGTTTCTGAC TCAGTGACGTTGTTTGTCTCAGTTTGTGTGATGGTTTCGGAAGGTTCTGTTGTTGTGTCAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL AI740293             [                                                                                                                                                                                                                                                                                                   CACTGT GAGAAATA TCAT CTTATCGGA TCTT C TTATTATCTCCAGTTTCCGATTCGTTTTCACA CTCTG TTCATC GATA CTTTGTTTTGCACTTTTTATTCTTTTTGGTGGAAATATCTAAACCATTCAATACTGTTCCATTAATAATTGGTTGTTTAGTGCTTGTGCCTGTTTCATTTTCACCTTCAGTACCTATGTCAATAATGGAAACACTTTGTGTTTCATTGTTAGTA GACTCGGTTTCTGAC TCAGTGACGTTGTTTGTCTCAGTTTGTGTGATGGTTTCGGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL AA958287             [                                                                                                                                                                                                                                                                                                                                                                                                      CAC TTTTA TC TTTTAGTAGAAATATCTAAACCA TCAATACTG TCCATTAAAAATTGGTTG TTAGTGCTTGTGCCTGTTTCATTTTCACCTTCAGTACCTATGTCAATAATGGAAACACTTTGTGTTTCATTGTTAGTA GACTCGGTTTCTGAC TCAGTGACGTTGTTTGTCTCAGTTTGTGTGATGGTTTCGGAAGGTTCTGTTGTTGTGTCAGGG ACACTTTTATTCATGTTAGTGTACACGTTGCAAAGGCTAACAATTAATTTTGTCAAATTATTAGGATATCTAGCTGTTTCCGTGACTGTTTTTGCTTCAATATCAACACTTTCTGAAG TGACTCTACTGGAGATTCATCGGTACTACTTTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL AI374475             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               gACTTTGTGTTTCATTGGTGGTAGGACTCGGGTTCTGACTTCAGTGCCGTTGTTTGTCTCAGTTTGTGTGATGGTTTCGGAAGGTTCTGTTGTTGTGTCAGGG ACACTTTTGTTCATGTTAGTGTACACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD138342             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TTGTTTGTCTCAGTTTGTGTGATGGTTTCGGAAGGTTCTGTTGTTGTGTCAGGG ACACTTTTATTCATGTTAGTGTACACGTTGCAAAGGCTAACAATTAATTTTGTCAAATTATTAGGATATCTAGCTGTTCCCGTGACTGTTTTTGCTTCAATATCAACACTTTCTGAAGTTGACTCTACTGGAGATTCATCGGTACTACTTTCGTCATCGTTATGGATCAGTGTAGAAGGGGTAATATCTGAGTTAACAGTGCTTTCTGTTTGATTTTCTAAGTCTTCTGAAGTTGGACCAGTCGACTGTGTGTCTGTGTAAGTACCGAACACTTCACAAACGTCACCAACAGCTTCCc cat                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD124678             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TGTTTGTCTCAGTTTGTGTGATGGTTTCGGAAGGTTCTGTTGTTGTGTCAGGG ACACTTTTATTCATGTTAGTGTACACGTTGCAAAGGCTAACAATTAATTTTGTCAAATTATTAGGATATCTAGCTGTTTCCGTGACTGTTTTTGCTTCAATATCAACACTTTCTGAAGTTGACTCTACTGGAGATTCATCGGTACTACTTTCGTCATCGTTATGGATCAGTGTAGAAGGGGTAATATCTGAGTTAACAGTGCTTTCTGTTTGATTTTCTAAGTCTTCTGAAGTTGGACCAGTCGACTGTGTGTCTGTGTAAGTACCGAACACTTCACAAACGTCACCAACAGCTTCCA TCAAACGAGGAAGTGTATTAGCGTCTTTAGGGGTTTCTGTGTGGTTATCAAGATTTTCTGAGGTTGAATCAGATATAACTGTTTCTGTATGAACAAC                                                                                                                                                                                                                                                       ]
[+] EMBL CD121816             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGTCAGGGNACACTTTTATTCATGTTAGTGTACACGTTGCAAAGGCTAACAATTAATTTTGTCAAATTATTAGGATATCTAGCTGTTTCCGTGACTGTTTTTGCTTCAATATCAACACTTTCTGAAGTTGACTCTACTGGAGATTCATCGGTACTACTTTCGTCATCGTTATGGATCAGTGTAGAAGGGGTAATATCTGAGTTAACAGTGCTTTCTGTTTGATTTTCTAAGTCTTCTGAAGTTGGACCAGTCGACTGTGTGTCTGTGTAAGTACCGAACACTTCACAAACGTCACCAACAGCTTCCA TCAAACGAGGAAGTGTATTAGCGTCTTTAGGGGTTTCTGTGTGGTTATCAAGATTTTCTGAGGTCGAATCAGATAT                                                                                                                                                                                                                                                                            ]
[-] EMBL CD069193             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AAGGCTAACAATTAATTTTGTCAAATTATTAGGGTATCTAGCTGTTTCCGTGACTGTTTTTGCTTCAATATCAACACTTTCTGAAGTTGACTCTACTGGAGATTCATCGGTACTACTTTCGTCATCGTTATGGATCAGTGTAGAAGGGGTAATATCTGAGTTAACAGTGCTTTCTGTGTGATTTTCTAAGTCTTCTGAAGTTGGACCAGTCGACTGTGTGTCTGTGTAAGTACCGAACACTTCACATACGTCACCGACAGCTTCCA TCAAACGAGGAAGTGTATTAGCGTCTTTAGGGGTTTCTGTGTGGTTATCAAGATTTTCTGAGGTTGAATCAGATATAACTGTTTCTGTATGAACAACATCTGTATGGTTTTCACCACTTGTCACAGTAGAAGTGCTCTCTGTATGATTTTCTAAGCCCTCTGAAGTTATTTGAACAGCACTATCGTTCTGAAGAGTAACAGTTTCTGTAGTCAGAGTGGTGAGTAAATCAGTGTTGTCAGTGCTATCTGgggcat                                                                                         ]
[-] EMBL CD069339             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TGTTTTTGCTTCAATATCAACACTTTCTGAAGTTGACTCTACTGGAGATTCATCGGTACTACTTTCGTCATCGTTATGGATCAGTGTAGAAGGGGTAATATCTGAGTTAACAGTGCTTTCTGTTTGATTTTCTAAGTCTTCTGAAGTTGGACCAGTCGACTGTGTGTCTGTGTAAGTACCGAACACTTCACAAACGTCACCAACAGCTTCCACTCAAACGAGGAAGTGTATTAGCGTCTTTAGGGGTTTCTGTGTGGTTATCAAGATTT                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD155944             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ATCGGTACTACTTTCGTCATCGTTATGGATCAGTGTAGAAGGGGTAATATCTGAGTTAACAGTGCTTTCTGTTTGATTTTCTAAGTCTTCTGAAGTTGGACCAGTCGACTGTGTGTCTGTGTAAGTACCGAACACTTCACAAACGTCACCAACAGCTTCCA TCAAACGAGGAAGTGTATTAGCGTCTTTAGGGGTTTCTGCGTGGTTATCAAGATTTTCTGAGGTTGAATCAGATATAACTGTTTCTGTATGAACAACATCTGTATGGTTTTCACCACTTGTCACAGTAGAAGTGCTTTCTGTATGATTTTCTAAGCCCTCCGCAGTTATTTTAACAACACTATCGTTCTGAAGAGTAACAGTTTCTGTAGTCAGAGTGGTGAGTAAATCAGTGTTGTCAGTGCTATCTGATTCGTTGTCGGA                                                                                  ]
[+] EMBL CD135189             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ATCGGTACTACTTTCGTCATCGTTATGGATCAGTGTAGAAGGGGTAATATCTGAGTTAACAGTGCTTTCTGTTTGATTTTCTAAGTCTTCTGAAGTTGGACCAGTCGACTGTGTGTCTCTGTAAGTACCGAACACTTCACAAACGTCACCAACAGCTTCCA TCAAACGAGGAAGTGTATTAGCGTCTTTAGGGGTTTCTGTGTGGTTATCAAGATTTTCTGAGGTTGAATCAGATATAACTGTTTCTGTATGAACAACATCTGTATGGTTTTCACCACTTGTCACAGTAGAAGTGCTTTCTGTATGATTTTCTAAGCCCTCTGAAGTTATTTGAACAACACTATCGTTCTGAAGAGTAACAGTTTCTGTAGTCAGAGTGGTGAGTAAATCAGTGTTGTCAGTGCTATCTGATTCGTTGTCGGA                                                                                  ]
[-] EMBL CD119886             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TCGGTACTACTTTCGTCATCGTTATGGATCAGTGTAGAAGGGGTAATATCTGAGTTAACAGTGCTTTCTGTTTGATTTTCTAAGTCTTCTGAAGTTGGACCAGTCGACTGTGTGTCTGTGTAAGTACCGAACACTTCACAAACGTCACCAACAGCTTCCA TCAAACGAGGAAGTGTATTAGCGTCTTTAGGGGTTTCTGTGTGGTTATCAAGATTTTCTGAGGTTGAATCAGATATAACTGTTTCTGTATGAACAACATCTGTATGGTTTTCACCACTTGTCACAGTAGAAGTGCTTTCTGTATGATTTTATAAGCCCTCTGAAGTTATTTGAACAACACTATCGTTCTGAAGAGTAACAGTTTCTGTAGCCAGAGTGGTGAGTAAATCAGTGTTGTCAGTGCTATCTGATTCGTTGTCGGAAGTTTCTATTGTAGA                                                                   ]
[-] EMBL CD115696             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGCTTTCTGTTTGATTTTCTAAGTCTTCTGAAGTTGGACCAGTCGACTGTGTGTCTGTGTAAGTACCGAACACTTCACAAACGTCACCAACAGCTTCCA TCAAACGAGGAAGTGTATTAGCGTCTTTAGGGGTTTCTGTGTGGTTATCAAGATTTTCTGAGGTTGAATCAGATATAACTGTTTCTGTATGAACAACATCTGTATGGTTTTCACCACTTGTCACAGTAGAAGTGCTTTCTGTATGATTTTCTAAGCCCTCTGAAGTTATTTGAACAACACTATCGTTCTGAAGAGTAACAGTTTCTGTAGTCAGAGTGGTGAGTAAATCAGTGTTGTCAGTGCTATCTGATTCGTTGTCGGAAGTTTCTATTGTAGATTCCGGGGGATTTGAGGTTAGGTTGGCCACGTGTTTCAATGTTAGCAACGCCAGCCACTGTTGTCGG]
[-] EMBL CD119657             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AAGTGTATTAGCGTCTTTAGGGGTTTCTGTGTGGTTATCAAGATTTTCTAAGGTTGAATCAGATATAACTGTTTCTGTATGAACAACATCTGTATGGTTTTCACCACTTGTCACAGTAGAAGTGCTTTCTGTATGATTTTCTAAGCCCTCTGAAGTTATTTGAACAACACTATCGTTCTGAAGAGTAACAGTTTCTGTAGTCAGAGTGGTGAGTAAATCAGTGTTGTCAGTGCCATCTGATTCGTTGTCGGAAGTTTCTATTGAAGAT                                                                  ]


>consensus_11040#0 AAGATTTATATTTCAGCCAATACCGAATATATATATGCATATTGTGAAGAGATAAAATGT AATAAATAATGACTAAATAGTACATTGATCTTTTGCAATCAGTTGACAGAATTTGTTTCA GTGTTTAAATAGTAAAGTTTAAGCGGAATTTAAAAAAATTAATACGCTAATTGATTGTTT TTTTTGTTGCATTGAATAAATGTAAAATCATCTATTGGTACACCAGGGATTGTGTTTAAT ATTAACACAATTTTATTGTTTTCAATCTTCATCGTCTTCATTATCACTGTCAGAATTATC ATCCTTATCGGATTCTTCTTTATTATCTTCAGTTTCCGATTCGCTTTCACACTCTGTTTC ATCTGATACCTTTGTTTTGCACTTTTTATTCTTTTTAGTAGAAATATCTAAACCATTCAA TACTGTTCCATTAATAATTGGTTGTTTAGTGCTTGTGCCTGTTTCATTTTCACCTTCAGT ACCTATGTCAATAATGGAAACACTTTGTGTTTCATTGTTAGTAGACTCGGTTTCTGACTC AGTGACGTTGTTTGTCTCAGTTTGTGTGATGGTTTCGGAAGGTTCTGTTGTTGTGTCAGG GACACTTTTATTCATGTTAGTGTACACGTTGCAAAGGCTAACAATTAATTTTGTCAAATT ATTAGGATATCTAGCTGTTTCCGTGACTGTTTTTGCTTCAATATCAACACTTTCTGAAGT TGACTCTACTGGAGATTCATCGGTACTACTTTCGTCATCGTTATGGATCAGTGTAGAAGG GGTAATATCTGAGTTAACAGTGCTTTCTGTTTGATTTTCTAAGTCTTCTGAAGTTGGACC AGTCGACTGTGTGTCTGTGTAAGTACCGAACACTTCACAAACGTCACCAACAGCTTCCAT CAAACGAGGAAGTGTATTAGCGTCTTTAGGGGTTTCTGTGTGGTTATCAAGATTTTCTGA GGTTGAATCAGATATAACTGTTTCTGTATGAACAACATCTGTATGGTTTTCACCACTTGT CACAGTAGAAGTGCTTTCTGTATGATTTTCTAAGCCCTCTGAAGTTATTTGAACAACACT ATCGTTCTGAAGAGTAACAGTTTCTGTAGTCAGAGTGGTGAGTAAATCAGTGTTGTCAGT GCTATCTGATTCGTTGTCGGAAGTTTCTATTGTAGATTCCGGGGGATTTGAGGTTAGGTT GGCCACGTGTTTCAATGTTAGCAACGCCAGCCACTGTTGTCGG



consensusID : consensus_11040#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 515
fasta sequence
                              [TGGCTAATCTGACATTGACTTTTGCAATCAGTGGCAGGATTTGTCCGTGTTTAATAGTAAAGTTAAGCCGGATTTAAAAAATTATACGCTAATGAGTGGTTTTTTTTGTGCATTGAATAAATGTAAAATCATCTAATTGGTACAACCGGGATTGTGTTTAATATTAACACAATTTTATTGTTTTCAATCTTCATCGTCTTCATTATCACTGTCAGAATTATCATCCTTATCGGATTCTTCTTTATTATCTTCAGTTTCCGATTCGCTTTCACACTCTGTTTCATCTGATACCTTTGTTTTGCACTTTTTATTCTTTTTAGTAGAAATATCTAACCCATTCAATACTGTTCCATTAATAATTGGTTGTTTAGTGCTTGNGCCTGTTTCATTTTCACCTTCAGNACCTATGTCAATAATGGAAACACTTTGNGTTTCATTGTTAGTAGACTCGGTTTCTGACTCAGTCAGTTTGTGTGATGGTTTCGGAAGGNTCTGTTGTTGTGTCAGGGACACTT]

[-] EMBL AI618802             [TGGCTAATCTGACATTGACTTTTGCAATCAGTGGCAGGATTTGTCCGTGTTTAATAGTAAAGTTAAGCCGGATTTAAAAAATTATACGCTAATGAGTGGTTTTTTTTGTGCATTGAATAAATGTAAAATCATCTAATTGGTACAACCGGGATTGTGTTTAATATTAACACAATTTTATTGTTTTCAATCTTCATCGTCTTCATTATCACTGTCAGAATTATCATCCTTATCGGATTCTTCTTTATTATCTTCAGTTTCCGATTCGCTTTCACACTCTGTTTCATCTGATACCTTTGTTTTGCACTTTTTATTCTTTTTAGTAGAAATATCTAACCCATTCAA                                                                                                                                                                             ]
[-] EMBL AI111017             [                                                                                                                                                                                                                                                                TCCGATTCGCTTTCACACTCTGTTTCATCTGATACCTTNGTTTTGCACTTTTNATTCTTTTTAGTAGAAATATCTAAACCATTCAATACTGTTCCATTAATAATTGGTTGTTTAGTGCTTGNGCCTGTTTCATTTTCACCTTCAGNACCTATGTCAATAATGGAAACACTTTGNGTTTCATTGTTAGTAGACTCGGTTTCTGACTCAGTCAGTTTGTGTGATGGTTTCGGAAGGNTCTGTTGTTGTGTCAGGGACACTT]


>consensus_11040#1 TGGCTAATCTGACATTGACTTTTGCAATCAGTGGCAGGATTTGTCCGTGTTTAATAGTAA AGTTAAGCCGGATTTAAAAAATTATACGCTAATGAGTGGTTTTTTTTGTGCATTGAATAA ATGTAAAATCATCTAATTGGTACAACCGGGATTGTGTTTAATATTAACACAATTTTATTG TTTTCAATCTTCATCGTCTTCATTATCACTGTCAGAATTATCATCCTTATCGGATTCTTC TTTATTATCTTCAGTTTCCGATTCGCTTTCACACTCTGTTTCATCTGATACCTTTGTTTT GCACTTTTTATTCTTTTTAGTAGAAATATCTAACCCATTCAATACTGTTCCATTAATAAT TGGTTGTTTAGTGCTTGNGCCTGTTTCATTTTCACCTTCAGNACCTATGTCAATAATGGA AACACTTTGNGTTTCATTGTTAGTAGACTCGGTTTCTGACTCAGTCAGTTTGTGTGATGG TTTCGGAAGGNTCTGTTGTTGTGTCAGGGACACTT



consensusID : consensus_11040#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 393
fasta sequence
                              [TATTCAGCCACTCCCGATCGATATATGCATATGTGCGGGGTGAGATGTGTTAATAATGACTAAATAGTACATGATCTTTGCAATCAGTTGACAGAATTTGTTTCAGTGTTTAAATAGTAAAGTTTAGCGGATTTAAAAAAATAATACGCTAATGAATGTTTTTTTTGTTGCACTGAATAAATGTAAAATCATCTATTGTACACCCAGGGATTGTGTTTAATATTAACACAATTTTATTGTTTTCAATCTTCATCGTCTTCATTATCACTGTCAGAATTATCATCCTTATCGGATTCTTCTTTATTATCTTCAGTTTCCGATTCGCTTTCACACTCTGTTTCATCTGATACCTTTGTTTGCACTTATATTCTTTTAGGTGGACATATCTGAACC]

[-] EMBL AI639552             [TATTCAGCCACTCCCGATCGATATATGCATATGTGCGGGGTGAGATGTGTTAATAATGACTAAATAGTACATGATCTTTGCAATCAGTTGACAGAATTTGTTTCAGTGTTTAAATAGTAAAGTTTAGCGGATTTAAAAAAATAATACGCTAATGAATGTTTTTTTTGTTGCACTGAATAAATGTAAAATCATCTATTGTACACCCAGGGATTGTGTTTAATATTAACACAATTTTATTGTTTTCAATCTTCATCGTCTTCATTATCACTGTCAGAATTATCATCCTTATCGGATTCTTCTTTATTATCTTCAGTTTCCGATTCGCTTTCACACTCTGTTTCATCTGATACCTTTGTTTGCACTTATATTCTTTTAGGTGGACATATCTGAACC]


>consensus_11040#2 TATTCAGCCACTCCCGATCGATATATGCATATGTGCGGGGTGAGATGTGTTAATAATGAC TAAATAGTACATGATCTTTGCAATCAGTTGACAGAATTTGTTTCAGTGTTTAAATAGTAA AGTTTAGCGGATTTAAAAAAATAATACGCTAATGAATGTTTTTTTTGTTGCACTGAATAA ATGTAAAATCATCTATTGTACACCCAGGGATTGTGTTTAATATTAACACAATTTTATTGT TTTCAATCTTCATCGTCTTCATTATCACTGTCAGAATTATCATCCTTATCGGATTCTTCT TTATTATCTTCAGTTTCCGATTCGCTTTCACACTCTGTTTCATCTGATACCTTTGTTTGC ACTTATATTCTTTTAGGTGGACATATCTGAACC



consensusID : consensus_11040#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 212
fasta sequence
                              [TGAACAACATCTGTATGGTTTTCACCACTTGTCACAGTAGAAGTGCTTTCTGTATGATTTTCTAAGCCCTCTGAAGTTATTTGAACAACACTATCGTTCTGAAGAGTAACAGTTTCTGTAGTCAGAGTGGTGAGTAAATCAGTGTTGTCAGTGCTATCTGATTCGTTGTCGGAAGTTTCTATTGTAGATTCCGGGGGATGTCGTGTCTGGGT]

[-] EMBL CD077814             [TGAACAACATCTGTATGGTTTTCACCACTTGTCACAGTAGAAGTGCTTTCTGTATGATTTTCTAAGCCCTCTGAAGTTATTTGAACAACACTATCGTTCTGAAGAGTAACAGTTTCTGTAGTCAGAGTGGTGAGTAAATCAGTGTTGTCAGTGCTATCTGATTCGTTGTCGGAAGTTTCTATTGTAGATTCCGGGGGATGTCGTGTCTGGGT]


>consensus_11040#3 TGAACAACATCTGTATGGTTTTCACCACTTGTCACAGTAGAAGTGCTTTCTGTATGATTT TCTAAGCCCTCTGAAGTTATTTGAACAACACTATCGTTCTGAAGAGTAACAGTTTCTGTA GTCAGAGTGGTGAGTAAATCAGTGTTGTCAGTGCTATCTGATTCGTTGTCGGAAGTTTCT ATTGTAGATTCCGGGGGATGTCGTGTCTGGGT



consensusID : consensus_11040#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 141
fasta sequence
                              [AAAATTTATATTTCAGCCAATACCGAATATATATGTGCATATTGCGAAGAGATAAAATGTAATAAATAATGACTAAATAGTACATTGATTTTTTGCAATCAATTGACAGAATCTGTTTCTGGGTTTAAATAGTCAAGATTA]

[+] EMBL AI977436             [AAAATTTATATTTCAGCCAATACCGAATATATATGTGCATATTGCGAAGAGATAAAATGTAATAAATAATGACTAAATAGTACATTGATTTTTTGCAATCAATTGACAGAATCTGTTTCTGGGTTTAAATAGTCAAGATTA]


>consensus_11040#4 AAAATTTATATTTCAGCCAATACCGAATATATATGTGCATATTGCGAAGAGATAAAATGT AATAAATAATGACTAAATAGTACATTGATTTTTTGCAATCAATTGACAGAATCTGTTTCT GGGTTTAAATAGTCAAGATTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11040#0      AAGATTTATATTTCAGCCAATACCGAATATATATATGCATATTGTGAAGAGATAAAATGT 60
consensus_11040#3      ------------------------------------------------------------
consensus_11040#1      ------------------------------------------------------------
consensus_11040#2      ------------------------------------------------------------
consensus_11040#4      ------------------------------------------------------------
                                                                                   

consensus_11040#0      AATAAATAATGACTAAATAGTACATTGATCTTTTGCAATCAGTTGACAGAATTTGTTTCA 120
consensus_11040#3      ------------------------------------------------------------
consensus_11040#1      ------------------------------------------------------------
consensus_11040#2      ------------------------------------------------------------
consensus_11040#4      ------------------------------------------------------------
                                                                                   

consensus_11040#0      GTGTTTAAATAGTAAAGTTTAAGCGGAATTTAAAAAAATTAATACGCTAATTGATTGTTT 180
consensus_11040#3      ------------------------------------------------------------
consensus_11040#1      ------------------------------------------------------------
consensus_11040#2      ------------------------------------------------------------
consensus_11040#4      ------------------------------------------------------------
                                                                                   

consensus_11040#0      TTTTTGTTGCATTGAATAAATGTAAAATCATCTATTGGTACACCAGGGATTGTGTTTAAT 240
consensus_11040#3      ------------------------------------------------------------
consensus_11040#1      ------------------------------------------------------------
consensus_11040#2      ------------------------------------------------------------
consensus_11040#4      ------------------------------------------------------------
                                                                                   

consensus_11040#0      ATTAACACAATTTTATTGTTTTCAATCTTCATCGTCTTCATTATCACTGTCAGAATTATC 300
consensus_11040#3      ------------------------------------------------------------
consensus_11040#1      ------------------------------------------------------------
consensus_11040#2      ------------------------------------------------------------
consensus_11040#4      ------------------------------------------------------------
                                                                                   

consensus_11040#0      ATCCTTATCGGATTCTTCTTTATTATCTTCAGTTTCCGATTCGCTTTCACACTCTGTTTC 360
consensus_11040#3      ------------------------------------------------------------
consensus_11040#1      ------------------------------------------------------------
consensus_11040#2      ------------------------------------------------------------
consensus_11040#4      ------------------------------------------------------------
                                                                                   

consensus_11040#0      ATCTGATACCTTTGTTTTGCACTTTTTATTCTTTTTAGTAGAAATATCTAAACCATTCAA 420
consensus_11040#3      ------------------------------------------------------------
consensus_11040#1      ------------------------------------------------------------
consensus_11040#2      ------------------------------------------------------------
consensus_11040#4      ------------------------------------------------------------
                                                                                   

consensus_11040#0      TACTGTTCCATTAATAATTGGTTGTTTAGTGCTTGTGCCTGTTTCATTTTCACCTTCAGT 480
consensus_11040#3      ------------------------------------------------------------
consensus_11040#1      ------------------------------------------------------------
consensus_11040#2      ------------------------------------------------------------
consensus_11040#4      ------------------------------------------------------------
                                                                                   

consensus_11040#0      ACCTATGTCAATAATGGAAACACTTTGTGTTTCATTGTTAGTAGACTCGGTTTCTGACTC 540
consensus_11040#3      ------------------------------------------------------------
consensus_11040#1      ------------------------------------------------------------
consensus_11040#2      ------------------------------------------------------------
consensus_11040#4      ------------------------------------------------------------
                                                                                   

consensus_11040#0      AGTGACGTTGTTTGTCTCAGTTTGTGTGATGGTTTCGGAAGGTTCTGTTGTTGTGTCAGG 600
consensus_11040#3      ------------------------------------------------------------
consensus_11040#1      ------------------------------------------------------------
consensus_11040#2      ------------------------------------------------------------
consensus_11040#4      ------------------------------------------------------------
                                                                                   

consensus_11040#0      GACACTTTTATTCATGTTAGTGTACACGTTGCAAAGGCTAACAATTAATTTTGTCAAATT 660
consensus_11040#3      ------------------------------------------------------------
consensus_11040#1      ------------------------------------------------------------
consensus_11040#2      ------------------------------------------------------------
consensus_11040#4      ------------------------------------------------------------
                                                                                   

consensus_11040#0      ATTAGGATATCTAGCTGTTTCCGTGACTGTTTTTGCTTCAATATCAACACTTTCTGAAGT 720
consensus_11040#3      ------------------------------------------------------------
consensus_11040#1      ---------------------------------------------TGGCTAATCTGACAT 15
consensus_11040#2      ------------------------------------------------------------
consensus_11040#4      ------------------------------------------------------------
                                                                                   

consensus_11040#0      TGACTCTACTGGAGATTCATCGGTACTACTTTCGTCATCGTTATGGATCAGTGTAGAAGG 780
consensus_11040#3      ------------------------------------------------------------
consensus_11040#1      TGACTTTTGCAATCAGTGGCAGGATTTGTCCGTGTTTAATAGTAAAGTTAAGCCGGATTT 75
consensus_11040#2      ------------------------------------------------------------
consensus_11040#4      ------------------------------------------------------------
                                                                                   

consensus_11040#0      GGTAATATCTGAGTTAACAGTGCTTTCTGTTTGATTTTCTAAGTCTTCTGAAGTTGGACC 840
consensus_11040#3      ------------------------------------------------------------
consensus_11040#1      AAAAAATTATACGCTAATGAGTGGTTTTTTTTGTGCATTGAATAAATGTAAAATCATCTA 135
consensus_11040#2      ------------------------------------------------------------
consensus_11040#4      ------------------------------------------------------------
                                                                                   

consensus_11040#0      AGTCGACTGTGTGTCTGTGTAAGTACCGAACACTTCACAAACGTCACCAACAGCTTCCAT 900
consensus_11040#3      ------------------------------------------------------------
consensus_11040#1      ATTGGTACAACCGGGATTGTGTTTAATATTAACACAATTTTATTGTTTTCAATCTTCATC 195
consensus_11040#2      ------------------------------------------------------------
consensus_11040#4      ------------------------------------------------------------
                                                                                   

consensus_11040#0      CAAACGAGGAAGTGTATTAGCGTCTTTAGGGGTTTCTGTGTGGTTATCAAGATTTTCTGA 960
consensus_11040#3      ------------------------------------------------------------
consensus_11040#1      GTCTTCATTATCACTGTCAGAATTATCATCCTTATCGGATTCTTCTTTATTATCTTCAGT 255
consensus_11040#2      ------------------------------------------------------------
consensus_11040#4      ------------------------------------------------------------
                                                                                   

consensus_11040#0      GGTTGAATCAGATATAACTGTTTCTGTATGAACAACATCTGTATGGTTTTCACCACTTGT 1020
consensus_11040#3      ----------------------------TGAACAACATCTGTATGGTTTTCACCACTTGT 32
consensus_11040#1      TTCCGATTCGCTTTCACACTCTGTTTCATCTGATACCTTTGTTTTGCACTTTTTATTCTT 315
consensus_11040#2      -----------------------------------------TAT---T-CAGCCACTCCC 15
consensus_11040#4      ---------------------------------AAAATTTATAT---TTCAGCCAATACC 24
                                                                * *          * *   

consensus_11040#0      CACAGTAGAAGTGCTTTCTGTATGATTTTCTAAGCCCTCTGAAGTTATTTGAACAACACT 1080
consensus_11040#3      CACAGTAGAAGTGCTTTCTGTATGATTTTCTAAGCCCTCTGAAGTTATTTGAACAACACT 92
consensus_11040#1      TTTAGTAGAAATATCTAACCCATTCAATACTGTTCCATTAATAATTGGTTGTTTAGTGCT 375
consensus_11040#2      GATCG-ATATATGCATAT-GTGCGGGG-TGAGATGTGTTAA-TAATGACTAAATAGTACA 71
consensus_11040#4      GAATATATATGTGCATATTGCGAAGAGATAAAATGTAATAAATAATGACTAAATAGTACA 84
                             * *  *   *                             *   *    *   * 

consensus_11040#0      ATCGTTCTGAAGAGTAACAGTTTCTGTAGTCAGAGTGGTGAGTAAATCAGTGTTG---TC 1137
consensus_11040#3      ATCGTTCTGAAGAGTAACAGTTTCTGTAGTCAGAGTGGTGAGTAAATCAGTGTTG---TC 149
consensus_11040#1      TGNGCCTGTTTCATTTTCACCTTCAGNACCTATGTCAATAATGGAAACACTTTGNGTTTC 435
consensus_11040#2      TGA--TCTTTGCAAT--CAGTTGACAGAATTTGTTTCAGTGTTTAAATAGTAAAGT--TT 125
consensus_11040#4      TTGATTTTTTGCAAT--CAATTGACAGAATCTGTTTCTGGGTTTAAATAGTCAAGA--TT 140
                                   * *  **  *     *                **  * *       * 

consensus_11040#0      AGTGCTATCTGATTCGTTGTCGGA-------AGTTTCTATTGTAGATTCCGGGGGAT--- 1187
consensus_11040#3      AGTGCTATCTGATTCGTTGTCGGA-------AGTTTCTATTGTAGATTCCGGGGGAT--- 199
consensus_11040#1      ATTGTTAGTAGACTCGGTTTCTGACTCAGTCAGTTTGTGTGATGGTTTCGGAAGGNTCTG 495
consensus_11040#2      AGCGGATTTAAAAAAATAATACGCTAATGAATGTTTTTTTTGTTGCACTGAATAAATGTA 185
consensus_11040#4      A----------------------------------------------------------- 141
                       *                                                           

consensus_11040#0      --TTGAGGTTAGGTTGGCCACGTGTTTCAATGTTAGCAACGCCAGCCACTGTTGTCGG-- 1243
consensus_11040#3      --GTCGTGTCTGGGT--------------------------------------------- 212
consensus_11040#1      TTGTTGTGTCAGGGACACTT---------------------------------------- 515
consensus_11040#2      AAATCATCTATTGTACACCCAGGGATTGTGTTTAATATTAACACAATTTTATTGTTTTCA 245
consensus_11040#4      ------------------------------------------------------------
                                                                                   

consensus_11040#0      ------------------------------------------------------------
consensus_11040#3      ------------------------------------------------------------
consensus_11040#1      ------------------------------------------------------------
consensus_11040#2      ATCTTCATCGTCTTCATTATCACTGTCAGAATTATCATCCTTATCGGATTCTTCTTTATT 305
consensus_11040#4      ------------------------------------------------------------
                                                                                   

consensus_11040#0      ------------------------------------------------------------
consensus_11040#3      ------------------------------------------------------------
consensus_11040#1      ------------------------------------------------------------
consensus_11040#2      ATCTTCAGTTTCCGATTCGCTTTCACACTCTGTTTCATCTGATACCTTTGTTTGCACTTA 365
consensus_11040#4      ------------------------------------------------------------
                                                                                   

consensus_11040#0      ----------------------------
consensus_11040#3      ----------------------------
consensus_11040#1      ----------------------------
consensus_11040#2      TATTCTTTTAGGTGGACATATCTGAACC 393
consensus_11040#4      ----------------------------
                                                   




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)