These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11044#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1553 fasta sequence [TCTTGGTTCCTCCTGTTAGTCTAGTACTTTGCTATATAGAAAACTTCGAACATTGACGTATTACCTTTCTCGAAACTTCGTCTATATTAATCTTCTTCTCAAGATTTGTTTGAAGTGAATATCAGGCTTTCATCAAACAATAAACACTCGATTCACATAATAAAAATGGCGTCAGGTCTTGCTAGATCAAAGCTGATGAATTTTGTTTTTAGGTCTCCGTGGAACCCCGTGTCACTCATCTATCGTCCTGAGTGTTCCTCCGCAAAATTTAGTCTTTCTGACTACAAGTCTTTTAAGTTAGATTCCACACCAGCAAATGAAACTGAATGCAGTCGTGATGATGCACTTAGATACCTCGAGAGTCTTCACCGTATTCGTAGAATGGAAACGGCATTAGGTAACATGTATAAAGAAAAGCTTATTCGTGGTTTCTGTCATCTATACTCGGGTCAGGAAGCAGTTGCAGTCGGTATTGAAGCTGCTTTACAG-CCAGGCGATACTATTATCACTGCTTATCGCTGCCATGGCTTTACAATG-ACTCGCGGTGTTCCTATCCACAATATAGTTGCAGAACTCGCAGGAAGGAAGACTGGATGCACAAAAGGTTTAGGGGGCAGTATGCATCTTTACGCGAAAGATTTCTATGGAGGTAAT-GGCATCGTTGGCGCCCAGGTTCCTTTGGGTGTTGGAATAGCATTACGTATGAAACATCGTGGGGAAAAGTTTGTCTCTGTAACTCTT-TATGGAGATGGTGCAGCTAACCAGGGACAGGTGTTTGAGGCCTTTAATATAGCGAAGTTATGGAATCTTCCTGTGATTTTCATTTGTGAAAACAATAAATATGGTATGGGTACATCTGTGCAGCGCTCTTCGGCCAATACTAGTTACTATACTCGTGGAGATTACATTCCTGGATTGTGGGTTGATGGTATGGATATACTTACTGTTAGAGAAGCCACACGTTTTGCTGCTGATTGGTGTCGTTCTGACAAAGGACCAATACTGTTAGAAACAGAGACTTATCGTTACCATGGTCATAGTATGAGCGACCCAGGCACTAGTTATCGTACACGTGAAGAAGTTCAGTCGATGAGGCGTGGACGAGATCCTATCGCTTTATTCCAGAAGAGCATTGTAGACAATGGGCTATGTACACAGGATGAGGTTAAG-GAGATCGAAAAAAGGGTCCGAATTGAAGTAGATAAAGAAGTAGAGAAGGCGATGAGCGACTCAGAACCACCACTAGAGACGATGTTTGGAAATATTTATCATGGGATACCTCCAAACTACAAGATTCGAGGTTGCGATCTAAAAACTTGGGGTTCACCATTTGTCACTAAGTGGTGAGGTAGCTTCACGTTTTCTGAATTTTGAAGAAGCTGGTTATTATATACTATCTAATTTATTAGTCAGGCTTTTAGTATTTTCTAAGGTACGAATAATCACAAATATTTGATCCTTTCATAACAGCCTGTGTACCTATAAATAATTTTATAACTTATATCCTCTAAAATACAAACTTATACTATAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BF936614 [TCTTGGTTCCTCCTGTTAGTCTAGTACTTTGCTATATAGAAAACTTCGAACATTGACGTATTACCTTTCTCGAAACTTCGTCTATATTAATCTTCTTCTCAAGATTTGTTTGAAGTGAATATCAGGCTTTCATCAAACAATAAACACTCGATTCACATAATAAAAATGGCGTCAGGTCTTGCTAGATCAAAGCTGATGAATTTTGTTTTTAGGTCTCCGTGGAACCCCGTGTCACTCATCTATCGTCCTGAGTGTTCCTCCGCAAAATTTAGTCTTTCTGACTACAAGTCTTTTAAGTTAGATTCCACACCAGCAAATGAAACTGAATGCAGTCGTGATGATGCACTTAGATACCTCGAGAGTCTTCACCGTATTCGTAGAATGGAAACGGCATTAGGTAACATGTATAAAGAAAAGCTTATTCGTGGTTTCTGTCATCTATACTCGGGTCAGGAAGCAGTTGCAGTCGGTATTGAAGCTGCTTTACAG CCAGGCGATACTATTATCACTGCTTATCGCTGCCATGGCTTTACAATGAACTCGCGGTGTTCCTATCCACAATATAGTTGCAGAACTCGCAGGAAGGAAGACTGGATGC CAAAAGGTTTAGGGGGCAGTATGCATCTTTACGCGAAAGATTTCTATGGAGGTAATGGGCATC ] [+] EMBL AI975822 [TCTTGGTTCCTCCTGTTAGTCTAGTACTTTGCTATATAGAAAACTTCGAACATTGACGTATTACCTTTCTCGAAACTTCGTCTATATTAATCTTCTTCTCAAGATTTGTTTGAAGTGAATATCAGGCTTTCATCAAACAATAAACACTCGATTCACATAATAAAAATGGCGTCAGGTCTTGCTAGATCAAAGCTGATGAATTTTGTTTTTAGGTCTCCGTGGAACCCCGTGTCACTCATCTATCGTCCTGAGTGTTCCTCCGCAAAATTTAGTCTTTCTGACTACAAGTCTTTTAAGTTAGATTCCACACCAGCAAATGAAACTGAATGCAGTCGTGATGATGCACTTAGATACCTCGAGAGTCTTCACCGTATTCGTAGAATGGAAACGGCATTAGGTAACATGTATAAAGAAAAGCTTATTCGTGGTTTCTGTCATCTATACTCGGGTCANGGAGCAGTTGCAGTCGGTATTGAAGCTGCTTTACAGCCCAGGCG ] [-] EMBL CD156236 [ CGTCTATATTAATCTTCTTCTCAAGATTTGTTTGAAGTGACTATCAGGCTTTCATCAAACAATAAACACTCGATTCACATAATAAAAATGGCGTCAGGTCTTGCTAGATCAAAGCTGATGAATTTTGTTTTTAGGTCTCCGTGGAACCCCGTGTCACTCATCTATCGTCCTGAGTGTTCCTCCGCAAAATTTAGTCTTTCTGACTACAAGTCTTTTAAGTTAGATTCCACACCAGCAAATGGAACTGAATGCAGTCGTGATGATGCACTTAGATACCTCGAGAGTCTTC ] [+] EMBL CD150269 [ CTTTCATCAAACAATAAACACTCGATTCACATAATAAAAATGGCGTCAGGTCTTGCTAGATCAAAGCTGATGAATTTTGTTTTTAGGTCTCCGTGGAACCCCGTGTCGCTCATCTATCGTCCTGAGTGTTCCTCCGCAAAATTTAGTCTTTCTGACTACAAGTCTTTTAAGTTAGATTCCACACCAGCAAATGAAACTGAATGCAGTCGTGATGATGCACTTAGATACCTCGAGAGTCTTCACCGTATTCGTAGAATGGAAACGGCATTAGGTAACATGTATAAAGAAAAGCTTATTCGCGGTTTCTGTCATCTATACTCGGGTCAGGAAGCAGTTGCAGTCGGTATTGAAGCTGCTTTACAG CCAGGCGATACTATTATCACTGCTTATCGCTGCCATGGCTTTACAATG ACTCGCGGTGTTCCTATCCACAATATAGTTGCAGAACTCGCAGGAAGGAAGAC ] [-] EMBL CD155319 [ AAATTTAGTCTTTCTGACTACAAGTCTTTTAAGTTAGATTCCACACCAGCAAATGAAACTGAATGCAGTCGTGATGATGCACTTAGATACCTCGAGAGTCTTCACCGTATTCGTAGAATGGAAACGGCATTAGGTAACATGTATAAAGAAAAGCTTATTCGTGGTTTCTGTCATCTATACTCGGGTCAGGAAGCAGTTGCAGTCGGTATTGAAGCTGCTTTACAG CCAGGCGATACTATTATCACTGCTTATCGCTGCCATGGCTTTACAATG ACTCGCGGTGTTCCTATCCACAATATAGTTGCAGAACTCGCAGGAAGGAAGACTGGATGCACAAAAGGTTTAGGGGGCAGTATGCATCTTTACGCGAAAGATTTCTATGGAGGTAAT GGCATCGTTGGCGCCCAGGTTCCTTTGGGTGTTGGAATAGCATTACGTATGAAACATCGTGGGGAAAAGTTTGTCTCTGTAACTCTT TATGGAGATGGTG ] [-] EMBL CD145719 [ GTATTCGTAGAATGGAAACGGCATTAGGTAACATGTATAAAGAAAAGCTTATTCGTGGTTTCTGTCATCTATACTCGGGTCAGGAAGCAGTTGCAGTCGGTATTGAAGCTGCTTTACAG CCAGGCGATACTATTATCACTGCTTATCGCTGCCATGGCTTTACAATG ACTCGCGGTGTTCCTATCCACAATATAGTTGCAGAACTCGCAGGAAGGAAGACTGGATGCACAAAAGGTTTAGGGGGCAGTATGCATCTTTACGCGAAAGATTTCTATGGAGGTAAT GGCATCGTTGGCGCCCAGGTTCCTTTGGGTGTTGGAATAGCATTACGTATGAAACATCGTGGGGAAAAGTTTGTCTCTGTAACTCTT TATGGAGAAGGTGCAGCTAACCAGGGACAGGTGTTTGAGGCCTTTAATATAACGAAGTTAAGGAATCTTCCTGTGATATTCGTTTG ] [+] EMBL CD080746 [ GTTGCAGTCGGTATTGAAGCTGCTTTACAG CCAGGCGATACTATTATCACTGCTTATCGCTGCCATGGCTTTACAATG ACTCGCGGTGTTCCTATCCACAATATAGTTGCAGAACTCGCAGGAAGGAAGACTGGATGCACAAAAGGTTTAGGGGGCAGTATGCATCTTTACACGAAAGATTTCTATGGAGGTAAT GGCATCGTTGGCGCCCAGGTTCCTTTGGGTGTTGGAATAGCATTACGTATGAAACATCGTGGGGAAAAGTTTGTCTCTGTAACTCTT TATGGAGATGGTGCAGCTAACCAGGGACAGGTGTTTGAGGCCTTTAATATAGCGAAGTTATGGAATCTTCCTGTGATTTTCATTTGTGAAAACAATAAATATGGTATGGGTACATCTGTGCAGCGCTCTTCGGCCAATACTAGTTACTATACTCGTGGAGATTACATTCCTGGATTGTGGGTTGATGGTATGGATATACTTACTGTTAGAGAAGCCACACGTTTTGCTGCTGATTGGTGTCGTTCTGACAAAGGACCAATACTGTTAGAAACAGAGACTTATCGTTACCATGGTCATAGTATGAGCGACCCAGGCACTAGTTATCGTACACGTGAAGAAGTTCAGTCGATGAGGCGTGGACGAGATCCTATC ] [+] EMBL CD131650 [ TACGCGAAAGATTTCTATGGAGGTAAT GGCATCGTTGGCGCCCAGGTTCCTTTGGGTGTTGGAATAGCATTACGTATGAAACATCGTGGGGAAAAGTTTGTCTCTGTAACTCTT TATGGAGATGGTGCAGCTAACCAGGGACAGGTGTTTGAGGCCTTTAATATAGCGAAGTTATGGAATCTTCCTGTGATTTTCATTTGTGAAAACAATAAATATGGTATGGGTACATCTGTGCAGCGCTCTTCGGCCAATACTAGTTACTATACTCGTGGAGATTACATTCCTGGATTGTGGGTTGATGGTATGGATATACTTACTGTTAGAGAAGCCACACGTTTTGCTGCTGATTGGTGTCGTTCTGAC AAGGACCAAT ] [+] EMBL CD131579 [ TACGCGAAAGATTTCTATGGAGGTAAT GGCATCGTTGGCGCCCAGGTTCCTTTGGGTGTTGGAATAGCATTACGTATGAAACATCGTGGGGAAAAGTTTGTCTCTGTAACTCTT TATGGAGATGGTGCAGCTAACCAGGGACAGGTGTTTGAGGCCTTTAATATAGCGAAGTTATGGAATCTTCCTGTGATTTTCATTTGTGAAAACAATAAATATGGTATGGGTACATCTGTGCAGCGCTCTTCGGCCAATACTAGTTACTATACTCGTGGAGATTACATTCCTGGATTGTGGGTTGATGGTATGGATATACTTACTGTTAGAGAAGCCACACGTTTTGCTGCTGATTGGTGTCGTTCTGACAAAGGACCAATACTGTTAGAAACAGAGACTTATCGTCACCATGGTCATAGTATGAGCGACCCAGGCACTAGTTATCGTACACGTGAAGAAGTTCAGTCGATGAGGCGTGGACGAGATCCTATCGCTTTATTCCAGAAGAGCATTGTAGACAATGGGCTATGTACACAGGATGAGGTT ] [+] EMBL CD090337 [ TCGTGGGGAAAAGTTCGTCTCTGTAACTCTT TATGGAGATGGTGCAGCTAACCAGGGACAGGTGTTTGAGGCCTTTAATATAGCGAAGTTATGGAATCTTCCAGTGATTTTCATTTGTGACAACAATAAATATGGTATGGGTACATCTGTGCAGCGCTCTTCGGCCAATACTGGTTACTATACTCGTGGAGATTACATTCCTGGATNGTGGGTTGATGGTATGGATATACTTACTG ] [-] EMBL CD090406 [ gtGGGAAAAGTTTGTCTCTGT ACTCTTANNTGGAGATGGTGCAGCTAACCAGGGACAGGTGTTTGAGGCCTTTAATATAGCGAAGTTATGGAATCTTCCTGTGATTTTCATTTGTGAAAACAATAAATATGGTATGGGTACATCTGTGCAGCGCTCTTCGGCCAATACTAGTTACTATACTCGTGGAGATTACATTCCTGGATTGTGGGTTGATGGTATGGATATACTTACTGTTAGAGAAGCCACACGTTTTGCTGCTGATTGGTGTCGTTCTGACAAAGGACCAATACTGTTAGAAACAGAGACTTATCGTTCCCACAGTAATcata ] [-] EMBL CD074671 [ gTAGAGAAGCCACACGTTTTGCTGCTGATTGGTGTCGTTCTGACAAAGGACCAATACTGTTAGAAACAGAGACTTATCGTTACCATGGTCATAGTATGAGCGACCCAGGCACTAGTTATCGTACACGTGAAGAAGTTCAGTCGATGAGGCGTGGACGAGATCCTATCGCTTTATTCCAGAAGAGCATTGTAGACAATGGGCTATGTACACAGGATGAGGTTAAG GAGATCGAAAAAAGGGTCAGAATTGAAGTAGATAAAGAAGTAGAGAAGGCGATGAGCGACTCAGAACCACCACTAGAGACGATGTTTGGAAATATTTATCATGGGATACCTCCAAACTACAAGATTCGAGGTTGCGATCTAAAAACTTGGGGTTCACCATTTGTCACTAAGTGGTGAGGTAGCTTCACGTTTTCTGAATTTTGAAGAAGCTGGTTTTTATATACTATCTAATTTATTAGTCAGGCTTTTAGTATTTTCTAAGGTACGAATAATCACAAATATTTGATCCTTTCATAACAGCCTGTGTACCTATGAATAATTTTATAACTTATATCCTCTAAAATACAAAC ] [-] EMBL CD075077 [ GACCAATACTGTTAGAAACAGAGACTTATCGTTACCATGGTCATAGTATGAGCGACCCAGGCACTAGTTATCGTACACGTGAAGAAGTTCAGTCGATGAGGCGTGGACGAGATCCTATCGCTTTATTCCAGAAGAGCATTGTAGACAATGGGCTATGTACACAGGATGAGGTTAAG GAGATCGAAAAAAGGGTCCGAATTGAAGTAGATAAAGAAGTAGAGAAGGCGATGAGCGACTCAGAACCACCACTAGAGACGATGTTTGGAAATATTTATCATGGGATACCTCCAAACTACAAGATTCGAGGTTGCGATCTAAAAACTTGGGGTTCACCATTTGTCACTAAGTGGTGAGGTAGCTTCACGTTTTCTGAATTTTGAAGAAGCTGGTTATTATATACTATCTAATTTATTAGTCAGGCTTTTAGTATTTCCTAAGGTACGAATAATCACAAATATTTGATCCTTTCATAACAGCCTGTGTACCTATAAATAATTTTATAACTTATATCCTCTAAAATACAAAC ] [-] EMBL AI395292 [ ccaGTGGAGGAGTTCCGTCGATGAGGCGTGGACGAGAT CTATCGCTTTATTCCAGAGGAGCATTGTAGACAATGGGCTATGTACACAGGATGA GTTAAGTGAGATCGAAAAAAGAGTCCGAATTGAAGTAGATAAAGAAGTAGAGAAGGCGATGAGCGACTCAGAACCACCACTAGAGACGATGTTTGGAAATATTTATCATGGGATACCTCCAAACTACAAGATTCGAGGTTGCGATCTAAAAACTTGGGGTTCACCATTTGTCACTAAGTGGTGAGGTAGCTTCACGTTTTCTGAATTTTGAAGAAGCTGGTTATTATATACTATCTAATTTATTAGTCAGGCTTTTAGTATTTCCTAAGGTACGAATAATCACAAATATTTGATCCTTTCATAACAGCCTGTGTACCTATAAATAATTTTATAACTTATATCCTCTAAAATACAAACTTATACTATAAAAAAAAAAAAAAAAA ] [-] EMBL AI395033 [ tTAGACAATGGGCTATGTACACAGGATGAGGTTAAG GAGATCGAAAAAAGGGTCTGATGTGAAGTAGATAAAGAAGTAGAGAAGGCGATGAGCGACTCAGAACCACCACTAGAGACGATGTTTGGAAATATTTATCATGGGATACCTCCAAACTACAAGATTCGAGGTTGCGATCTAAAAACTTGGGGTTCACCATTTGTCACTAAGTGGTGAGGTAGCTTCACGTTTTCTGAATTTTGAAGAAGCTGGTTATTATATACTATCTAATTTATTAGTCAGGCTTTTAGTATTTTCTAAGGTACGAATAATCACAAATATTTGATCCTTTCATAACAGCCTGTGTACCTATAAATAATTTTATAACTTATATCCTCTAAAATACAAACTTATACTATAAAAAAAAAAAAAAAA ] [-] EMBL AI395531 [ ATAATTTTCATGGGATACCCCCAAACTACAAGATTCGAGGTTGCGATCTAAAAACTTGGGGTTCACCATTTGTCACTAAGTGGTGAGGTAGCTTCACGTTTTTTGAATTTTGAAGAAGCTGGTTATTATATACTATCTAATTTATTAGTCAGGCTTTTAGTATTTTCTAAGGTACGAATAATCACAAATATTTGATCCTTTCATAACAGCCTGTGTACCTATAAATAATTTTATAACTTATATCCTCTAAAATACAAACTTATCCTTTTAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_11044#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 819 fasta sequence [CCTCGAGGCCAAAAATTCGGCACGAGGTGTCTCTGTAACTCTTTATGGAGATGGTGCAGCTAACCAGGGACAGGTGTTTGAGGCCTTTAATATAGCGAAGTTATGGAATCTTCCTGTGATTTTCATTTGTGAAAACAATAAATATGGTATGGGTACATCTGTGCAGCGCTCTTCGGCCAATACTAGTTACTATACTCGTGGAGATTACATTCCTGGATTGTGGGTTGATGGTATGGATATACTTACTGTTAGAGAAGCCACACGTTTTGCTGCTGATTGGTGTCGTTCTGACAAAGGACCAATACTGTTAGAAACAGAGACTTATCGTTACCATGGTCATAGTATGAGCGACCCAGGCACTAGTTATCGTACACGTGAAGAAGTTCAGTCGATGAGGCGTGGACGAGATCCTATCGCTTTATTCCAGAAGAGCATTGTAGACAATGGGCTATGTACACAGGATGAGGTTAAGGAGATCGAAAAAAGGGTCCGAATTGAAGTAGATAAAGAAGTAGAGAAGGCGATGAGCGACTCAGAACCACCACTAGAGACGATGTTTGGAAATATTTATCATGGGATACCTCCAAACTACAAGATTCGAGGTTGCGATCTAAAAACTTGGGGTTCACCATTTGTCACTAAGTGGTGAGGTAGCTTCACGTTTTCTGAATTTTGAAGAAGCTGGTTATTATATACTATCTAATTTATTAGTCAGGCTNTTAGTATTTCCTAAGGTACGAANTATCACANATATTTGATCCTTTCATAACAGCCTGTGTACCTATAAATAATNTTATAAACTATATCCTCTAAAATACA] [+] EMBL CD081247 [CCTCGAGGCCAAAAATTCGGCACGAGGTGTCTCTGTAACTCTTTATGGAGATGGTGCAGCTAACCAGGGACAGGTGTTTGAGGCCTTTAATATAGCGAAGTTATGGAATCTTCCTGTGATTTTCATTTGTGAAAACAATAAATATGGTATGGGTACATCTGTGCAGCGCTCTTCGGCCAATACTAGTTACTATACTCGTGGAGATTACATTCCTGGATTGTGGGTTGATGGTATGGATATACTTACTGTTAGAGAAGCCACACGTTTTGCTGCTGATTGGTGTCGTTCTGACAAAGGACCAATACTGTTAGAAACAGAGACTTATCGTTACCATGGTCATAGTATGAGCGACCCAGGCACTAGTTATCGTACACGTGAAGAAGTTCAGTCGATGAGGCGTGGACGAGATCCTATCGCTTTATTCCAGAAGAGCATTGTAGACAATGGGCTATGTACACAGGATGAGGTTAAGGAGATCGAAAAAAGGGTCCGAATTGAAGTAGATAAAGAAGTAGAGAAGGCGATGAGCGACTCAGAACCACCACTAGAGACGATGTTTGGAAATATTTATCATGGGATACCTCCAAACTACAAGATTCGAGGTTGCGATCTAAAAACTTGGGGTTCACCATTTGTCACTAAGTGGTGAGGTAGCTTCACGTTTTCTGAATTTTGAAGAAGCTGGTTATTATATACTATCTAATTTATTAGTCAGGCTNTTAGTATTTCCTAAGGTACGAANTATCACANATATTTGATCCTTTCATAACAGCCTGTGTACCTATAAATAATNTTATAAACTATATCCTCTAAAATACA] [-] EMBL CD149680 [ tgGTCTCTGTAACTCTTTATGAAGATGGTGCAGCTAACAAGGGACAGGTGTTTGAGGCCTTTAATATAGCGAAGTTATGGAATCTTCCTGTGATTTTCATTTGTGAAAACAATAAATATGGTATGGGTACATCTGTGCAGCGCTCTTCGGCCAATACTAGTTACTATACTCGTGGAGATTACATTCCTGGATTGTGGGTTGATGGTATGGATATACTTACTGTTAGAGAAGCCACACGTTTTGCTGCTGATTGGTGTCGTTCTGACAAAGGACCAATACTGTTAGAAACAGAGACTTATCGTTACCATGGTCATAGTATGAGCGACCCAGGCACTAGTTATCGTACACGTGAAG ] [+] EMBL CD093992 [ ACTCTTTATGGAGATGGTGCAGCTAACCAGGGACAGGTGTTTGAGGCCTTTAATATAGCGAAGTTATGGAATCTTCCTGTGATTTTCATTTGTGAAAACAATAAATATGGTATGGGTACATCTGTGCAGCGCTCTTCGGCCAATACTAGTTACTATACTCGTGGAGATTACATTCCTGGATTGTGGGTTGATGGTATGGATATACTTACTGTTAGAGAAGCCACACGTTTTGCTGCTGATTGGTGTCGTTCTGACAAAGGACCAATACTGTTAGAAACAGAGACTTATCGTTACCATGGTCATAGTATGAGCGACCCAGGCACTAGTTATCGTACACGTGAAGAAGTTCAGTCGATGAGGCGTGGACGAGATCCTATCGCTTTATTCCAGAAGAGCATTGTAGACAATGGGCTATGTACACAGGATGAGGTTAAGGAGATCGAAAAAAGGGTCCGAATTGAAGTAGATAAAGAAGTAGAGAAGGCGATGAGCGACTCAGAACCACCACTAGAGACGATGTNTGGAAATATTTATCATGGGATACCTCC ] [+] EMBL CD170283 [ TCTTTATGGAGATGGTGCAGCTAACCAGGGACAGGTGTTTGAGGCCTTTAATATAGCGAAGTTATGGAATCTTCCTGTGATTTTCATTTGTGAAAACAATAAATATGGTATGGGT ] [-] EMBL CD090407 [ AGATGGTGCAGCTANCCAGGGACAGGTGTTTGAGGCCTTTAATATAGCGAAGTTATGGAATCTTCCTGTGATTTTCATTTGTGAAAACAATAAATATGGTATGGGTACATCTGTGCAGCGCTCTTCGGCCAATACTAGTTACTATACTCGTGGAGATTACATTCCTGGATTGTGGGTTGATGGTATGGATATACTTACTGTTAGAGAAGCCACACGTTTTGCTGCTGATTGGTGTCGTTCTGACAAAGGACCAATACTGTTAGAAACAGA ] [+] EMBL CD111143 [ TTGAGGCCTTTAATATAGCGAAGTTATGGAATCTTCCTGTGATTTTCATTTGTGAAAACAATAAATATGGTATGGGTACATCTGTGCAGCGCTCT ] [-] EMBL CD186581 [ GGAATCTTCCTGTGATTTTCATTTGTGAAAACAATAAATATGGTATGGGTACATCTGTGCAGCGCTCTTCGGCCAATACTAGTTACTATACTCGTGGAGATTGCATTCCTGGATTGTGGGTTGATGGTATGGATATACTTACTGTTAGAGAAGCCACACGTTTTGCTGCTGATTGGTGTCGTTCTGACAAAGGACCAATACTGTTAGAAACAGAGACTTATCGTTACCATGGTCATAGTATGAGCGACCCAGGCACTAGTTATCGTACACGTGAAGAAGTTCAGTCGATGAGGCGTGGACGAGATCCTATCGCTTTATTCCAGAAGAGCATTGTAGACAATGGGCTATGTACACAGGAGGA ] [-] EMBL CD130764 [ CATCTGTGCAGCGCTCTTCGGCCAATACTAGTTACTATACTCGTGGAGATTACATTCCTGGATTGTGGGTTGATGGTATGGATATACTTACTGTTAGAGAAGCCACACGTTTTGCTGCTGATTGGTGTCGTTCTGACAAAGGACCAATACTGTTAGAAACAGAGACTTATCGTTACCATGGTCATAGTATGAGCGACCCAGGCACTAGTTATCGTACACGTGAAGAAGTTCAGTCGATGAGGCGTGGACGAGATCCTATCGCTATATTCCAGAAGAGCATCGTAGACAATGGGCTATGTACACAGGATGAGGTTAAGGAGATCGAAAAAAGGGTCCGAATTGAAGTAGATAAAGAAGTAGAGAAGGCGATGAGCGACTCAGAACCACCACTAGAGACGATGTTTGGAAATATTTATCATGGGATACCTCCAAACTACAAGATTCGAGGTTGCGATCTAAAAACTTGGGGTTCACCATTTGTCACTAAGTGGTGAGGTAGCTTCACGTTTTC ] [+] EMBL CD131389 [ GTATGGATATACTTACTGTTAGAGAAGCCACACGTTTTGCTGCTGATTGGTGTCGTTCTGACAAAGAACCAATACTGTTAGAAACAGAGACTTATCGTTACCATGGTCATAGTATGAGCGACCCAGGCACTAGTTATCGTACACGTGAAGAAGTTCAGTCGATGAGGCGTGGACGAGATCCTATCGCTTTATTCCAGAAGAGCATTGTAGACAATGGGCTATGTACACAGGATGAGGTT ] [+] EMBL CD146404 [ AATACTGTTAGAAACAGAGACTTATCGTTACCATGGTCATAGTATGAGCGACCCAGGCACTAGTTATCGTACACGTGAAGAAGTTCAGTCGATGAGGCGTGGACGAGATCCTATCGCTTTATTCCAGAAGAGCATTGTAGACAATGGGCTATGTACACAGGATGAGGTTAAGGAGATCGAAAA ] [-] EMBL CD168435 [ GACCCAGGCATTAGTTATCGTACACGTGAAGAAGTTCAGTCGATGAGGCGTGGACGAGATCCTATCGCTTTATTCCAGAAGAGCATTGTAGACAATGGGCTATGTACACAGGATGAGGTTAAGGAGATCGAAAAAAGGGTCCGAATTGAAGTAGATAAAGAAGTAGAGAAGGCGATGAGCGACTCAGAA ] [-] EMBL CD094008 [ ATGAGCGACTCAGAACCACCACTAGAGACGATGTTTGGAAATATTTATCATGGGATACCTCCAAACTACAAGATTCGAGGTTGCGATCTAAAAACTTGGGGTTCACCATTTGTCACTAAGTGGTGAGGTAGCTTCACGTTTTC ] consensusID : consensus_11044#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence [AAAGTTTTCGTGGTTTCTGTCATCTATACTCGGGTCAGGAGCAGTTGCAGTCGGTATTGAAGTGCTTTACAGCCAGGCGATACTATTATCACTGCTTATCGCTGCCATGGCTTAACAATGACTCGCGGTGTTCCTATCCACAATATAGTTGCAGAACTCGCAGGAAGGAAGACTGGATGCACAAAAGGTTTAGGGGGCAGTATGCATCTTTACGCGAAAGATTTCTATGGAGGTAATGGCATCGTTGGCGCCCAGGTATATTTGTTTGTTTACCGTATAATATTTTGACTTCATGATTTCAATTAGGGATTCTTCATACACAACTTCTCAGCATTAATTTTCAGATTAAATGTATTTACGTTATGTAAAAAAAAAAA] [-] EMBL AI395607 [AAAGTTTTCGTGGTTTCTGTCATCTATACTCGGGTCAGGAGCAGTTGCAGTCGGTATTGAAGTGCTTTACAGCCAGGCGATACTATTATCACTGCTTATCGCTGCCATGGCTTAACAATGACTCGCGGTGTTCCTATCCACAATATAGTTGCAGAACTCGCAGGAAGGAAGACTGGATGCACAAAAGGTTTAGGGGGCAGTATGCATCTTTACGCGAAAGATTTCTATGGAGGTAATGGCATCGTTGGCGCCCAGGTATATTTGTTTGTTTACCGTATAATATTTTGACTTCATGATTTCAATTAGGGATTCTTCATACACAACTTCTCAGCATTAATTTTCAGATTAAATGTATTTACGTTATGTAAAAAAAAAAA] consensusID : consensus_11044#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence [TGAGGCGTGGACGAGATCCTATCGCTTTATTCCAGAAGAGCATTGTAAACAATGGGCTATGTACACAGGATGAGGTTAAGGAGATCGAAAAAAGGGTCCGAATTGAAGTAGATNAAGAAGTAGAGAAGGCGATGAGCGACTCATTANCCNCCNCTAGAGACGATGTTTGGAAATATTTATCATGGGATNCCTCCAAACTACANNATTCGAGGTTGCGATCTAAAAACTTGGGGTTCNCCNNTTGTCACTNAGTGGTGAGGTAACCTCNCGTTTTCTGANTTTTGACTAAANCTGGT] [+] EMBL AA559468 [TGAGGCGTGGACGAGATCCTATCGCTTTATTCCAGAAGAGCATTGTAAACAATGGGCTATGTACACAGGATGAGGTTAAGGAGATCGAAAAAAGGGTCCGAATTGAAGTAGATNAAGAAGTAGAGAAGGCGATGAGCGACTCATTANCCNCCNCTAGAGACGATGTTTGGAAATATTTATCATGGGATNCCTCCAAACTACANNATTCGAGGTTGCGATCTAAAAACTTGGGGTTCNCCNNTTGTCACTNAGTGGTGAGGTAACCTCNCGTTTTCTGANTTTTGACTAAANCTGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11044#1 ------------------------------------------------------------ consensus_11044#3 ------------------------------------------------------------ consensus_11044#0 TCTTGGTTCCTCCTGTTAGTCTAGTACTTTGCTATATAGAAAACTTCGAACATTGACGTA 60 consensus_11044#2 ------------------------------------------------------------ consensus_11044#1 ------------------------------------------------------------ consensus_11044#3 ------------------------------------------------------------ consensus_11044#0 TTACCTTTCTCGAAACTTCGTCTATATTAATCTTCTTCTCAAGATTTGTTTGAAGTGAAT 120 consensus_11044#2 ------------------------------------------------------------ consensus_11044#1 ------------------------------------------------------------ consensus_11044#3 ------------------------------------------------------------ consensus_11044#0 ATCAGGCTTTCATCAAACAATAAACACTCGATTCACATAATAAAAATGGCGTCAGGTCTT 180 consensus_11044#2 ------------------------------------------------------------ consensus_11044#1 ------------------------------------------------------------ consensus_11044#3 ------------------------------------------------------------ consensus_11044#0 GCTAGATCAAAGCTGATGAATTTTGTTTTTAGGTCTCCGTGGAACCCCGTGTCACTCATC 240 consensus_11044#2 ------------------------------------------------------------ consensus_11044#1 ------------------------------------------------------------ consensus_11044#3 ------------------------------------------------------------ consensus_11044#0 TATCGTCCTGAGTGTTCCTCCGCAAAATTTAGTCTTTCTGACTACAAGTCTTTTAAGTTA 300 consensus_11044#2 ------------------------------------------------------------ consensus_11044#1 ------------------------------------------------------------ consensus_11044#3 ------------------------------------------------------------ consensus_11044#0 GATTCCACACCAGCAAATGAAACTGAATGCAGTCGTGATGATGCACTTAGATACCTCGAG 360 consensus_11044#2 ------------------------------------------------------------ consensus_11044#1 ------------------------------------------------------------ consensus_11044#3 ------------------------------------------------------------ consensus_11044#0 AGTCTTCACCGTATTCGTAGAATGGAAACGGCATTAGGTAACATGTATAAAGAAAAGCTT 420 consensus_11044#2 ------------------------------------------------------------ consensus_11044#1 ------------------------------------------------------------ consensus_11044#3 ------------------------------------------------------------ consensus_11044#0 ATTCGTGGTTTCTGTCATCTATACTCGGGTCAGGAAGCAGTTGCAGTCGGTATTGAAGCT 480 consensus_11044#2 ------------------------------------------------------------ consensus_11044#1 ------------------------------------------------------------ consensus_11044#3 ------------------------------------------------------------ consensus_11044#0 GCTTTACAGCCAGGCGATACTATTATCACTGCTTATCGCTGCCATGGCTTTACAATGACT 540 consensus_11044#2 ------------------------------------------------------------ consensus_11044#1 ------------------------------------------------------------ consensus_11044#3 ------------------------------------------------------------ consensus_11044#0 CGCGGTGTTCCTATCCACAATATAGTTGCAGAACTCGCAGGAAGGAAGACTGGATGCACA 600 consensus_11044#2 ------------------------------------------------------------ consensus_11044#1 ------------------------------------------------------------ consensus_11044#3 ------------------------------------------------------------ consensus_11044#0 AAAGGTTTAGGGGGCAGTATGCATCTTTACGCGAAAGATTTCTATGGAGGTAATGGCATC 660 consensus_11044#2 ------------------------------------------------------------ consensus_11044#1 --------------------------------------CCTCGAGGCCAAAAATTCGGCA 22 consensus_11044#3 ------------------------------------------------------------ consensus_11044#0 GTTGGCGCCCAGGTTCCTTTGGGTGTTGGAATAGCATTACGTATGAAACATCGTGGGGAA 720 consensus_11044#2 ------------------------------------------------------------ consensus_11044#1 CGAGGTGTCTCTGTAACTCTTTATGGAGATGGTGCAGCTAACCAGGGACAGGTGTTTGAG 82 consensus_11044#3 ------------------------------------------------------------ consensus_11044#0 AAGTTTGTCTCTGTAACTCTTTATGGAGATGGTGCAGCTAACCAGGGACAGGTGTTTGAG 780 consensus_11044#2 ------------------------------------------------------------ consensus_11044#1 GCCTTTAATATAGCGAAGTTATGGAATCTTCCTGTGATTTTCATTTGTGAAAACAATAAA 142 consensus_11044#3 ------------------------------------------------------------ consensus_11044#0 GCCTTTAATATAGCGAAGTTATGGAATCTTCCTGTGATTTTCATTTGTGAAAACAATAAA 840 consensus_11044#2 ------------------------------------------------------------ consensus_11044#1 TATGGTATGGGTACATCTGTGCAGCGCTCTTCGGCCAATACTAGTTACTATACTCGTGGA 202 consensus_11044#3 ------------------------------------------------------------ consensus_11044#0 TATGGTATGGGTACATCTGTGCAGCGCTCTTCGGCCAATACTAGTTACTATACTCGTGGA 900 consensus_11044#2 ------------------------------------------------------------ consensus_11044#1 GATTACATTCCTGGATTGTGGGTTGATGGTATGGATATACTTACTGTTAGAGAAGCCACA 262 consensus_11044#3 ------------------------------------------------------------ consensus_11044#0 GATTACATTCCTGGATTGTGGGTTGATGGTATGGATATACTTACTGTTAGAGAAGCCACA 960 consensus_11044#2 ------------------------------------------------------------ consensus_11044#1 CGTTTTGCTGCTGATTGGTGTCGTTCTGACAAAGGACCAATACTGTTAGAAACAGAGACT 322 consensus_11044#3 ------------------------------------------------------------ consensus_11044#0 CGTTTTGCTGCTGATTGGTGTCGTTCTGACAAAGGACCAATACTGTTAGAAACAGAGACT 1020 consensus_11044#2 -------------------------------------------------------AAAGT 5 consensus_11044#1 TATCGTTACCATGGTCATAGTATGAGCGACCCAGGCACTAGTTATCGTACACGTGAAGAA 382 consensus_11044#3 ------------------------------------------------------------ consensus_11044#0 TATCGTTACCATGGTCATAGTATGAGCGACCCAGGCACTAGTTATCGTACACGTGAAGAA 1080 consensus_11044#2 TTTCGTGGTTTCTGTCATC-TATACTCGGGTCAGGAGC-AGTTGCAGTCGGTATTGAAGT 63 consensus_11044#1 GTTCAGTCGATGAGGCGTGGACGAGATC-CTATCGCTTTATTCCAGAAGAGCATTGTAGA 441 consensus_11044#3 ----------TGAGGCGTGGACGAGATC-CTATCGCTTTATTCCAGAAGAGCATTGTAAA 49 consensus_11044#0 GTTCAGTCGATGAGGCGTGGACGAGATC-CTATCGCTTTATTCCAGAAGAGCATTGTAGA 1139 consensus_11044#2 GCTTTA-CAGCCAGGCGATACTATTATCACTGCTTATCGCTGCCATGGCTTAACAATGAC 122 ***** *** ** * * *** * * consensus_11044#1 CAATGGGCTATGTACACAGGATGAGGTTAAGGAGATCGAAAAAAGGGTCCGAATTGAAGT 501 consensus_11044#3 CAATGGGCTATGTACACAGGATGAGGTTAAGGAGATCGAAAAAAGGGTCCGAATTGAAGT 109 consensus_11044#0 CAATGGGCTATGTACACAGGATGAGGTTAAGGAGATCGAAAAAAGGGTCCGAATTGAAGT 1199 consensus_11044#2 TCGCGGTGTTCCTATCCACAATATAGTTGCAGAACTCGCAGGAAGGAA--GACTGGATGC 180 ** * ** ** ** *** ** *** * **** ** * ** * consensus_11044#1 AGATAAAGAAGTAGAGAAGGCGATGAGCGACTCAG-AACCACCACTAGAGACGATGTTTG 560 consensus_11044#3 AGATNAAGAAGTAGAGAAGGCGATGAGCGACTCATTANCCNCCNCTAGAGACGATGTTTG 169 consensus_11044#0 AGATAAAGAAGTAGAGAAGGCGATGAGCGACTCAG-AACCACCACTAGAGACGATGTTTG 1258 consensus_11044#2 A---CAAAAGGTTTAGGGGGCAGTATGCATCTTTA-------CGCGAAAGATT-TCTATG 229 * ** * ** ** *** * ** ** * * * *** * * ** consensus_11044#1 GAAATATT--TATCATGGGATACCTCCAAACTACAAGATTCGAGGTTGCGATCTAAAAAC 618 consensus_11044#3 GAAATATT--TATCATGGGATNCCTCCAAACTACANNATTCGAGGTTGCGATCTAAAAAC 227 consensus_11044#0 GAAATATT--TATCATGGGATACCTCCAAACTACAAGATTCGAGGTTGCGATCTAAAAAC 1316 consensus_11044#2 GAGGTAATGGCATCGTTGGCGCCCAGGTATATTTGTTTGTTTACCGTATAATATTTTGAC 289 ** ** * *** * ** ** * * * * * ** * ** consensus_11044#1 TTGGGGTTCACCATTTGTCACTAAGTGGTGAGGTAGCTTCACGTTTTCTGAATTTTGAA- 677 consensus_11044#3 TTGGGGTTCNCCNNTTGTCACTNAGTGGTGAGGTAACCTCNCGTTTTCTGANTTTTGACT 287 consensus_11044#0 TTGGGGTTCACCATTTGTCACTAAGTGGTGAGGTAGCTTCACGTTTTCTGAATTTTGAA- 1375 consensus_11044#2 TTCATGATTTCAATTAGGGATTCTTCAT--ACACAACTTCTCAGCATTAATTTTCAGATT 347 ** * * * * * * * * * * ** * * ** ** consensus_11044#1 GAAGCTGGTTATTATATACTATCTAATTTATTAGTCAGGCTNTTAGTATTTCCTAAGGTA 737 consensus_11044#3 AAANCTGGT--------------------------------------------------- 296 consensus_11044#0 GAAGCTGGTTATTATATACTATCTAATTTATTAGTCAGGCTTTTAGTATTTTCTAAGGTA 1435 consensus_11044#2 AAATGTATTTACGTTATGTAAAAAAAAAAA------------------------------ 377 ** * * consensus_11044#1 CGAANTATCACANATATTTGATCCTTTCATAACAGCCTGTGTACCTATAAATAATNTTAT 797 consensus_11044#3 ------------------------------------------------------------ consensus_11044#0 CGAATAATCACAAATATTTGATCCTTTCATAACAGCCTGTGTACCTATAAATAATTTTAT 1495 consensus_11044#2 ------------------------------------------------------------ consensus_11044#1 AAACTATATCCTCTAAAATACA------------------------------------ 819 consensus_11044#3 ---------------------------------------------------------- consensus_11044#0 AACTTATATCCTCTAAAATACAAACTTATACTATAAAAAAAAAAAAAAAAAAAAAAAA 1553 consensus_11044#2 ---------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||