These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1106#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [TCCCATTCGTTAAGGATCTACCTTATTTAGAGCTATGAGAAGTGTATTTGATACGCTGCAGATAAATACCACATAAGTTTGCTTGCTCTAATAACAAATTAATGTCAACTACCAAAATAACGCAGTCAGTCTGTTGCTGTTAGAAGTATGAGGGCAGCTATCACTTCCCGGTTGCCCGCATCGTGGAAGGGTTCTTCTAAAGGCACCTGAAAACGAAATTGGATTTGAAGTGGTCTTAATGACCTGAGAGCGTGACCGCAGTGCCCAAGGGACAACTGCTTGAGGTCGGTCACACATGACCTTTTGTGGGTAGTTTTTGTGTTAGCTCCGTACTTGTTGGGACTTTACCGCCGGAGACGGATATCCGTGGGATAAGACGAGGTGTGCACTTTTAGGGTCGACCTTTTCTAACCCCACCCCTCATGTGGGAAAGCAGCATCGCTGTTATGCTGGTTGTCTGAAGGAAACACCTTACTGCTGTCACACCTCTGTACAGTCAGCAGTACGACTTCGCCTTCGGACCTTGGGTTNTCTGCGTTCGGTCTTACCGTTCTTCAACCGACCTGCCTGGCATGGTANGACCTTGAGGAACGATTGTCTCAGCCAGTATAGCTTGTTGGGTTCA] [+] EMBL CD159269 [TCCCATTCGTTAAGGATCTACCTTATTTAGAGCTATGAGAAGTGTATTTGATACGCTGCAGATAAATACCACATAAGTTTGCTTGCTCTAATAACAAATTAATGTCAACTACCAAAATAACGCAGTCAGTCTGTTGCTGTTAGAAGTATGAGGGCAGCTATCACTTCCCGGTTGCCCGCATCGTGGAAGGGTTCTTCTAAAGGCACCTGAAAACGAAATTGGATTTGAAGTGGTCTTAATGACCTGAGAGCGTGACCGCAGTGCCCAAGGGACAACTGCTTGAGGTCGGTCACACATGACCTTTTGTGGGTAGTTTTTGTGTTAGCTCCGTACTTGTTGGGACTTTACCGCCGGAGACGGATATCCGTGGGATAAGACGAGGTGTGCACTTTTAGGGTCGACCTTTTCTAACCCCACCCCTCATGTGGGAAAGCAGCATCGCTGTTATGCTGGTTGTCTGAAGGAAACACCTTACTGCTGTCACACCTCTGTACAGTCAGCAGTACGACTTCGCCTTCGGACCTTGGGTTNTCTGCGTTCGGTCTTACCGTTCTTCAACCGACCTGCCTGGCATGGTANGACCTTGAGGAACGATTGTCTCAGCCAGTATAGCTTGTTGGGTTCA] consensusID : consensus_1106#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence [CTGGTGTCTGAAGGAAACACCTTACTGCCGTCACACCTCTGTACAGTCAGCAGTACGACTTCGCCTTCGGACCTTGAGTTTGCTGCTTTTAGTCTCACCGCTCTTCAAACGACCTGCNTGGCATGGTAGGACCTTGAGGAACGATTGTTCCAGCCAGTATAGCTCGACTGACTCATCACGATAGGCAAGCCCGACCATCACGTCAAGGTAGCAGCAACCTTACCTTAAACTTGAGTTTTAAGATCACCTTATACTTTTTATTCAGCGATTTAATGTTTCCTTCTCAAACCGCACGCCTTACAAATAATCTCTACTACCCGGGATAGCATTATTACTCCTACTAGTCTGGCATTTGTCTTGATAATTTTACGTCGTTACGTTGATATATTGTGGCGGCTTGAACCAATGACGTATGTGCCGTATCACTGCCAACAGAAATTAAATGGTACGGTGTCATCTGTAC] [-] EMBL CD062837 [CTGGTGTCTGAAGGAAACACCTTACTGCCGTCACACCTCTGTACAGTCAGCAGTACGACTTCGCCTTCGGACCTTGAGTTTGCTGCTTTTAGTCTCACCGCTCTTCAAACGACCTGCNTGGCATGGTAGGACCTTGAGGAACGATTGTTCCAGCCAGTATAGCTCGACTGACTCATCACGATAGGCAAGCCCGACCATCACGTCAAGGTAGCAGCAACCTTACCTTAAACTTGAGTTTTAAGATCACCTTATACTTTTTATTCAGCGATTTAATGTTTCCTTCTCAAACCGCACGCCTTACAAATAATCTCTACTACCCGGGATAGCATTATTACTCCTACTAGTCTGGCATTTGTCTTGATAATTTTACGTCGTTACGTTGATATATTGTGGCGGCTTGAACCAATGACGTATGTGCCGTATCACTGCCAACAGAAATTAAATGGTACGGTGTCATCTGTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1106#0 TCCCATTCGTTAAGGATCTACCTTATTTAGAGCTATGAGAAGTGTATTTGATACGCTGCA 60 consensus_1106#1 ------------------------------------------------------------ consensus_1106#0 GATAAATACCACATAAGTTTGCTTGCTCTAATAACAAATTAATGTCAACTACCAAAATAA 120 consensus_1106#1 ------------------------------CTGGTGTCTGAAGG--AAACACCTTACTGC 28 * * ** * ** *** * * consensus_1106#0 CGCAGTCAGTCTGTTGCTGTTAGAAGTATGAGGGCAGCTATCACTTCCCGGTTGCCCGCA 180 consensus_1106#1 CGTCACACCTCTGT-ACAGTCAGCAGTACGACTTCGCCTTCGGACCTTGAGTTTGCTGCT 87 ** ***** * ** ** **** ** * ** *** * ** consensus_1106#0 TCGTGGAAGGGTTCTTCTAAAGGCACCTGAA-AACGAAATTGGATTTGAAGTGGTCTTAA 239 consensus_1106#1 TTTAGTCTCACCGCTCTTCAAACGACCTGCNTGGCATGGTAGGACCTTGAGGAACGATTG 147 * * ** * ** ***** * * *** * ** * consensus_1106#0 TGACCTGAGAGCGTGACCGCAGTGCCCAAGGGACAACTGCTTGAGGTCGGTCACACATGA 299 consensus_1106#1 TT-CCAGCCAGTATAGCTCGACTGACTCATC-ACGA-TAGGCAAGCCCGACCAT-CACGT 203 * ** * ** * * * ** * * ** * * ** ** ** ** * consensus_1106#0 CCTTTTGTGGGTAGTTTTTGTGTTAGCTCCGTACTTGTTGGGACTTTACCGCCGGAGACG 359 consensus_1106#1 CAAGGTAGCAGCAACCTTACCTTAAACT---TGAGTTTTAAG-----ATCACCTTATAC- 254 * * * * ** * * ** * * ** * * * ** * ** consensus_1106#0 GATATCCGTGGGATAAGACGAGGTGTGCACTTTTAGGGTCGACCTTTTCTAACCCCACCC 419 consensus_1106#1 --TTTTTATTCAGCGATTTAATGTTTCCTTCTCAAACCGCACGCCTTACAAATAATCTCT 312 * * * * * ** * * * * * * ** * ** * consensus_1106#0 CTCATGTGGGAAAGCAGCATCGCTGTTATGCTGGTTGTCTGAAGGAAACACCTTACTGCT 479 consensus_1106#1 ACTACCCGGGATAGCATTATTACTCCTAC-----TAGTCTG--GCATTTGTCTTGATAAT 365 * **** **** ** ** ** * ***** * * *** * * consensus_1106#0 GTCACACCTCTGTACAGTCAGCAGTACGACTTCGCCTTCGGACCTTGGGTTNTCTGCGTT 539 consensus_1106#1 TTTACGTCGTTACGTTGATA----TATTGTGGCGGCTT-GAACC---AATGACGTATGTG 417 * ** * * * * ** ** *** * *** * * ** consensus_1106#0 CGGTCTTACCGTTCTTCAACCGAC-CTGCCTGGCATGGTANGACCTTGAGGAACGATTGT 598 consensus_1106#1 CCGTATCACTGC----CAACAGAAATTAAATGGTACGGTGTCATCTGTAC---------- 463 * ** * ** * **** ** * *** * *** * ** * consensus_1106#0 CTCAGCCAGTATAGCTTGTTGGGTTCA 625 consensus_1106#1 --------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||