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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11040#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 24 consensus length = 1243 fasta sequence
[AAGATTTATATTTCAGCCAATACCGAATATATATATGCATATTGTGAAGAGATAAAATGTAATAAATAATGACTAAATAGTAC-ATTGATCTTTTGCAATCAGTTGACAGAATTTGTTTCA-GTGTTTAAATAGTAAAGTTTAAGCGGAATTTAAAAAAATTAAT-ACGCTAATTGATTG-T-T-TTTTTT-GTTGCATTGAATAAATGTAAAATCATCTATTGGTACACCAGGGATTGTGTTTAATATTAACACAATTTTATTGTTTTCAATCTTCATCGTCTTCATTATCACTGT-CAGAATTA-TCATCCTTATCGGATTCTT-CTTTATTATCTTCAGTTTCCGATTCGCTTTCACA-CTCTGTTTCATCTGATACCTTTGTTTTGCACTTTTTATTCTTTTTAGTAGAAATATCTAAACCATTCAATACTGTTCCATTAATAATTGGTTGTTTAGTGCTTGTGCCTGTTTCATTTTCACCTTCAGTACCTATGTCAATAATGGAAACACTTTGTGTTTCATTGTTAGTA-GACTCGGTTTCTGAC-TCAGTGACGTTGTTTGTCTCAGTTTGTGTGATGGTTTCGGAAGGTTCTGTTGTTGTGTCAGGG-ACACTTTTATTCATGTTAGTGTACACGTTGCAAAGGCTAACAATTAATTTTGTCAAATTATTAGGATATCTAGCTGTTTCCGTGACTGTTTTTGCTTCAATATCAACACTTTCTGAAGTTGACTCTACTGGAGATTCATCGGTACTACTTTCGTCATCGTTATGGATCAGTGTAGAAGGGGTAATATCTGAGTTAACAGTGCTTTCTGTTTGATTTTCTAAGTCTTCTGAAGTTGGACCAGTCGACTGTGTGTCTGTGTAAGTACCGAACACTTCACAAACGTCACCAACAGCTTCCA-TCAAACGAGGAAGTGTATTAGCGTCTTTAGGGGTTTCTGTGTGGTTATCAAGATTTTCTGAGGTTGAATCAGATATAACTGTTTCTGTATGAACAACATCTGTATGGTTTTCACCACTTGTCACAGTAGAAGTGCTTTCTGTATGATTTTCTAAGCCCTCTGAAGTTATTTGAACAACACTATCGTTCTGAAGAGTAACAGTTTCTGTAGTCAGAGTGGTGAGTAAATCAGTGTTGTCAGTGCTATCTGATTCGTTGTCGGAAGTTTCTATTGTAGATTCCGGGGGATTTGAGGTTAGGTTGGCCACGTGTTTCAATGTTAGCAACGCCAGCCACTGTTGTCGG]
[+] EMBL AI976814 [AAGATTTATATTTCAGCCAATACCGAATATATATATGCATATTGTGAAGAGATAAAATGTAATAAATAATGACTAAATAGTAC ATTGATCTTTTGCAATCAGTTGACAGAATTTGTTTCA GTGTTTAAATAGTAAAGTTTAAGCGGAATTTAAAAAAATTAAT ACGCTAATTGATTGTT T TTTTTT GTTGCATTGAATAAATGTAAAATCATCTATTGGTACACCAGGGATTGTGTTTAATATTAACACAATTTTATTGTTTTCAATCTTCATCGGCTTCATTATCACTGG CAGAATTA TCATCCTTATCGGATTCTT CTTTATTATCTTCAGNTTCCGATTCGCTTTCACA CTCTGTTTCATATGATACCTTTGTTTTGCACTTTTTATTCTTTTTAGTAGAAATATCTAAACCATTCAATACTGTTCCAT ]
[+] EMBL AW017125 [AAGATTTATATTTCAGCCAATACCGAATATATATATGCATATTGTGAAGAGATAAAATGTAATAAATAATGACTAAATAGTAC ATTGATCTTTTGCAATCAGTTGACAGAATTTGTTTCA GTGTTTAAATAGTAAAGTTTAAGCGGAATTTAAAAAAATTAAT ACGCTAATTGATTG T T TTTTTT GTTGCATTGAATAAATGTAAAATCATCTATTGGTACACCAGGGATTGTGTTTAATATTAACACAATTTTATTGTTTTCAATCTTCATCGTCTTCATTATCACTGT CAGAATTA TCATCCTTATCGGATTCTT CTTTATTATCTTCAGTTTCCGATTCGCTTTCACA CTCTGTTTCATCTGATACCTTTGTTTTGCACTTTTTATTCTTTTTAGTAGAAATATCTAAACCATTCAATACTGTTCCATTAATAATTGGTTGTTTAGTGCTTGTGCCTGTTTCATTTTCACCTTTAGTACC ]
[+] EMBL AI026174 [AAGATTTATATTTCAGCCAATACCGAATATATATATGCATATTGTGAAGAGATAAAATGTAATAAATAATGACTAAATAGTAC ATTGATCTTTTGCAATCAGTTGACAGAATTTGTTT G GGGTTTAAATAGTAAAGTTTAAGCGGAATTTAAAAAAATTAAT ACGCTAATGGATTG T T TTTTTTGGTGGCAATAAATAAATGTAAAATCATCTATTGGa ]
[-] EMBL AI882639 [ AGATTTATATTTCAGCCAATACCGAATATATATATGCATATTGTGAAGAGATAAAATGTAATAAATAATGACTAAATAGTAC ATTGATCTTTTGCAATCAGTTGACAGAATTTGTTTCA GTGTTTAAATAGTAAAGTTTAAGCGGAATTTAAAAAAATTAAT ACGCTAATTGATTG T TGTTTTTT GTTGCAT ]
[-] EMBL AI882657 [ AGATTTATATTTCAGCCAATACCGAATATATATATGCATATTGTGAAGAGATAAAATGTAATAAATAATGACTAAATAGTAC ATTGATCTTTTGCAATCAGTTGACAGAATTTGTTTCA GTGTTTAAATAGTAAAGTTTAAGCGGAATTTAAAAAAATTAAT ACGCTAATTGATTG T TGTTTTTT GTTGCAT ]
[+] EMBL AI740286 [ GATTTATATTTCAGCCAATACCGAATATATATATGCATATTGTGAAGAGATAAAATGTAATAAATAATGACTAAATAGTACTATTGATCTTTTGCAATCAGTTGACAGAATTTGTTTCACGTGTTTAAATAGTAAAGTTTAAGCGGAATTTAAAAAAATTAAT ACGCTAATTGATTG Tagctttg ]
[+] EMBL AI740400 [ TATATTTCAGCCAATACCGAATATATATATGCATATTGTGAAGAGATAAAATGTAATAAATAATGACTAAATAGTAC ATTGATCTTTTGCAATCAGTTGACAGAATTTGTTTCA GTGTTTAAATAGTAAAGTTTAAGCGGAATTTAAAAAAATTAAT ACGCTAATTGATTG TCT TTTTTT GTTGCATTGAATAAATGTAAAATCATCTATTGGTACACCAGGGATTGTGTTTAATATTAACACAATTTTATTGTTTTCAATCTTCATCGTCTTCATTATCACTGTCCAGAATTA TCATCCTTAGGGGATTCTTCCTTTATTATCTTCAGTTTCCGATTCGCTTTCACA CTCTGTTTCACCTGATACCTTTGTTTTGCACTTTTTATTCTTTTT ]
[+] EMBL AI967917 [ TTCAGCCAATACTGAATATATATATGCATATTGTGAAGAGATAAAATGTAATAAATAATGACTAAATAGTAC ATTGATCTTTTGCAATCAGTTGACAGAATTTGTTTCA GTGTTTAAATAGT AAGTTTAAGCGGAATTT AAAAAATTAAT ACGCTAATTGATTG T T TTTTTT GGTGCATTGAATAAATGTAAAATCATCTATTGGTACACCAGGGATTGTGTTTAATATTAACCCCATTTTATTGGTTTCAATCTTCATCGGCTTCATTAT ACTGT CAGAATTA TCCTYCTTATCGGGTTC T CCTTATTA CTTCAG TTCCGATTCGCTTTCACA CTCTGTTTCA CTGAAACCTTTGTTTTGCAC TTTTA TCTCTTTAG AGAAAT TCTAA CACT TACACTGTgca ]
[-] EMBL AI764849 [ CTAAATAGTAC ATTGATCTTTNNCAATCAGTTGACAGAATTTGTTCCA GTGTTTAAATAGTAAAGTTTAAGCGGAATTTAAAAAAATTAAT ACGCTAATTNATTGTT T TTTTTT GTNNCATTGAATAAATGTAAAATCATCTATTTGTACACCBNNGATTGTGTTTAATATTAACACAATTTTATTGTTTTCAATCTTAATCGTCTTCATTATCACTGT CAGAATTACGCATCC ]
[-] EMBL AI111029 [ TTTAAAAAAATTAATAACGCTAATTGATTG T T TTTTTT GTTGCATTGAATAAANGTAAAATCATCTATTGGNACACCAGGGATTGTGTTTAATATTAACACAATTTTATTGNTTTCAATCTTCATCGTCTTCANAATCACTGT CAGAATTA TCATCCTTATCGGATTCTT CTTTATTATCTTCAGTTTCCGATTCGCTTTCACA CTCTGTTTCATCTGATACCTTTGTTTTGCACTTTTTATTCTTTTTAGTAGAAATATCTAAACCATTCAATACTGTTCCATTAATAATTGGTTGTTTAGTGCTTGTGCCTGTTTCATTTTCACCTTCAGTACCTATGTCAATAATGGAAACACTTTGTGTTTCATTGTTAGTA GACTCGGTTTCTGAC TCAGTGACGTTGTTTGTCTCAGTTTGTGTGATGGTTTCGGAAGGTTCTGTTGTTGTGTCAGGG ACACTT ]
[-] EMBL BE431256 [ AATTTTATTGTTTACAATCTTCATCGTCTTCATTATCACTGT CAGAA TA TCATCCTTATCGGATTCTT CTTTATTATCTTCAGTTTCCGATTCGCTTTCACACCTCTGTTTCATCTGATACCTTTGTTTTGCAC TTTTATTCTTTATAGTCG AATATCTAACCCATTCAATACTGTTCCATTAATAATTGGTTGTTTAGTGCTTGTGCCTGTTTCATTTTCACCTTCAGTACCTATGTCAATAATGGAAACACTTTGTGTTTCATTGTTAGTA GACTCGGTTTCTGAC TCAGTGACGTTGTTTGTCTCAGTTTGTGTGATGGTTTCGGAAGGTTCTGTTGTTGTGTCAGG ]
[-] EMBL AI740293 [ CACTGT GAGAAATA TCAT CTTATCGGA TCTT C TTATTATCTCCAGTTTCCGATTCGTTTTCACA CTCTG TTCATC GATA CTTTGTTTTGCACTTTTTATTCTTTTTGGTGGAAATATCTAAACCATTCAATACTGTTCCATTAATAATTGGTTGTTTAGTGCTTGTGCCTGTTTCATTTTCACCTTCAGTACCTATGTCAATAATGGAAACACTTTGTGTTTCATTGTTAGTA GACTCGGTTTCTGAC TCAGTGACGTTGTTTGTCTCAGTTTGTGTGATGGTTTCGGAA ]
[-] EMBL AA958287 [ CAC TTTTA TC TTTTAGTAGAAATATCTAAACCA TCAATACTG TCCATTAAAAATTGGTTG TTAGTGCTTGTGCCTGTTTCATTTTCACCTTCAGTACCTATGTCAATAATGGAAACACTTTGTGTTTCATTGTTAGTA GACTCGGTTTCTGAC TCAGTGACGTTGTTTGTCTCAGTTTGTGTGATGGTTTCGGAAGGTTCTGTTGTTGTGTCAGGG ACACTTTTATTCATGTTAGTGTACACGTTGCAAAGGCTAACAATTAATTTTGTCAAATTATTAGGATATCTAGCTGTTTCCGTGACTGTTTTTGCTTCAATATCAACACTTTCTGAAG TGACTCTACTGGAGATTCATCGGTACTACTTTCG ]
[-] EMBL AI374475 [ gACTTTGTGTTTCATTGGTGGTAGGACTCGGGTTCTGACTTCAGTGCCGTTGTTTGTCTCAGTTTGTGTGATGGTTTCGGAAGGTTCTGTTGTTGTGTCAGGG ACACTTTTGTTCATGTTAGTGTACACG ]
[+] EMBL CD138342 [ TTGTTTGTCTCAGTTTGTGTGATGGTTTCGGAAGGTTCTGTTGTTGTGTCAGGG ACACTTTTATTCATGTTAGTGTACACGTTGCAAAGGCTAACAATTAATTTTGTCAAATTATTAGGATATCTAGCTGTTCCCGTGACTGTTTTTGCTTCAATATCAACACTTTCTGAAGTTGACTCTACTGGAGATTCATCGGTACTACTTTCGTCATCGTTATGGATCAGTGTAGAAGGGGTAATATCTGAGTTAACAGTGCTTTCTGTTTGATTTTCTAAGTCTTCTGAAGTTGGACCAGTCGACTGTGTGTCTGTGTAAGTACCGAACACTTCACAAACGTCACCAACAGCTTCCc cat ]
[-] EMBL CD124678 [ TGTTTGTCTCAGTTTGTGTGATGGTTTCGGAAGGTTCTGTTGTTGTGTCAGGG ACACTTTTATTCATGTTAGTGTACACGTTGCAAAGGCTAACAATTAATTTTGTCAAATTATTAGGATATCTAGCTGTTTCCGTGACTGTTTTTGCTTCAATATCAACACTTTCTGAAGTTGACTCTACTGGAGATTCATCGGTACTACTTTCGTCATCGTTATGGATCAGTGTAGAAGGGGTAATATCTGAGTTAACAGTGCTTTCTGTTTGATTTTCTAAGTCTTCTGAAGTTGGACCAGTCGACTGTGTGTCTGTGTAAGTACCGAACACTTCACAAACGTCACCAACAGCTTCCA TCAAACGAGGAAGTGTATTAGCGTCTTTAGGGGTTTCTGTGTGGTTATCAAGATTTTCTGAGGTTGAATCAGATATAACTGTTTCTGTATGAACAAC ]
[+] EMBL CD121816 [ TGTCAGGGNACACTTTTATTCATGTTAGTGTACACGTTGCAAAGGCTAACAATTAATTTTGTCAAATTATTAGGATATCTAGCTGTTTCCGTGACTGTTTTTGCTTCAATATCAACACTTTCTGAAGTTGACTCTACTGGAGATTCATCGGTACTACTTTCGTCATCGTTATGGATCAGTGTAGAAGGGGTAATATCTGAGTTAACAGTGCTTTCTGTTTGATTTTCTAAGTCTTCTGAAGTTGGACCAGTCGACTGTGTGTCTGTGTAAGTACCGAACACTTCACAAACGTCACCAACAGCTTCCA TCAAACGAGGAAGTGTATTAGCGTCTTTAGGGGTTTCTGTGTGGTTATCAAGATTTTCTGAGGTCGAATCAGATAT ]
[-] EMBL CD069193 [ AAGGCTAACAATTAATTTTGTCAAATTATTAGGGTATCTAGCTGTTTCCGTGACTGTTTTTGCTTCAATATCAACACTTTCTGAAGTTGACTCTACTGGAGATTCATCGGTACTACTTTCGTCATCGTTATGGATCAGTGTAGAAGGGGTAATATCTGAGTTAACAGTGCTTTCTGTGTGATTTTCTAAGTCTTCTGAAGTTGGACCAGTCGACTGTGTGTCTGTGTAAGTACCGAACACTTCACATACGTCACCGACAGCTTCCA TCAAACGAGGAAGTGTATTAGCGTCTTTAGGGGTTTCTGTGTGGTTATCAAGATTTTCTGAGGTTGAATCAGATATAACTGTTTCTGTATGAACAACATCTGTATGGTTTTCACCACTTGTCACAGTAGAAGTGCTCTCTGTATGATTTTCTAAGCCCTCTGAAGTTATTTGAACAGCACTATCGTTCTGAAGAGTAACAGTTTCTGTAGTCAGAGTGGTGAGTAAATCAGTGTTGTCAGTGCTATCTGgggcat ]
[-] EMBL CD069339 [ TGTTTTTGCTTCAATATCAACACTTTCTGAAGTTGACTCTACTGGAGATTCATCGGTACTACTTTCGTCATCGTTATGGATCAGTGTAGAAGGGGTAATATCTGAGTTAACAGTGCTTTCTGTTTGATTTTCTAAGTCTTCTGAAGTTGGACCAGTCGACTGTGTGTCTGTGTAAGTACCGAACACTTCACAAACGTCACCAACAGCTTCCACTCAAACGAGGAAGTGTATTAGCGTCTTTAGGGGTTTCTGTGTGGTTATCAAGATTT ]
[+] EMBL CD155944 [ ATCGGTACTACTTTCGTCATCGTTATGGATCAGTGTAGAAGGGGTAATATCTGAGTTAACAGTGCTTTCTGTTTGATTTTCTAAGTCTTCTGAAGTTGGACCAGTCGACTGTGTGTCTGTGTAAGTACCGAACACTTCACAAACGTCACCAACAGCTTCCA TCAAACGAGGAAGTGTATTAGCGTCTTTAGGGGTTTCTGCGTGGTTATCAAGATTTTCTGAGGTTGAATCAGATATAACTGTTTCTGTATGAACAACATCTGTATGGTTTTCACCACTTGTCACAGTAGAAGTGCTTTCTGTATGATTTTCTAAGCCCTCCGCAGTTATTTTAACAACACTATCGTTCTGAAGAGTAACAGTTTCTGTAGTCAGAGTGGTGAGTAAATCAGTGTTGTCAGTGCTATCTGATTCGTTGTCGGA ]
[+] EMBL CD135189 [ ATCGGTACTACTTTCGTCATCGTTATGGATCAGTGTAGAAGGGGTAATATCTGAGTTAACAGTGCTTTCTGTTTGATTTTCTAAGTCTTCTGAAGTTGGACCAGTCGACTGTGTGTCTCTGTAAGTACCGAACACTTCACAAACGTCACCAACAGCTTCCA TCAAACGAGGAAGTGTATTAGCGTCTTTAGGGGTTTCTGTGTGGTTATCAAGATTTTCTGAGGTTGAATCAGATATAACTGTTTCTGTATGAACAACATCTGTATGGTTTTCACCACTTGTCACAGTAGAAGTGCTTTCTGTATGATTTTCTAAGCCCTCTGAAGTTATTTGAACAACACTATCGTTCTGAAGAGTAACAGTTTCTGTAGTCAGAGTGGTGAGTAAATCAGTGTTGTCAGTGCTATCTGATTCGTTGTCGGA ]
[-] EMBL CD119886 [ TCGGTACTACTTTCGTCATCGTTATGGATCAGTGTAGAAGGGGTAATATCTGAGTTAACAGTGCTTTCTGTTTGATTTTCTAAGTCTTCTGAAGTTGGACCAGTCGACTGTGTGTCTGTGTAAGTACCGAACACTTCACAAACGTCACCAACAGCTTCCA TCAAACGAGGAAGTGTATTAGCGTCTTTAGGGGTTTCTGTGTGGTTATCAAGATTTTCTGAGGTTGAATCAGATATAACTGTTTCTGTATGAACAACATCTGTATGGTTTTCACCACTTGTCACAGTAGAAGTGCTTTCTGTATGATTTTATAAGCCCTCTGAAGTTATTTGAACAACACTATCGTTCTGAAGAGTAACAGTTTCTGTAGCCAGAGTGGTGAGTAAATCAGTGTTGTCAGTGCTATCTGATTCGTTGTCGGAAGTTTCTATTGTAGA ]
[-] EMBL CD115696 [ TGCTTTCTGTTTGATTTTCTAAGTCTTCTGAAGTTGGACCAGTCGACTGTGTGTCTGTGTAAGTACCGAACACTTCACAAACGTCACCAACAGCTTCCA TCAAACGAGGAAGTGTATTAGCGTCTTTAGGGGTTTCTGTGTGGTTATCAAGATTTTCTGAGGTTGAATCAGATATAACTGTTTCTGTATGAACAACATCTGTATGGTTTTCACCACTTGTCACAGTAGAAGTGCTTTCTGTATGATTTTCTAAGCCCTCTGAAGTTATTTGAACAACACTATCGTTCTGAAGAGTAACAGTTTCTGTAGTCAGAGTGGTGAGTAAATCAGTGTTGTCAGTGCTATCTGATTCGTTGTCGGAAGTTTCTATTGTAGATTCCGGGGGATTTGAGGTTAGGTTGGCCACGTGTTTCAATGTTAGCAACGCCAGCCACTGTTGTCGG]
[-] EMBL CD119657 [ AAGTGTATTAGCGTCTTTAGGGGTTTCTGTGTGGTTATCAAGATTTTCTAAGGTTGAATCAGATATAACTGTTTCTGTATGAACAACATCTGTATGGTTTTCACCACTTGTCACAGTAGAAGTGCTTTCTGTATGATTTTCTAAGCCCTCTGAAGTTATTTGAACAACACTATCGTTCTGAAGAGTAACAGTTTCTGTAGTCAGAGTGGTGAGTAAATCAGTGTTGTCAGTGCCATCTGATTCGTTGTCGGAAGTTTCTATTGAAGAT ]
consensusID : consensus_11040#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 515 fasta sequence
[TGGCTAATCTGACATTGACTTTTGCAATCAGTGGCAGGATTTGTCCGTGTTTAATAGTAAAGTTAAGCCGGATTTAAAAAATTATACGCTAATGAGTGGTTTTTTTTGTGCATTGAATAAATGTAAAATCATCTAATTGGTACAACCGGGATTGTGTTTAATATTAACACAATTTTATTGTTTTCAATCTTCATCGTCTTCATTATCACTGTCAGAATTATCATCCTTATCGGATTCTTCTTTATTATCTTCAGTTTCCGATTCGCTTTCACACTCTGTTTCATCTGATACCTTTGTTTTGCACTTTTTATTCTTTTTAGTAGAAATATCTAACCCATTCAATACTGTTCCATTAATAATTGGTTGTTTAGTGCTTGNGCCTGTTTCATTTTCACCTTCAGNACCTATGTCAATAATGGAAACACTTTGNGTTTCATTGTTAGTAGACTCGGTTTCTGACTCAGTCAGTTTGTGTGATGGTTTCGGAAGGNTCTGTTGTTGTGTCAGGGACACTT]
[-] EMBL AI618802 [TGGCTAATCTGACATTGACTTTTGCAATCAGTGGCAGGATTTGTCCGTGTTTAATAGTAAAGTTAAGCCGGATTTAAAAAATTATACGCTAATGAGTGGTTTTTTTTGTGCATTGAATAAATGTAAAATCATCTAATTGGTACAACCGGGATTGTGTTTAATATTAACACAATTTTATTGTTTTCAATCTTCATCGTCTTCATTATCACTGTCAGAATTATCATCCTTATCGGATTCTTCTTTATTATCTTCAGTTTCCGATTCGCTTTCACACTCTGTTTCATCTGATACCTTTGTTTTGCACTTTTTATTCTTTTTAGTAGAAATATCTAACCCATTCAA ]
[-] EMBL AI111017 [ TCCGATTCGCTTTCACACTCTGTTTCATCTGATACCTTNGTTTTGCACTTTTNATTCTTTTTAGTAGAAATATCTAAACCATTCAATACTGTTCCATTAATAATTGGTTGTTTAGTGCTTGNGCCTGTTTCATTTTCACCTTCAGNACCTATGTCAATAATGGAAACACTTTGNGTTTCATTGTTAGTAGACTCGGTTTCTGACTCAGTCAGTTTGTGTGATGGTTTCGGAAGGNTCTGTTGTTGTGTCAGGGACACTT]
consensusID : consensus_11040#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence
[TATTCAGCCACTCCCGATCGATATATGCATATGTGCGGGGTGAGATGTGTTAATAATGACTAAATAGTACATGATCTTTGCAATCAGTTGACAGAATTTGTTTCAGTGTTTAAATAGTAAAGTTTAGCGGATTTAAAAAAATAATACGCTAATGAATGTTTTTTTTGTTGCACTGAATAAATGTAAAATCATCTATTGTACACCCAGGGATTGTGTTTAATATTAACACAATTTTATTGTTTTCAATCTTCATCGTCTTCATTATCACTGTCAGAATTATCATCCTTATCGGATTCTTCTTTATTATCTTCAGTTTCCGATTCGCTTTCACACTCTGTTTCATCTGATACCTTTGTTTGCACTTATATTCTTTTAGGTGGACATATCTGAACC]
[-] EMBL AI639552 [TATTCAGCCACTCCCGATCGATATATGCATATGTGCGGGGTGAGATGTGTTAATAATGACTAAATAGTACATGATCTTTGCAATCAGTTGACAGAATTTGTTTCAGTGTTTAAATAGTAAAGTTTAGCGGATTTAAAAAAATAATACGCTAATGAATGTTTTTTTTGTTGCACTGAATAAATGTAAAATCATCTATTGTACACCCAGGGATTGTGTTTAATATTAACACAATTTTATTGTTTTCAATCTTCATCGTCTTCATTATCACTGTCAGAATTATCATCCTTATCGGATTCTTCTTTATTATCTTCAGTTTCCGATTCGCTTTCACACTCTGTTTCATCTGATACCTTTGTTTGCACTTATATTCTTTTAGGTGGACATATCTGAACC]
consensusID : consensus_11040#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 212 fasta sequence
[TGAACAACATCTGTATGGTTTTCACCACTTGTCACAGTAGAAGTGCTTTCTGTATGATTTTCTAAGCCCTCTGAAGTTATTTGAACAACACTATCGTTCTGAAGAGTAACAGTTTCTGTAGTCAGAGTGGTGAGTAAATCAGTGTTGTCAGTGCTATCTGATTCGTTGTCGGAAGTTTCTATTGTAGATTCCGGGGGATGTCGTGTCTGGGT]
[-] EMBL CD077814 [TGAACAACATCTGTATGGTTTTCACCACTTGTCACAGTAGAAGTGCTTTCTGTATGATTTTCTAAGCCCTCTGAAGTTATTTGAACAACACTATCGTTCTGAAGAGTAACAGTTTCTGTAGTCAGAGTGGTGAGTAAATCAGTGTTGTCAGTGCTATCTGATTCGTTGTCGGAAGTTTCTATTGTAGATTCCGGGGGATGTCGTGTCTGGGT]
consensusID : consensus_11040#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 141 fasta sequence
[AAAATTTATATTTCAGCCAATACCGAATATATATGTGCATATTGCGAAGAGATAAAATGTAATAAATAATGACTAAATAGTACATTGATTTTTTGCAATCAATTGACAGAATCTGTTTCTGGGTTTAAATAGTCAAGATTA]
[+] EMBL AI977436 [AAAATTTATATTTCAGCCAATACCGAATATATATGTGCATATTGCGAAGAGATAAAATGTAATAAATAATGACTAAATAGTACATTGATTTTTTGCAATCAATTGACAGAATCTGTTTCTGGGTTTAAATAGTCAAGATTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11040#0 AAGATTTATATTTCAGCCAATACCGAATATATATATGCATATTGTGAAGAGATAAAATGT 60
consensus_11040#3 ------------------------------------------------------------
consensus_11040#1 ------------------------------------------------------------
consensus_11040#2 ------------------------------------------------------------
consensus_11040#4 ------------------------------------------------------------
consensus_11040#0 AATAAATAATGACTAAATAGTACATTGATCTTTTGCAATCAGTTGACAGAATTTGTTTCA 120
consensus_11040#3 ------------------------------------------------------------
consensus_11040#1 ------------------------------------------------------------
consensus_11040#2 ------------------------------------------------------------
consensus_11040#4 ------------------------------------------------------------
consensus_11040#0 GTGTTTAAATAGTAAAGTTTAAGCGGAATTTAAAAAAATTAATACGCTAATTGATTGTTT 180
consensus_11040#3 ------------------------------------------------------------
consensus_11040#1 ------------------------------------------------------------
consensus_11040#2 ------------------------------------------------------------
consensus_11040#4 ------------------------------------------------------------
consensus_11040#0 TTTTTGTTGCATTGAATAAATGTAAAATCATCTATTGGTACACCAGGGATTGTGTTTAAT 240
consensus_11040#3 ------------------------------------------------------------
consensus_11040#1 ------------------------------------------------------------
consensus_11040#2 ------------------------------------------------------------
consensus_11040#4 ------------------------------------------------------------
consensus_11040#0 ATTAACACAATTTTATTGTTTTCAATCTTCATCGTCTTCATTATCACTGTCAGAATTATC 300
consensus_11040#3 ------------------------------------------------------------
consensus_11040#1 ------------------------------------------------------------
consensus_11040#2 ------------------------------------------------------------
consensus_11040#4 ------------------------------------------------------------
consensus_11040#0 ATCCTTATCGGATTCTTCTTTATTATCTTCAGTTTCCGATTCGCTTTCACACTCTGTTTC 360
consensus_11040#3 ------------------------------------------------------------
consensus_11040#1 ------------------------------------------------------------
consensus_11040#2 ------------------------------------------------------------
consensus_11040#4 ------------------------------------------------------------
consensus_11040#0 ATCTGATACCTTTGTTTTGCACTTTTTATTCTTTTTAGTAGAAATATCTAAACCATTCAA 420
consensus_11040#3 ------------------------------------------------------------
consensus_11040#1 ------------------------------------------------------------
consensus_11040#2 ------------------------------------------------------------
consensus_11040#4 ------------------------------------------------------------
consensus_11040#0 TACTGTTCCATTAATAATTGGTTGTTTAGTGCTTGTGCCTGTTTCATTTTCACCTTCAGT 480
consensus_11040#3 ------------------------------------------------------------
consensus_11040#1 ------------------------------------------------------------
consensus_11040#2 ------------------------------------------------------------
consensus_11040#4 ------------------------------------------------------------
consensus_11040#0 ACCTATGTCAATAATGGAAACACTTTGTGTTTCATTGTTAGTAGACTCGGTTTCTGACTC 540
consensus_11040#3 ------------------------------------------------------------
consensus_11040#1 ------------------------------------------------------------
consensus_11040#2 ------------------------------------------------------------
consensus_11040#4 ------------------------------------------------------------
consensus_11040#0 AGTGACGTTGTTTGTCTCAGTTTGTGTGATGGTTTCGGAAGGTTCTGTTGTTGTGTCAGG 600
consensus_11040#3 ------------------------------------------------------------
consensus_11040#1 ------------------------------------------------------------
consensus_11040#2 ------------------------------------------------------------
consensus_11040#4 ------------------------------------------------------------
consensus_11040#0 GACACTTTTATTCATGTTAGTGTACACGTTGCAAAGGCTAACAATTAATTTTGTCAAATT 660
consensus_11040#3 ------------------------------------------------------------
consensus_11040#1 ------------------------------------------------------------
consensus_11040#2 ------------------------------------------------------------
consensus_11040#4 ------------------------------------------------------------
consensus_11040#0 ATTAGGATATCTAGCTGTTTCCGTGACTGTTTTTGCTTCAATATCAACACTTTCTGAAGT 720
consensus_11040#3 ------------------------------------------------------------
consensus_11040#1 ---------------------------------------------TGGCTAATCTGACAT 15
consensus_11040#2 ------------------------------------------------------------
consensus_11040#4 ------------------------------------------------------------
consensus_11040#0 TGACTCTACTGGAGATTCATCGGTACTACTTTCGTCATCGTTATGGATCAGTGTAGAAGG 780
consensus_11040#3 ------------------------------------------------------------
consensus_11040#1 TGACTTTTGCAATCAGTGGCAGGATTTGTCCGTGTTTAATAGTAAAGTTAAGCCGGATTT 75
consensus_11040#2 ------------------------------------------------------------
consensus_11040#4 ------------------------------------------------------------
consensus_11040#0 GGTAATATCTGAGTTAACAGTGCTTTCTGTTTGATTTTCTAAGTCTTCTGAAGTTGGACC 840
consensus_11040#3 ------------------------------------------------------------
consensus_11040#1 AAAAAATTATACGCTAATGAGTGGTTTTTTTTGTGCATTGAATAAATGTAAAATCATCTA 135
consensus_11040#2 ------------------------------------------------------------
consensus_11040#4 ------------------------------------------------------------
consensus_11040#0 AGTCGACTGTGTGTCTGTGTAAGTACCGAACACTTCACAAACGTCACCAACAGCTTCCAT 900
consensus_11040#3 ------------------------------------------------------------
consensus_11040#1 ATTGGTACAACCGGGATTGTGTTTAATATTAACACAATTTTATTGTTTTCAATCTTCATC 195
consensus_11040#2 ------------------------------------------------------------
consensus_11040#4 ------------------------------------------------------------
consensus_11040#0 CAAACGAGGAAGTGTATTAGCGTCTTTAGGGGTTTCTGTGTGGTTATCAAGATTTTCTGA 960
consensus_11040#3 ------------------------------------------------------------
consensus_11040#1 GTCTTCATTATCACTGTCAGAATTATCATCCTTATCGGATTCTTCTTTATTATCTTCAGT 255
consensus_11040#2 ------------------------------------------------------------
consensus_11040#4 ------------------------------------------------------------
consensus_11040#0 GGTTGAATCAGATATAACTGTTTCTGTATGAACAACATCTGTATGGTTTTCACCACTTGT 1020
consensus_11040#3 ----------------------------TGAACAACATCTGTATGGTTTTCACCACTTGT 32
consensus_11040#1 TTCCGATTCGCTTTCACACTCTGTTTCATCTGATACCTTTGTTTTGCACTTTTTATTCTT 315
consensus_11040#2 -----------------------------------------TAT---T-CAGCCACTCCC 15
consensus_11040#4 ---------------------------------AAAATTTATAT---TTCAGCCAATACC 24
* * * *
consensus_11040#0 CACAGTAGAAGTGCTTTCTGTATGATTTTCTAAGCCCTCTGAAGTTATTTGAACAACACT 1080
consensus_11040#3 CACAGTAGAAGTGCTTTCTGTATGATTTTCTAAGCCCTCTGAAGTTATTTGAACAACACT 92
consensus_11040#1 TTTAGTAGAAATATCTAACCCATTCAATACTGTTCCATTAATAATTGGTTGTTTAGTGCT 375
consensus_11040#2 GATCG-ATATATGCATAT-GTGCGGGG-TGAGATGTGTTAA-TAATGACTAAATAGTACA 71
consensus_11040#4 GAATATATATGTGCATATTGCGAAGAGATAAAATGTAATAAATAATGACTAAATAGTACA 84
* * * * * * * *
consensus_11040#0 ATCGTTCTGAAGAGTAACAGTTTCTGTAGTCAGAGTGGTGAGTAAATCAGTGTTG---TC 1137
consensus_11040#3 ATCGTTCTGAAGAGTAACAGTTTCTGTAGTCAGAGTGGTGAGTAAATCAGTGTTG---TC 149
consensus_11040#1 TGNGCCTGTTTCATTTTCACCTTCAGNACCTATGTCAATAATGGAAACACTTTGNGTTTC 435
consensus_11040#2 TGA--TCTTTGCAAT--CAGTTGACAGAATTTGTTTCAGTGTTTAAATAGTAAAGT--TT 125
consensus_11040#4 TTGATTTTTTGCAAT--CAATTGACAGAATCTGTTTCTGGGTTTAAATAGTCAAGA--TT 140
* * ** * * ** * * *
consensus_11040#0 AGTGCTATCTGATTCGTTGTCGGA-------AGTTTCTATTGTAGATTCCGGGGGAT--- 1187
consensus_11040#3 AGTGCTATCTGATTCGTTGTCGGA-------AGTTTCTATTGTAGATTCCGGGGGAT--- 199
consensus_11040#1 ATTGTTAGTAGACTCGGTTTCTGACTCAGTCAGTTTGTGTGATGGTTTCGGAAGGNTCTG 495
consensus_11040#2 AGCGGATTTAAAAAAATAATACGCTAATGAATGTTTTTTTTGTTGCACTGAATAAATGTA 185
consensus_11040#4 A----------------------------------------------------------- 141
*
consensus_11040#0 --TTGAGGTTAGGTTGGCCACGTGTTTCAATGTTAGCAACGCCAGCCACTGTTGTCGG-- 1243
consensus_11040#3 --GTCGTGTCTGGGT--------------------------------------------- 212
consensus_11040#1 TTGTTGTGTCAGGGACACTT---------------------------------------- 515
consensus_11040#2 AAATCATCTATTGTACACCCAGGGATTGTGTTTAATATTAACACAATTTTATTGTTTTCA 245
consensus_11040#4 ------------------------------------------------------------
consensus_11040#0 ------------------------------------------------------------
consensus_11040#3 ------------------------------------------------------------
consensus_11040#1 ------------------------------------------------------------
consensus_11040#2 ATCTTCATCGTCTTCATTATCACTGTCAGAATTATCATCCTTATCGGATTCTTCTTTATT 305
consensus_11040#4 ------------------------------------------------------------
consensus_11040#0 ------------------------------------------------------------
consensus_11040#3 ------------------------------------------------------------
consensus_11040#1 ------------------------------------------------------------
consensus_11040#2 ATCTTCAGTTTCCGATTCGCTTTCACACTCTGTTTCATCTGATACCTTTGTTTGCACTTA 365
consensus_11040#4 ------------------------------------------------------------
consensus_11040#0 ----------------------------
consensus_11040#3 ----------------------------
consensus_11040#1 ----------------------------
consensus_11040#2 TATTCTTTTAGGTGGACATATCTGAACC 393
consensus_11040#4 ----------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||