These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11060#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 21 consensus length = 804 fasta sequence [GGGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA-AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCTGGAAATACACCAATTCCTATAACATCAAAAACCGAAATATTAAAATCTCATCCACGTAATGGATTACGACCTGGTCATATACATCAGTCCTCCGCTAGAAATTCCAATGGAACACGTCAAATGTTGGCACGTTGGAATGCTTGTCGTAAACAAAATAATCATACAAACCTATGCGTTGATTCTCAACGTTCCAAATGTTTACGCCGTGGTCCACTAATTAATCATGGTTTTCAGCGTCGTCAAGTTCGTATGGGCAACGGTGGTCATATACCTCATCAAAGAAGTTAATAGAAAATCAAGAAATTAATTGATTTTTGTGATATTTTGCTTCTACAACATTGTAATAACGGATATTTGGTGTTCAGTTTGTTTGTCACATTGATATTAGTGGCAATA] [+] EMBL AI067263 [GGGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTGAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGACGTGATCAACGA CGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACACATCAAAAGACACACATTTGTCAGGGAGTATTCCTGGAAATACACCAATTCCTATAACATCAAAAACCGAAATATTAAAATCTCATCCACGTAATGGATTACGACCTGGTCATATACATCAGTCCTCCGCTAGAAATTCCAATGGAACACGTCAAATGTTGGCACCTTGGAATGCTTGTCGTAGACAAAATAATCATACAAACCTATGCGTTGATTCTCAACGT ] [+] EMBL AI067395 [GGGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCT ] [+] EMBL AI068055 [GGGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCT ] [+] EMBL AI067224 [GGGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCTGGAAATACACCAATTCCTATAACATCAAAAACCGAAATATTAAAATCTCATCCACGTAATGGATTACGACCTGGTCATATACATCAGTCCTCCGCTAGAAATTCCAATGGAACACGTCAAATGTT ] [+] EMBL AI066989 [GGGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAAT ] [+] EMBL AI067311 [GGGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGAT ] [+] EMBL AI067484 [GGGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCG ] [+] EMBL AI067076 [GGGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCA ] [+] EMBL AI068149 [GGGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGANAAATGCTAACAAATCAAAAGACAAACATTTGTCAGGGAGTATTCCTGGANATACACCAATTCCT ] [+] EMBL AI067375 [GGGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCT ] [+] EMBL AI068005 [ GGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCTGGAAATACACCAATTCCTATAACATCAAAAACCGAAATATTAAAATCTCATCCACGTAATGGATTACGACCTGGTCATATACATCAGTCCTCCGCTAGAAATTCCAATGGAACACGTCAAATGTTGGCACGTTGGAATGCTTGTCGTAAACAAAATAATCATACAAACC ] [+] EMBL AI067223 [ GGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCTGGAAATACACCAATTCCTATAACATCAAAAACCGAAATATTAAAATCTCATCCACGTAATGGATTACGACCTGGTCATATACATCAGTCCTCCGCTAGAAATTCCAATGGAACACGTCAAATGTTGGCACGTTGGAATGCCTGTCGTAAAC ] [+] EMBL AI068011 [ GGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACATTTATTTATCACTTTTAATCATGATGAAAGCCTGTTAATTGGTCGATATTAATGGTGAAGTGATCAACGATTGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCANAAAACAAACATTTGTCAGGGAGTATTCCTGGAAATACACCAATTCCTATAACATCATAAACCGAAATATTAAAATCTCATCCACGTAATGGATTACGACCTGGTCATATACATCAGT ] [+] EMBL AI067764 [ GGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCTGGAAATACACCAATTCCTATAACATCAAAAACCGAAATATTAAAATCTCATCCACGTAATGG ] [+] EMBL AI068334 [ GGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAGAAATGCTAACAAATCATAAAACAAACATTTGTCACGGAGTATTCCTGGAAATACA CAATTCCTATAACATCAAAAACCGAGATATTAAAATCTCA ] [+] EMBL AI068083 [ GGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAACATTTGTCA ] [+] EMBL AI067754 [ GGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCT ] [+] EMBL AI068078 [ GGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCC ] [+] EMBL AI067343 [ GGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGC ] [-] EMBL CD197736 [ AAAATGCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCTGGAAATACACCAATTCCTATAACATCAAAAACCGAAATATTAAAATCTCATCCACGTAATGGATTACGACCTGGCCATATACATCAGTCCTCCGCTAGAAATTCCAATGGAACACGTCAAATGTTGGCACGTTGGAATGCTTGTCGTAAACAAAATAATCATACAAACCTATGCGTTGATTCTCAACGTTCCAAATGTTTACGCCGTGGTCCACTAATTAATCATGGTTTTCAGCGTCGTCAAGTTCGTATGGGCAACGGTGGTCATATACCTCATCAAAGAAGTTAATAGAAAATCAAGAAATTAATTGATTTTTGTGATATTTTGCTTCTACAACATTGTAATAACGGATATTTGGTGTTCAGTTTGTTTGTCACATTGATATTAGTGGCAATA] [-] EMBL BG931850 [ TCATATACATCAGTCCTCCGCTAGAAATTCCAATGGAACACGTCAAATGTTGGCACGTTGGAATGCTTGTCGTAAACAAAATAATCATACAAACCTATGCGTTGATTCTCAACGTTCCAAATGTTTACGCCGTGGTCCACTAATTAATCATGGTTTTCAGCGTCGTCAAGTTCGTATGaa ] consensusID : consensus_11060#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 729 fasta sequence [TCCAGGCCAANAATTTGGCACGAGGTTCTCAACT--CATGTTACACAGAAGCTGAGACGCAAGGTTCCTCCTGCTTTTATTGGTTTC-TTTCTGTTTCTAGTTTCGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGAAGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCTGGAAATACACCAATTCCTATAACATCAAAAACCGAAATATTAAAATCTCATCCACGTAATGGATTACGACCTGGTCATATACATCAGTCCTCCGCTAGAAATTCCAATGGAACACGTCAAATGTTGGCACGTTGGAATGCTTGTCGTAAACAAAATAATCATACAAACCTATGCGTTGATTCTCAACGTTCCAAATGTTTACCGCCGTGGTCCACTAATTAATCATGGTTNTCAGCGTCGTCAAGTTCGTATGGGCAACGGTGGTATAT] [+] EMBL CD080843 [TCCAGGCCAANAATTTGGCACGAGGTTCTCAACT CATGTTACACAGAAGCTGAGACGCAAGGTTCCTCCTGCTTTTATTGGTTTC TTTCTGTTTCTAGTTTCGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGAAGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCTGGAAATACACCAATTCCTATAACATCAAAAACCGAAATATTAAAATCTCATCCACGTAATGGATTACGACCTGGTCATATACATCAGTCCTCCGCTAGAAATTCCAATGGAACACGTCAAATGTTGGCACGTTGGAATGCTTGTCGTAAACAAAATAATCATACAAACCTATGCGTTGATTCTCAACGTTCCAAATGTTTACCGCCGTGGTCCACTAATTAATCATGGTTNTCAGCGTCGTCAAGTTCGTATGGGCAACGGTGGTATAT] [-] EMBL CD141386 [ aGTT TC ACTNNCATGTANCACAGAAGCTGAGACGCAAGGTTCCTCCTGCTTTTA TGGTTTCTTTTCTGTTTCTAGTTTCGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGAAGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGA ] [+] EMBL CD138229 [ AATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGAAGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAGCATTTGTCAGGGAGTATCCCTGGAAATACACCAATTCCTATTACATCAAAAACCGAc ] [+] EMBL CD138860 [ ATTATTCATCACTTTTAATCATGATGAAAGCCTGGCAATTGGCCGATATTAATGGTGAAGTGATCAACGATGAAGAT TTTCAA TGTGGGTCCTGATTGGTCATTCATGCAATTCGATCGGCATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTACTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCTGGAAATACACCAATTCCTATAACATCAAAAACCGAAATATTAAAATCTCATCCACGTAATGGATTACGACCTGGTCATA ] [+] EMBL AI068362 [ GAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGAAGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAACATTTGTCACGGAGTATTCCTGGAAATACACCAATTCCTATAACATCAAAAACCGAAATATTAAAATCTCATC ] [-] EMBL CD121925 [ GATATTTCAAGTGTGGTNTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCTGGAAATACACCAATTCCTATAACATCAAAAACCGAAATATTAAAATCTCATCCACGTAATGGATTACGACCTGGT ] [-] EMBL CD138091 [ TATCCAAGTCGCCCACATTCGATAGGTGGTGGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCTGGAAATACACCAATTCCTATAACATCAAAAACCGAAATATTAAAATCTCATCCACGTAATGGATTACGACCTGGTCATATACATCAGTCCTCCGCTAGAAATTCCAATGGAACACGTCAAATGTTGGCACGTTGGAATGCTTGTCGTAAACAAAATAATCATACAAACCT ] consensusID : consensus_11060#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence [GAGGTTGATCCTCAACGTCCCAANTGTNTACGCCGNGGTCCACTAAATNAATCATGGTTTTCAGCGTCGTCAAGTTCGTTTGGGCAACGGTGGTCATNTACCTCATCAAAGAAGTTAATAGAAAATCACGANATTACTTGATTTCGGTGATATTTGGCTTCTACAACATTGTCATAACGGATNTTNGGTGTTCAGNTNGTNNGGTCACATTGNATATTAGTGGCAAATAAGAATTTACATGTGATNCTNNNNCATTACTTAGNGTCTNAGTGTNATCCAATNAGCAAANATTCCCCACAAAAATTTNNNACTCAACCCAACAGNTTCTTTCTCTTNTTAAATTTTAGGTAATNTTTACNCAACCCCNTGGGGTGTNCNTT] [+] EMBL SM4031 [GAGGTTGATCCTCAACGTCCCAANTGTNTACGCCGNGGTCCACTAAATNAATCATGGTTTTCAGCGTCGTCAAGTTCGTTTGGGCAACGGTGGTCATNTACCTCATCAAAGAAGTTAATAGAAAATCACGANATTACTTGATTTCGGTGATATTTGGCTTCTACAACATTGTCATAACGGATNTTNGGTGTTCAGNTNGTNNGGTCACATTGNATATTAGTGGCAAATAAGAATTTACATGTGATNCTNNNNCATTACTTAGNGTCTNAGTGTNATCCAATNAGCAAANATTCCCCACAAAAATTTNNNACTCAACCCAACAGNTTCTTTCTCTTNTTAAATTTTAGGTAATNTTTACNCAACCCCNTGGGGTGTNCNTT] consensusID : consensus_11060#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 268 fasta sequence [TTTCGGGCGCAATATGCAATCAAGAAATTAATTGATTTTTGTGATATTTTGCTCTACAACATTGTAATAACGGATATTTGGTGTTCAGTTTGTTTGTCACATTGATATTAGTTGCCATTAGGACTTACCATGGATTCCTTTAAATTACCTAAGGGCCTAAGTGTATACCTTAGGAAAAATTACCCCCAAATTTGCCCTCACTCCAACAGCTATATTCCATAAAATTTTATTTATAACACCCTTCTCTGGGTGCTCCAATCCGGGTTTT] [+] EMBL AW146492 [TTTCGGGCGCAATATGCAATCAAGAAATTAATTGATTTTTGTGATATTTTGCTCTACAACATTGTAATAACGGATATTTGGTGTTCAGTTTGTTTGTCACATTGATATTAGTTGCCATTAGGACTTACCATGGATTCCTTTAAATTACCTAAGGGCCTAAGTGTATACCTTAGGAAAAATTACCCCCAAATTTGCCCTCACTCCAACAGCTATATTCCATAAAATTTTATTTATAACACCCTTCTCTGGGTGCTCCAATCCGGGTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11060#2 ------------------------------------------------------------ consensus_11060#3 ------------------------------------------------------------ consensus_11060#0 ----------------------------------------------------GGGTACA- 7 consensus_11060#1 TCCAGGCCAANAATTTGGCACGAGGTTCTCAACTCATGTTACACAGAAGCTGAGACGCAA 60 consensus_11060#2 ------------------------------------------------------------ consensus_11060#3 ------------------------------------------------------------ consensus_11060#0 GCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCC 67 consensus_11060#1 GGTTCCTCCTGCTTTTATTGGTTTCTTTCT-GTTTCTAGTTTCGTAAAATATATTCATCC 119 consensus_11060#2 ------------------------------------------------------------ consensus_11060#3 ------------------------------------------------------------ consensus_11060#0 TATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCG 127 consensus_11060#1 TATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCG 179 consensus_11060#2 ------------------------------------------------------------ consensus_11060#3 ------------------------------------------------------------ consensus_11060#0 ATATTAATGGTGAAGTGATCAACGAAGAAGATATTTCAAGTGTGGGTTCTGATTGGTCAT 187 consensus_11060#1 ATATTAATGGTGAAGTGATCAACGAAGAAGATATTTCAAGTGTGGGTTCTGATTGGTCAT 239 consensus_11060#2 ------------------------------------------------------------ consensus_11060#3 ------------------------------------------------------------ consensus_11060#0 TCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGAC 247 consensus_11060#1 TCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGAC 299 consensus_11060#2 -----------GAGGTTGATCCTCAACGTCCCAANTGTNTACGCCGNGGTCCACTAAATN 49 consensus_11060#3 ------------------------------------------------------------ consensus_11060#0 GATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTC-TGCGAACAGTGATTATAAC 306 consensus_11060#1 GATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTC-TGCGAACAGTGATTATAAC 358 consensus_11060#2 AATCATGGTTTTCAGCGTCGTCAAGTTCGTTTGGGCAACGGTGGTCATNTACCTCATCAA 109 consensus_11060#3 --------------------------------------------------------TTTC 4 consensus_11060#0 TGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAAT 366 consensus_11060#1 TGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAAT 418 consensus_11060#2 AGAAGTTAATAGAAAATCACGANATTACTTGA------TTTCGGTGATAT-TTGGCTTCT 162 consensus_11060#3 GGGCGC-AATATGCAATCAAGAAATTAATTGA------TTTTTGTGATAT-TTTGCT-CT 55 consensus_11060#0 GCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCTGGAAATACACCAATTCCT 426 consensus_11060#1 GCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCTGGAAATACACCAATTCCT 478 *** ** ** ** * * * *** * ** consensus_11060#2 ACAACATTGTCATAACGGATNTTNGGTGTTCAGNT---NGTNNGGTCACAT--------T 211 consensus_11060#3 ACAACATTGTAATAACGGATATTTGGTGTTCAGTT---TGTTTG-TCACAT--------T 103 consensus_11060#0 ATAACATCAAAAACCGAAATATTAAAATCTCATCCACGTAATGGATTACGACCTGGTCAT 486 consensus_11060#1 ATAACATCAAAAACCGAAATATTAAAATCTCATCCACGTAATGGATTACGACCTGGTCAT 538 * ***** * ** ** *** * * ** * consensus_11060#2 GNATATTAGTGG-CAAATAAGAATTTACATGTGATNCTNNNNCATTACTTA-GNGTCTNA 269 consensus_11060#3 GA-TATTAGTTG-CCATTAGGACTTACCATG-GATTCCTTTAAATTACCTAAGGGCCTAA 160 consensus_11060#0 ATACATCAGTCCTCCGCTAGAAATTCCAATG-GAACACGTCAAAT-GTTGGCACGTTGGA 544 consensus_11060#1 ATACATCAGTCCTCCGCTAGAAATTCCAATG-GAACACGTCAAAT-GTTGGCACGTTGGA 596 ** *** * ** * ** *** ** ** * * consensus_11060#2 GTGTNATCCAATNAGCAAANATTCCCCACAAAAAT-----TTNNNACTCAACCCAACAGN 324 consensus_11060#3 GTGTATACC--TTAGGAAAAATTACCCCCAAA--------TTTGCCCTCACTCCAACAGC 210 consensus_11060#0 ATGCTTGTCG-TAAACAAAATAATCATACAAACCTATGCGTTGATTCTCAACGTTCCAAA 603 consensus_11060#1 ATGCTTGTCG-TAAACAAAATAATCATACAAACCTATGCGTTGATTCTCAACGTTCCAAA 655 ** * * * *** * **** ** **** ** consensus_11060#2 TTCTTTCTCTT--NTTAAATT--TTAGGTAATNTTTACNCAACCCCNTGGGGTGTNCNTT 380 consensus_11060#3 TATATTCCATAAAATTTTATT--TATAACACCCTTCTCTGGGTGCTCCAATCCGGGTTTT 268 consensus_11060#0 TGTTTAC-GCCGTGGTCCACTAATTAATCATGGTTTTCAGCGTCGTCAAGTTCGTATGGG 662 consensus_11060#1 TGTTTACCGCCGTGGTCCACTAATTAATCATGGTTNTCAGCGTCGTCAAGTTCGTATGGG 715 * * * * * * * * ** * * consensus_11060#2 ------------------------------------------------------------ consensus_11060#3 ------------------------------------------------------------ consensus_11060#0 CAACGGTGGTCATATACCTCATCAAAGAAGTTAATAGAAAATCAAGAAATTAATTGATTT 722 consensus_11060#1 CAACGGTGGT-ATAT--------------------------------------------- 729 consensus_11060#2 ------------------------------------------------------------ consensus_11060#3 ------------------------------------------------------------ consensus_11060#0 TTGTGATATTTTGCTTCTACAACATTGTAATAACGGATATTTGGTGTTCAGTTTGTTTGT 782 consensus_11060#1 ------------------------------------------------------------ consensus_11060#2 ---------------------- consensus_11060#3 ---------------------- consensus_11060#0 CACATTGATATTAGTGGCAATA 804 consensus_11060#1 ---------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||