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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11047#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 26 consensus length = 1235 fasta sequence
[CTCAAGGACATTCGTAAATGAATTGTGCCAGATGCTTCTCGTCTCGATCCCAATATTGTCGTAATCTGACACTCGTGCTATTACTGATTGTTGTCTATTGCTCTCCTTAGCAATTATAAGTGCGTTGCTGGGTCGTCGACTCGCCGTTTCTTCCGTCTTTTCCAGCCCTCACGCTACTTTGCATGCTTCCTTAGTCGGCACAGTACCTTCTGGCTCAAACCGCTACAATCGTCTCTAAGTCAGAAAGATAA-GAATCCCATTTATAAAAC-TTGGCAAATTGTTTTGCGTGATGGAAGTCATAACTATACCTGCTTTGTCGGATAACTACATGTATGTAGTTATCGATAGGGCGTCAAATATATGCGCAGTTGTGGATCCAGTGGAACCTGATAAAATTTTGAGTGCAGTCACGCAGCGCGGTTTGCGACTTGAATCCATATTGACAACTCACCATCACTTGGACCACGCTGGAGGAAACCTCGATCTTGTAACTAAATGCAGGAAACAAGGCTTA-GAGGGACTAAAGGTGTACGGAGGAGATGATCGTATTGGTGGTTTGACTGATACTGTGTCGCACGGATATAAAATAAAGATTGGTAGCAACCTCAACGTTTATTGCTTGGCTACACCATGTCATACTACTGGT-CATATATGTTATCTGGTTACCGAGGAAAACAGTACCAAGGA-A-GGAGCTGTATTTACTGGCG-ACACGTTGTTCCTT-G-GGGGCTGTGGAAGATTTTTTGAAGGGACTGCTGAACAAATGTTTA-A-GGCACTTATTGAAG-TTCTTTCCAAGTTACC-AACAACAACAAAAGTCTATTGT-GGGCACGAATATACT-GT-AAAAAATCTTGAATTCGGTTTAACTGTTGAGCCAAAAAATGAAGCGCTTAAACATCGGTTAG-AAGCCGTAAAACGTTTACGTGCGTCTAATCAAGCAAGTGTTCCCGGTACAATTGGGGAGGAATTAGCAACCAATCCTTTCATGCGTGTTTCTGAACCAGATGTGCTTGCACATGCGAAAACTACAGATCCCATCAAAGCCATGAAGACAATTCGTGAAGAAAAAGATCGCTTTTAGATTTAAAGGTCATCTGTCTTAAACCAGTGATGTATTACAATTTCTTCAATGAAGTTAGTATGCCCTTTTACATTCTTATCTTGACCCTGAACATAGATGAAACATATCTATTGAATTAATCAAATAAAACTGTTACTAATGAAAAAAAAAAAAAAAAAAA]
[+] EMBL CD111656 [CTCAAGGACATTCGTAAATGAATTGTGCCAGATGCTTCTCGTCTCGATCCCAATATTGTCGTAATCTGACACTCGTGCTATTACTGATTGTTGTCTATTGCTCTCCTTAGC ATTATAAGTGCGTTGCTGGGTC ]
[+] EMBL CD111636 [ CGTAAATGAATTGTGCCAGATGCTTCTCGTCTCGATCCCAATATTGTCGTAATCTGACACTCGTGCTATTACTGATTGTTGTCTATTGCTCTCC ]
[+] EMBL CD188333 [ TTGGGCCAGCTGCTTCTCGTCTCGATCCCAATATTGTCGTAATCTGACACTCGTGCTATTACTGATTGTTGTCTATTGCTCTCCTTAGCAATTATAAGTGCGTTGCTGGGTCGTCGACTCGCCGTTTCTTCCGTCTTTTCCAGCCCTCACGCTACTTTGCATGCTTCCTTAGTCGGCACAGTACCTTCTGGCTCAAACCGCTACAATCGTCTCTAAGTCAGAAAGATAA GAATCCCATTTATAAAAC TTGGCAAATTGTTTTGCGTGATGGAAGTCATAACTATACCTGCTTTGTCGGATAACTACATGTATGTAGTTATCGATAGGGCGTCAAATATATGCGCAGTTGTGGATCCAGTGGAACCTGATAAAATTTTGAGTGCAGTCACGCAGCGCGGTTTGCGACTTGAATCCATATTGACAACTCACCATCACTT ]
[+] EMBL CD111803 [ TTGTCGTAATCTGACACTCGTGCTATTACTGATTGTTGTCTATTGCTCTCCTTAGTAATTATAAGTGCGTTGCTGGGTCGTCGACTCGCCGTTTCTTCCGTCTTTTCCAGCCCTCACGCTACTTTGCATGCTTCCTTAGTCGGCACAGTACCTTCTGGCTCAAACCGCTACAATCGTCTCTAAGTCAGAAAGATAA GAATCCCATTTATAAAAC TTGGCAAATTGTTTTGCGTGATGGAAGTCATAACTATACCTGCTTTGTCGGATAACTACATGTATGTAGTTATCGATAGGGCGTCAAATATATGCGCAGNTGTGG ]
[-] EMBL CD202770 [ GCATGCTTCCTTAGTCGGCACAGTACCTTCTGGCTCAAACCGCTACAATCGTCTCTAAGTCAGAAAGATAA GAATCCCATTTATAAAAC TTGGCAAATTGTTTTGCGTGATGGAAGTCATAACTATACCTGCTTTGTCGGATAACTACATGTATGTAGTTATCGATAGGGCGTCAAATATATGCGCAGTT ]
[-] EMBL CD071230 [ AGTACCTTCTGGCTCAAACCGCTACAATCGTCTCTAAGTCAGAAAGATAA GAATCCCATTTATAAAAC TTGGCAAATTGTTTTGCGTGATGGAAGTCATAACTATACCTGCCTTGTCGGATAACTACATGTATGTAGTTATCGATAGGGCGTCAAATATATGCGCAGTTGTGGATCCAGTGGAACCTGATAAAATTTTGAGTGCAGTCACGCAGCGCGGTTTGCGACTTGAATCCATATTGACAACTCACCATCACTTGGACCACGCTGGAGGAAACCTCGATCTTGTAACTAAATGCAGGAAACAAGGCTTA GAGGGACTAAAGGTGTACGGAGGAGATGATCGTATTGGTGGTTTGACTGATACTGTGTCGCACGGATATAAAATAAAGATTGGTAGCAACCTCAACGTTTATTGCTTGGCTACACCATGTCATACTACTGGT CATATATGTTA ]
[+] EMBL CD123874 [ CAAACCGCTACAATCGTCTCTAAGTCAGAAAGATAA GAATCCCATTTATAAAAC TTGGCAAATTGTTTTGCGTGATGGAAGTCATAACTATACCTGCTTTGTCGGATAACTACATGTATGTAGTTATCGATAGGGCGTCAAATATATGCGCAGTTGTGGATCCAGTGGAACCTGATAAAATTTTGAGTGCAGTCACGCAGCGCGGTTTGCGACTTGAATCCATATTGACAACTCACCATCACTTGGACCACGCTGGAGGAAACCTCGATCTTGTAACTAAATGCANGAAACAAGGCTTANNAGGGACTAAA GCGTACGGAGGAGATGATCGTATTGGTGGTTTGACTGATACTGTGTCGCACGGATATAAAATAAAGATGGGTAGCAACCTCAACGTTTATT CTTGGCTACACCATGTCATACTACTGGT CATATATGTNATCTGGGTACCGAGGAAAACAGTACCNAGGA AGGGAGCTGTA TTACTGGCG ACACGTTGTTCTTT GNGGGGCTGT GAAGATTTTTTGAAGGGACTGCTGAACAAATGTTNA ANGGCACTTATTGAAA GTCTTTCCAAGTTACCAAACAAC ACAAA ]
[-] EMBL CD149682 [ AGAAAGATAA GAATCCCATTTATAAAAC TTGGCAAATTGTTTTGCGTGATGGAAGTCATAACTATACCTGCTTTGTCGGATAACTACATGTATGTAGTTATCGATAGGGCGTCAAATATATGCGCAGTTGTGGATCCAGTGGAACCTGATAAAATTTTGAGTGCAGTCACGCAGCGCGGTTTGCGACTTGAATCCATATTGACAACTCACCATCACTTGGACCACGCTGGAGGAAACCTCGATCTTGTAACTAAATGCAGGAAACAAGGCTTA GAGGGACTAAAGGTGTACGGAGGAGATGATCGTATTGGTGGTTTGACTGATACTGTGTCGCACGGATATAAAATAAAGATTGGTAGCAACCTCAACGTTTATTGCTTGGCTACACCATGTCATACTACTGGT CATATATGTTA ]
[-] EMBL CD071295 [ GAAAGATAAGGAATCCCATTTATAAAACTTTGGCAAATTGTTTTGCGTGATGGAAGTCATAACTATACCTGCTTTGTCGGATAACTACATGTATGTAGTTATCGATAGGGCGTCAAATATATGCGCAGTTGTGGATCCAGTGGAACCTGATAAAATTTTGAGTGCAGTCACGCAGCGCGGTTTGCGACTTGAATCCATATTGACAACTCACCATCACTTGGACCACGCTGGAGGAAACCTCGATCTTGTAACTAAATGCAGGAAACAAGGCTTA GAGGGAATAAAGGTGTACGGAGGAGATGATCGTATTGGTGGTTTGACTGATACTGTGTCGCACGGATATAAAATAAAGATTGGTAGCAACCTCAACGTTTATTGCTTGGCTACACCATGTCATACTACTGGTACATATATGTTA ]
[-] EMBL CD071253 [ CATTTATAAAAC TTGGCAAATTGTTTTGCGTGATGGAAGTCATAACTATACCTGCTTTGTCGGATAACTACATGTATGTAGTTATCGATAGGGCGTCAAATATATGCGCAGTTGTGGATCCAGTGGAACCTGATAAAATTTTGAGTGCAGTCACGCAGCGCGGTTTGCGACTTGAATCCATATTGACAACTCACCATCACTTGGACCACGCTGGAGGAAACCTCGATCTTGTAACTAAATGCAGGAAACAAGGCTTA GAGGGACTAAAGGTGTACGGAGGAGATGATCGTATTGGTGGTTTGACTGATACTGTGTCGCACGGATATAAAATAAAGATTGGTAGCAACCTCAACGTTTATTGCTTGGCTACACCATGTCATACTACTGGT CATATATGTTA ]
[-] EMBL CD149897 [ CTTTGTCGGATAACTACATGTATGTAGTTATCGATAGGGCGTCAAATATATGCGCAGTTGTGGATCCAGTGGAACCTGATAAAATTTTGAGTGCAGTCACGCAGCGCGGTTTGCGACTTGAATCCATATTGACAACTCACCATCACTTGGACCACGCTGGAGGAAACCTCGATCTTGTAACTAAATGCAGGAAACAAGGCTTA GAGGGACTAAAGGTGTACGGAGGAGATGATCGTATTGGTGGTTTGACTGATACTGTGTCGCACGGATATAAAATAAAGATTGGTAGCAACCTCAACGTTTATTGCTTGGCTACACCATGTCATACTACTGGT CATATATGTTA ]
[-] EMBL CD149864 [ GTAGTTATCGATAGGGCGTCAAATATATGCGCAGTTGTGGATCCAGTGGAACCTGATAAAATTTTGAGTGCAGTCACGCAGCGCGGTTTGCGACTTGAATCCATATTGACAACTCACCATCACTTGGACCACGCTGGAGGAAACCTCGATCTTGTAACTAAATGCAGGAAACAAGGCTTA GAGGGACTAAAGGTGTACGGAGGAGATGATCGTATTGGTGGTTTGACTGATACTGTGTCGCACGGATATAAAATAAAGATTGGTAGCAACCTCAACGTTTATTGCTTGGCTACACCATGTCATACTACTGGT CATATATGTTATCTGGTTACCGAGGAgca ]
[-] EMBL CD202399 [ GGTTTGCGACTTGAATCCATATTGACAACTCACCATCACTTGGACCACGCTGGAGGAAACCTCGATCTTGTAACTAAATGCAGGAAACAAGGCTCA GAGGGACTAAAGGTGTACGGAGGAGATGATCGTATTGGTGGTTTGACTGATACTGTGTCGCACGGATATAAAATAAAGATTGGTAGCAACCTCAACGTTTATTGCTTGGCTACACCATGTCATACTACTGGT CATATATGTTATCTGGTTACCGAGGAAAACAGTGCCAAGGA A GGAGCTGTATTTACTGGCG ACACGTTGTTCCTT G GGGGCTGAGGAAGATTTTTTTAAGGGACTGCTGTACAAATGTTTATA GGCGCTTATT AAGATTCTTTCCA ]
[-] EMBL CD071293 [ ATCCATATTGACAACTCACCATCACTTGGACCACGCTGGAGGAAACCTCGATCTTGTAACTAAATGCAGGAAACAAGGCTTA GAGGGACTAAAGGTGTACGGAGGAGATGATCGTATTGGTGGTTTGACTGATACTGTGTCGCACGGATATAAAATAAAGATTGGTAGCAACCTCAACGTTTATTGCTTGGCTACACCATGTCATACTACTGGT CATATATGTTA ]
[+] EMBL CD096103 [ ATTGGTGGTTTGACTGATACTGTGTCGCACGGATATAAAATAAAGATTGGTAGCAACCTCAACGTTTATTGCTTGGCTACACCATGTCATACTACTGGT CATATATGTTATCTGGTTACCGAGGAAAACAGTACCAAGGA A GGAGCTGTATTTACTGGCG ACACATTGTTCCTT G GGGGCTGTGGAAGATTTTTTGAAGGGACTGCTGAACAAATGTTTA A GGCACTTATTGAAG TTCTTTCCAAGTTACC AACAACAACAAAAGTCTATTGT GGGCACGAATATACT GT AAAAAATCTTGAATTCGGTTTAACTGTTGAGCCAAAAAATGAAGCGCTTAAACATCGGTTAG AAGCCGTAAAACGTTTACGTGCGTCTAATCAAGCAAGTGTTCCCGGTACAATTGGGGAGGAAT ]
[-] EMBL CD124515 [ acgtaccCAACCTCAACGTTTATTGCTTGGCTACACCATGTCATACTACTGGT CATATATGTTATCTGGTTACCGAGGAAAACAGTACCAAGGA A GGAGCTGTATTTACTGGCG ACACGTTGTTCCTT G GGGGCTGTGGAAGATTTTTTGAAGGGtacgtc ]
[-] EMBL BG931377 [ ATACTACTGGT CATATATGTTATCTGGTTACCGAGGAAAACAGTACCAAGGA A GGAGCTGTATTTACTGGCG ACACGTTGTTCCTT G GGGGCTGTGGAAGATTTTTTGAAGGGACTGCTGAACAAATGTTTA A GGCACTTATTGAAG TTCTTTCCAAGTTACC AACAACAACAAAAGTCTATTGT GGGCACGAATATACT GT A ]
[-] EMBL AI394778 [ GTACCAAGGAGG GGAG TGTATTTACTGGCGAACACGTTTTTCCTTGG GGGGCTGTGGGAGATTTTTTGAAGNGACTGCTGAACAAATGTTTA A GGCACTTATTGAAG TTCTTTCCAAGTTACC AACAACAACAAAAGTTTATTGT GGGCACGAATATACT GT AAAAAATCTTGAATTCGGTTTAACTGTTGAGCCAAAAAATGAAGCGCTTAAACATCGGTTAG AAGCCGTAAAACGTTTACGTGCGTCTAATCAAGCAAGTGTTCCCGGTACAATTGGGGAGGAATTAGCAACCAATCCTTTCATGCGTGTTTCTGAACCAGATGTGCTTGCACATGCGAAAACTACAGATCCCATCAAAGCCATGAAGACAATTCGTGAAGAAAAAGATCGCTTTTAGATTTAAAGGTCATCTGTCTTAAACCAGTGATGTATTACAATTTCTTCAATGAAGTTAGTATGCCCTTTTACATTCTTATCTTGACCCTGAACATAGATGAAACATATCTATTGAATTAATCAAATAAAACTGTTACTAATGGAAAAAAAAAAAAAA ]
[-] EMBL CD142154 [ CTGTATTTACTGGCG ACACGTTGTTCCTT G GGGGCTGTGGAAGATTTTTTGAAGGGACTGCTGAACAAATGTTTA A GGCACTTATTGAAG TTCTTTCCAAGTTACC AACAACAACAAAAG ]
[+] EMBL CD188644 [ GTTCCTT G GGGGCTGTGGAAGATTTTTTGAAGGGACTGCTGAACAAATGTTTA A GGCACTTATTGAAG TTCTTTCCAAGTTACC AACAACAACAAAAGTCTATTGT GGGCACGAATATACT GT AAAAAATCTTGAATTCGGTTTAACTGTTGAGCCAAAAAATGAAGCGCTTAAACATCGGTTAG AAGCCGTAAAACGTTTACGTGCGTCTAATCAAGCAAGTGTTCCCGGTACAATTGGGGAGGAATTAGCAACCAATCCTTTCATGCGTGTTTCTGAACCAGATGTGCTTGCACATGCGAAAACTACAGATCCCATCAAAGCCATGAAGACAATTCGTGAAGAAAAAGATCGCTTTTAGATTTAAAGGTCATCTGTCTTANACCAGTGATGTATTAC TTCTTCAATGAAGTTAGTATGCCCTTTTACATTC ]
[-] EMBL AI395036 [ gTCTTCCCAAGTTACC AACAACACCAAAAGT TATTGTGGGGCACG AT TACT GT AAAAAATCTTGAATTCGGTTTAACTGTTGAGCCAAAAAATGAAGCGCTTAAACATCGGTTAG AAGCCGTAAAACGTTTACGTGCGTCTAATCAAGCAAGTGTTCCCGGTACAATTGGGGAGGAATTAGCAACCAATCCTTTCATGCGTGTTTCTGAACCAGATGTGCTTGCACATGCGAAAACTACAGATCCCATCAAAGCCATGAAGACAATTCGTGAAGAAAAAGATCGCTTTTAGATTTAAAGGTCATCTGTCTTAAACCAGTGATGTATTACAATTTCTTCAATGAAGTTAGTATGCCCTTTTACATTCTTATCTTGACCCTGAACATAGATGAAACATATCTATTGAATTAATCAAATAAAACTGTTACTAATGAAAAAAAAAAAAAAAA ]
[-] EMBL AI395437 [ agGATTATTCTGGT AAAAAATCCTGAATTCGGTTAAACTGTTGACCCAAAAAATGAAGCGCTTAAACATCGGTTAG AAGCCGTAAAACGTTTACGTGCGTCTAATCAAGCAAGTGTTCCCGGTACAATTGGGGAGGAATTAGCAACCAATCCTTTCATGCGTGTTTCTGAACCAGATGTGCTTGCACATGCGAAAACTACAGATCCCATCAAAGCCATGAAGACAATTCGTGAAGAAAAAGATCGCTTTTAGATTTAAAGGTCATCTGTCTTAAACCAGTGATGTATTACAATTTCTTCAATGAAGTTAGTATGCCCTTTTACATTCTTATCTTGACCCTGAACATAGATGAAACATATCTATTGAATTAATCAAATAAAACTGTTACTAATAAAAAAAAAAAAAAAAAAAA]
[-] EMBL AI395426 [ gcggaAATATACT GT AAAAAATCTTGAATTCGGTTAAACTGTTGAGCCAAAAAATGAAGCGCTTAAACATCGGTTAG AAGCCGTAAAACGTTTACGTGCGTCTAATCAAGCAAGTGTTCCCGGTACAATTGGGGAGGAATTAGCAACCAATCCTTTCATGCGTGTTTCTGAACCAGATGTGCTTGCACATGCGAAAACTACAGATCCCATCAAAGCCATGAAGACAATTCGTGAAGAAAAAGATCGCTTTTAGATTTAAAGGTCATCTGTCTTAAACCAGTGATGTATTACAATTTCTTCAATGAAGTTAGTATGCCCTTTTACATTCTTATCTTGACCCTGAACATAGATGAAACATATCTATTGAATTAATCAAATAAAACTGTTACTAATGAAAAAAAAAAAAAAAAAA ]
[-] EMBL AI395070 [ ACT GTAAAAAAATCTTGAATTCGGTTTAACTGTTGAGCCAAAAACTGAAGCGCTTAAACATCGGTTGG AACCGGTAAAACGTTTACGTGCGTCTAATCAAGCAAGTGTTCCCGGTACAATTGGGGAGGAATTAGCAACCAATCCTTTCATGCGTGTTTCTGAACCAGATGTGCTTGCACATGCGAAAACTACAGATCCCATCAAAGCCATGAAGACAATTCGTGAAGAAAAAGATCGCTTTTAGATTTAAAGGTCATCTGTCTTAAACCAGTGATGTATTACAATTTCTTCAATGAAGTTAGTATGCCCTTTTACATTCTTATCTTGACCCTGAACATAGATGAAACATATCTATTGAATTAATCAAATAAAACTGTTACTAATGAAAAAAAAAAAAAAAA ]
[+] EMBL AA559723 [ CAAAAAATGAAGCGCTTAAACATCGGTTAGAAAGCCGTAAAACGTTTACGTGCGTCTAATCAAGCAAGTGTTCCCGGTACAATTGGGGAGGAATTAGCAACCAATCCTTTCATGCGTGTTTCTGAACCAGATGTGCTTGCACATGCGAAAACTACAGATCCCATCAAAGCCATGAAGACAATTCGTGAAGAAAAAGATCGCTTTTAGATTTAANGGTCATCTGTCTTAAACCAGTGATGTATTACAATTTCTTCAATGAAGTTAGTATGCCCTTTTACATTCTTATCTTGACCCTGAACAT ]
[-] EMBL AI395106 [ GTGTTCCCGGTACAATTGGGGAGGAA TAGCAACC ATCCTTTCATGCGTGTTTCTGAACCAGATGTGCTTGCACATGCGAAAACTACAGATCCCATCAAAGCCATGAAGACAATTCGTGAAGAAAAAGATCGCTTTTAGATTTAAAGGTCATCTGTCTTAAACCAGTGATGTATTACAATTTCTTCAATGAAGTTAGTATGCCCTTTTACATTCTTATCTTGACCCTGAACATAGATGAAACATATCTATTGAATTAATCAAATAAAACTGTTACTAATGAAAAAAAAAAAAAAAA ]
consensusID : consensus_11047#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 886 fasta sequence
[GGTTTTACTCTTGTGATTTGTTGCATGTCGAGTGAACAGTTGCAGGATCCAGTGGAACCTGATAAAATTTTGAGTGCAGTCACGCAGCGCGGTTTGCGACTTGAATCCATATTGACAACTCACCATCACTTGGACCACGCTGGAGGAAACCTCGATCTTGTAACTAAATGCAGGAAACAAGGCTTAGAGGGACTAAAGGTGTACGGAGGAGATGATCGTATTGGTGGTTTGACTGATACTGTGTCGCACGGATATAAATNAAGATTGGTAGCAACCTCAACGTTTATTGCTTGGCTACACCATCGTCATACTACTGGTCATATATGTTATCTGGTTACCGAGGAAAACAGTACCAAGGAAGGAGCTGTATTTACTGGCGACACGTTGTTCCTTGGGGGCTGTGGAAGATTTTTTGAAGGGACTGCTGAACAAATGTTTAAGGCACTTATCGAAGTTCTTTCCAAGTTACCAACAACAACAAAAGTCTATTGTGGGCACGAATATACTGTAAAAAATCTTGAATTCGGCTTAACTGTTGAGCCAAAAAATGAAGCGCTTAAACATCGGCTAGAAGCCGTAAAACGTCTACGTGCGTCTAATCAAGCAAGTGTTCCCGGTACAATTGGGGAGGAATTAGCAACCAATCCTCTCATGCGTGTTTCTGAACCAGATGTGCTTGCACATGCGAAAACTACAGATCCCATCAAAGCCATGAAGACAATTCGTGAAGAAAAAGATCGCTTTTAGATTTAAAGGTCATCTGTCTTAAACCAGTGATGTATTACAATTTCTTCAATGAAGTTAGTATGCCCTTTTACATTCTTATCTTGACCCTGTTCATAGATGAAACATATCTATTGAATTAATCAATTAAAACTGTTACTAA]
[+] EMBL SM30264 [GGTTTTACTCTTGTGATTTGTTGCATGTCGAGTGAACAGTTGCAGGATCCAGTGGAACCTGATAAAATTTTGAGTGCAGTCACGCAGCGCGGTTTGCGACTTGAATCCATATTGACAACTCACCATCACTTGGACCACGCTGGAGGAAACCTCGATCTTGTAACTAAATGCAGGAAACAAGGCTTAGAGGGACTAAAGGTGTACGGAGGAGATGATCGTATTGGTGGTTTGACTGATACTGTGTCGCACGGATATAAATNAAGATTGGTAGCAACCTCAACGTTTATTGCTTGGCTACACCATCGTCATACTACTGGTCATATATGTTATCTGGTTACCGAGGAAAACAGTACCAAGGAAGGAGCTGTATTTACTGGCGACACGTTGTTCCTTGGGGGCTGTGGAAGATTTTTTGAAGGGACTGCTGAACAAATGTTTAAGGCACTTATCGAAGTTCTTTCCAAGTTACCAACAACAACAAAAGTCTATTGTGGGCACGAATATACTGTAAAAAATCTTGAATTCGGCTTAACTGTTGAGCCAAAAAATGAAGCGCTTAAACATCGGCTAGAAGCCGTAAAACGTCTACGTGCGTCTAATCAAGCAAGTGTTCCCGGTACAATTGGGGAGGAATTAGCAACCAATCCTCTCATGCGTGTTTCTGAACCAGATGTGCTTGCACATGCGAAAACTACAGATCCCATCAAAGCCATGAAGACAATTCGTGAAGAAAAAGATCGCTTTTAGATTTAAAGGTCATCTGTCTTAAACCAGTGATGTATTACAATTTCTTCAATGAAGTTAGTATGCCCTTTTACATTCTTATCTTGACCCTGTTCATAGATGAAACATATCTATTGAATTAATCAATTAAAACTGTTACTAA]
consensusID : consensus_11047#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence
[GCTCATGACGAAGAGCAGTAGCAAAATTTATTTCATTAGACAGATTTCCGAGAGATCAAACGAGGATCTGTGCCCCTACATAAACAAGAACCTTTCCACATAACTCAAATTTAGATTTCAAAGAACTATCTTTTCGCAATATCTGCTGATTAAATTTTGAAAGTTGTTTAAGTTTGTTACTTCGGTTCAAGGGCATTTGGGAAGGAATTGGGCCAGCTGCTTCTCGTCTCGATCCCAATATTGTCGTAATCTGACACTCGTGCTATTACTGATTGTTGTCTATTGCTCTCCTTAGTAATTATAAGTGCGTTGCTGGGTCGTCGACTCGCCGTTTCTTCCGTCTTTTCCAGCCCTCACGCTACTTTGCATGCTTCCTTAGTCGGCACAGTACCTTCTGGCTCAAACCGCTACAATCGTCTCTAAGTGAGTTGCAGTGCATTCAAGATCTTACACACATGGTTCATACTTTCTGAGATT]
[-] EMBL CD197093 [GCTCATGACGAAGAGCAGTAGCAAAATTTATTTCATTAGACAGATTTCCGAGAGATCAAACGAGGATCTGTGCCCCTACATAAACAAGAACCTTTCCACATAACTCAAATTTAGATTTCAAAGAACTATCTTTTCGCAATATCTGCTGATTAAATTTTGAAAGTTGTTTAAGTTTGTTACTTCGGTTCAAGGGCATTTGGGAAGGAATTGGGCCAGCTGCTTCTCGTCTCGATCCCAATATTGTCGTAATCTGACACTCGTGCTATTACTGATTGTTGTCTATTGCTCTCCTTAGTAATTATAAGTGCGTTGCTGGGTCGTCGACTCGCCGTTTCTTCCGTCTTTTCCAGCCCTCACGCTACTTTGCATGCTTCCTTAGTCGGCACAGTACCTTCTGGCTCAAACCGCTACAATCGTCTCTAAGTGAGTTGCAGTGCATTCAAGATCTTACACACATGGTTCATACTTTCTGAGATT]
consensusID : consensus_11047#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 467 fasta sequence
[AGTCGGCACAGTACCTTCTGGCTCAAACCGCTACAATCGTCTCTAAGTCAGAAAGATAAGAATCCCATTTATAAAACTTGGCAAATTGTTTTGCGTGATGGAAGTCATAACTATACCTGCTTTGTCGGATAACTACATGTATGTAGTTATCGATAGGGCGTCAAATATATGCGCAGTTGTGGATCCAGTGGAACCTGATAAAATTTTGAGTGCAGTCACGCAGCGCGGTTTGCGACTTGAATCCATATTGACAACTCACCATCACTTGGACCACGCTGGAGGAAACCTCGATCTTGTAACTAAATGCAGGAAACAAGGCTTAGAGGGACTAAAGGTGTACGGAGGAGATGATCGTATTGGTGGTTTGACTGATACTGTGTCGCACGGATATAAAATAAAGATTGGTAGCAACCTCAACGTTTATTGCTTGGCTACACCATGTCATACTACCGTCACTTGTCTGAGTA]
[-] EMBL CD166184 [AGTCGGCACAGTACCTTCTGGCTCAAACCGCTACAATCGTCTCTAAGTCAGAAAGATAAGAATCCCATTTATAAAACTTGGCAAATTGTTTTGCGTGATGGAAGTCATAACTATACCTGCTTTGTCGGATAACTACATGTATGTAGTTATCGATAGGGCGTCAAATATATGCGCAGTTGTGGATCCAGTGGAACCTGATAAAATTTTGAGTGCAGTCACGCAGCGCGGTTTGCGACTTGAATCCATATTGACAACTCACCATCACTTGGACCACGCTGGAGGAAACCTCGATCTTGTAACTAAATGCAGGAAACAAGGCTTAGAGGGACTAAAGGTGTACGGAGGAGATGATCGTATTGGTGGTTTGACTGATACTGTGTCGCACGGATATAAAATAAAGATTGGTAGCAACCTCAACGTTTATTGCTTGGCTACACCATGTCATACTACCGTCACTTGTCTGAGTA]
[+] EMBL CD072635 [ GAACCTGATAAAATTTTGAGTGCAGTCACGCAGCGCGGTTTGCGACTTGAATCCATATTGACAACTCACCATCACTTGGACCACGCTGGAGGAAACCTCGATCTTGTAACTAAATGCAGGAAACAAGGCTTAGAGGGACTAAAGGTGTACGGAGGTGATGATCGTATTGGTGGTTTGACTGATACTGTGTCGCACGGATATAAAATAAAGATTGGTAGCAACCTCAACGTTTAT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11047#1 ------------------------------------------------------------
consensus_11047#3 ------------------------------------------------------------
consensus_11047#0 CTCAAGGACATTCGTAAATGAATTGTGCCAGATGCTTCTCGTCTCGATCCCAATATTGTC 60
consensus_11047#2 ------------------------------------------------------------
consensus_11047#1 ------------------------------------------------------------
consensus_11047#3 ------------------------------------------------------------
consensus_11047#0 GTAATCTGACACTCGTGCTATTACTGATTGTTGTCTATTGCTCTCCTTAGCAATTATAAG 120
consensus_11047#2 ------------------------------------------------------------
consensus_11047#1 ------------------------------------------------------------
consensus_11047#3 ------------------------------------------------------------
consensus_11047#0 TGCGTTGCTGGGTCGTCGACTCGCCGTTTCTTCCGTCTTTTCCAGCCCTCACGCTACTTT 180
consensus_11047#2 ------------------------------------------------------------
consensus_11047#1 ------------------------------------------------------------
consensus_11047#3 ------------AGTCGGCACAGTACCTTCTGGCTCAAACCGCTACAATCGTCTCTAAGT 48
consensus_11047#0 GCATGCTTCCTTAGTCGGCACAGTACCTTCTGGCTCAAACCGCTACAATCGTCTCTAAGT 240
consensus_11047#2 ------------------------------------------------------------
consensus_11047#1 ------------------------------------------------------------
consensus_11047#3 CAGAAAGATAAGAATCCCATTTATAAAACTTGGCAAATTGTTTTGCGTGATGGAAGTCAT 108
consensus_11047#0 CAGAAAGATAAGAATCCCATTTATAAAACTTGGCAAATTGTTTTGCGTGATGGAAGTCAT 300
consensus_11047#2 ------------------------------------------------------------
consensus_11047#1 -------------------------GGTTTTACTCTTGTGATTTGTTGCATGTCGAGT-- 33
consensus_11047#3 AACTATACCTGCTTTGTCGGATAACTACATGTATGTAGTTATCGATAGGGCGTCAAATAT 168
consensus_11047#0 AACTATACCTGCTTTGTCGGATAACTACATGTATGTAGTTATCGATAGGGCGTCAAATAT 360
consensus_11047#2 ------GCTCATGACGAAGAGCAGTAGCAAAATTTATTTCATTAGACAGATTTCCGAGA- 53
* * ** **
consensus_11047#1 --GAACAGTTGCAGGATCCAGTGGAACCTGATAAAATTTTGAGTGCAGTCACGCAGCGCG 91
consensus_11047#3 ATGCGCAGTTGT-GGATCCAGTGGAACCTGATAAAATTTTGAGTGCAGTCACGCAGCGCG 227
consensus_11047#0 ATGCGCAGTTGT-GGATCCAGTGGAACCTGATAAAATTTTGAGTGCAGTCACGCAGCGCG 419
consensus_11047#2 --GATCAAACGA-GGATC---TGTGCCCCTACATAAACAAGAACCTTTCCACATAACTCA 107
* ** * ***** ** ** * * ** ** *** * * *
consensus_11047#1 GTTTGCGACTTGAATCCATATTGACAACTCACCATCACTTGGACCACGCTGGAGGAAACC 151
consensus_11047#3 GTTTGCGACTTGAATCCATATTGACAACTCACCATCACTTGGACCACGCTGGAGGAAACC 287
consensus_11047#0 GTTTGCGACTTGAATCCATATTGACAACTCACCATCACTTGGACCACGCTGGAGGAAACC 479
consensus_11047#2 AATTTAGATTTCAAAGAACTATCTTTTCGCAATATCTGCTGATTAAATTTTGAAAGTTGT 167
** ** ** ** * * * ** *** ** * * **
consensus_11047#1 TCGATCTTGTAACT--AAATGCAGGAAACAAGGCTTAGAG--GGACTAAAGGTGTACGGA 207
consensus_11047#3 TCGATCTTGTAACT--AAATGCAGGAAACAAGGCTTAGAG--GGACTAAAGGTGTACGGA 343
consensus_11047#0 TCGATCTTGTAACT--AAATGCAGGAAACAAGGCTTAGAG--GGACTAAAGGTGTACGGA 535
consensus_11047#2 TTAAGTTTGTTACTTCGGTTCAAGGGCATTTGGGAAGGAATTGGGCCAGCTGCTTCTCGT 227
* * **** *** * *** * ** ** ** * * * * *
consensus_11047#1 GGAGATGATCGTATTG--GTGGTTTGAC--TGATACTGTGTCGCACGGATATAAA-TNAA 262
consensus_11047#3 GGAGATGATCGTATTG--GTGGTTTGAC--TGATACTGTGTCGCACGGATATAAAATAAA 399
consensus_11047#0 GGAGATGATCGTATTG--GTGGTTTGAC--TGATACTGTGTCGCACGGATATAAAATAAA 591
consensus_11047#2 CTCGATCCCAATATTGTCGTAATCTGACACTCGTGCTATTACTGATTGTTGTCTA-TTGC 286
*** ***** ** * **** * * ** * * * * * * * *
consensus_11047#1 GATTGGTAGCAACCTCAACGTTTATTGCTTGGCTACACCATCGTCATA-CTACTGGTCAT 321
consensus_11047#3 GATTGGTAGCAACCTCAACGTTTATTGCTTGGCTACACCAT-GTCATA-CTACCG-TCAC 456
consensus_11047#0 GATTGGTAGCAACCTCAACGTTTATTGCTTGGCTACACCAT-GTCATA-CTACTGGTCAT 649
consensus_11047#2 TCTCCTTAGTAATTATAA-GTGCGTTGCTGGGTCGTCGACTCGCCGTTTCTTCCGTCTTT 345
* *** ** ** ** ***** ** * * * * ** * *
consensus_11047#1 ATATGTTATCTGGTTACCGAGGAAAACAGTACCAAGGAAGGAGCTGTATTTACTGGCGAC 381
consensus_11047#3 -----TTGTCTGAGTA-------------------------------------------- 467
consensus_11047#0 ATATGTTATCTGGTTACCGAGGAAAACAGTACCAAGGAAGGAGCTGTATTTACTGGCGAC 709
consensus_11047#2 TCCAGCCCTCACGCTACTTTG---CATGCTTCCTTAGTCGGCACAGTACCTTCTGGCTCA 402
** **
consensus_11047#1 ACGTTGTTCCTTGGGGGCTGTGGAAGATTTTTTGAAGGGACTGCTGAACAAATGTTTAAG 441
consensus_11047#3 ------------------------------------------------------------
consensus_11047#0 ACGTTGTTCCTTGGGGGCTGTGGAAGATTTTTTGAAGGGACTGCTGAACAAATGTTTAAG 769
consensus_11047#2 AACCGCTACAATCGTCTCTAAGTGAGTTGCAGTGCATTCAAGATCTTACACACATGGTTC 462
consensus_11047#1 GCACTTATCGAAGTTCTTTCCAAGTTACCAACAACAACAAAAGTCTATTGTGGGCACGAA 501
consensus_11047#3 ------------------------------------------------------------
consensus_11047#0 GCACTTATTGAAGTTCTTTCCAAGTTACCAACAACAACAAAAGTCTATTGTGGGCACGAA 829
consensus_11047#2 ATACTTTCTGAGATT--------------------------------------------- 477
consensus_11047#1 TATACTGTAAAAAATCTTGAATTCGGCTTAACTGTTGAGCCAAAAAATGAAGCGCTTAAA 561
consensus_11047#3 ------------------------------------------------------------
consensus_11047#0 TATACTGTAAAAAATCTTGAATTCGGTTTAACTGTTGAGCCAAAAAATGAAGCGCTTAAA 889
consensus_11047#2 ------------------------------------------------------------
consensus_11047#1 CATCGGCTAGAAGCCGTAAAACGTCTACGTGCGTCTAATCAAGCAAGTGTTCCCGGTACA 621
consensus_11047#3 ------------------------------------------------------------
consensus_11047#0 CATCGGTTAGAAGCCGTAAAACGTTTACGTGCGTCTAATCAAGCAAGTGTTCCCGGTACA 949
consensus_11047#2 ------------------------------------------------------------
consensus_11047#1 ATTGGGGAGGAATTAGCAACCAATCCTCTCATGCGTGTTTCTGAACCAGATGTGCTTGCA 681
consensus_11047#3 ------------------------------------------------------------
consensus_11047#0 ATTGGGGAGGAATTAGCAACCAATCCTTTCATGCGTGTTTCTGAACCAGATGTGCTTGCA 1009
consensus_11047#2 ------------------------------------------------------------
consensus_11047#1 CATGCGAAAACTACAGATCCCATCAAAGCCATGAAGACAATTCGTGAAGAAAAAGATCGC 741
consensus_11047#3 ------------------------------------------------------------
consensus_11047#0 CATGCGAAAACTACAGATCCCATCAAAGCCATGAAGACAATTCGTGAAGAAAAAGATCGC 1069
consensus_11047#2 ------------------------------------------------------------
consensus_11047#1 TTTTAGATTTAAAGGTCATCTGTCTTAAACCAGTGATGTATTACAATTTCTTCAATGAAG 801
consensus_11047#3 ------------------------------------------------------------
consensus_11047#0 TTTTAGATTTAAAGGTCATCTGTCTTAAACCAGTGATGTATTACAATTTCTTCAATGAAG 1129
consensus_11047#2 ------------------------------------------------------------
consensus_11047#1 TTAGTATGCCCTTTTACATTCTTATCTTGACCCTGTTCATAGATGAAACATATCTATTGA 861
consensus_11047#3 ------------------------------------------------------------
consensus_11047#0 TTAGTATGCCCTTTTACATTCTTATCTTGACCCTGAACATAGATGAAACATATCTATTGA 1189
consensus_11047#2 ------------------------------------------------------------
consensus_11047#1 ATTAATCAATTAAAACTGTTACTAA--------------------- 886
consensus_11047#3 ----------------------------------------------
consensus_11047#0 ATTAATCAAATAAAACTGTTACTAATGAAAAAAAAAAAAAAAAAAA 1235
consensus_11047#2 ----------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||