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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11063#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 19 consensus length = 1288 fasta sequence
[AGCTGGAACTATCTGTACTTGAATGTTCATTCTGTGACATGGCTGTTTTATCAGGATCACTGGTACCATAGGCGTGAGATCCTCCGAAAGGACCACCTGAATTTTGTTGCATTCCAGGTCTCCCAGATCTGTCTGACGCCATACCTCCACTGTAAGGATCTGAGCTAGGGTTTGTGAAATTACCCTGATCACCAGTATATGAGTTGGGATAATTAGAAGCAGAATTAGGATTCCCATATGAAGGGAGACTCCCTCGATTGTAACCACCACCAGGCGCATTTGGATATCCTGCTGGACCACCTGAGAACGGAGGATTGCCTCTTTGATAGGCAGAATAACTACCACCAGAGGGCTTTTGCAATGCGTTTGCGTTGTAGGGACCTGGT-CCGCCAAAACGTCTGTTTCGATAATCATCATTTGGTGGCCCCGGATATTGCTCCTCAGCTGGATTTTGATAACCTTCCGCACCACCGTACATATTATACTGTTGGCTATCGTCGGGAAATCC-GCCAATCATATCACGATCAGGCTGAGCACCGCCACGACC-GGAAACGGGTGCGTTACGACCCAGTTGACCACGATCAACACCCCTGTCAGTATTAGCTGCGCGTCCTGGGGCGACTGCCCCACGTCCCATAGACGTCCCACCACGACCGGGGGCTCCGCGAGATCCCTGCATTTGGACACCGCGACCACTACCTCCGTACCCTCCTCTAAAGCCTCCACTCATTGGGCCGCCTTCATACGGCGGCTGAGAAAGTGAGGCTTCGCTCATATCATAGGCATTGCCAATCGGCTCTGCATCACCTGCATTACCATCAAAGCGATTATACATAGTGTCATTTGGCCCACCATAACCTGGGTTCCCTCGGTCCATTGAACCACGATAGGCACCTCGTCCAGCACGCGAATCAAAATTCGGTGCAGTGAAACCGCCTCTTGCAGGGCCGCTCCTCATCATGCCACCGCGGGAGTTGTCGAAACCTCCAAATCCACCCGGGCCAGACATCCCACTTGGAAACGGTCCACGATTCGGAGGCCCGAAACGACCACCAGGAGGACCACCACCATACCTTCCACTGGGCTGACGACCAAATGACTCTCGGTCGCTATTTCGATCGAAGCGATCTCCCTCACGACTTCGATCACGTGAAGCATTGTAACCGCCTCTGTAGTCACGGCGACCACGATCATCATTTCGGCGGTTCGGAGAGCTTCGAAAATCATCCCGTCGTCCACGCGGCATGTCACGACCACGATCTCGGCTATCCCGCCCGCGGAAACGTGA]
[+] EMBL CD181123 [AGCTGGAACTATCTGTACTTGAATGTTCATTCTGTGACATGGCTGTTTTATCAGGATCACTGGTACCATAGGCGTGAGATCCTCCGAAAGGACCACCTGAATTTTGTTGCATTCCAGGTCTCCCAGATCTGTCTGACGCCATACCTCCACTGTAAGGATCTGAGCTAGGGTTTGTGAAATTACCCTGATCACCAGTATATGAGTTGGGATAATTAGAAGCAGAATTAGGATTCCCATATGAAGGGAGACTCCCTCGATTGTAACCACCACCAGGCGCATTTGGGTATCCTGCTGGACCACCTGAGAACGGAGGATTGCCTCTTTGATAGGCAGAATAACTACCACCAGAGGGCTTTTGCAATGCGTTTGCG ]
[+] EMBL CD066425 [ CCATAGGCGTGAGATCCTCCGAAAGGACCACCTGAATTTTGTTGCATTCCAGGTCTCCCAGATCTGTCTGACGCCATACCTCCACTGTAAGGATCTGAGCTAGGGTTTGTGAAATTACCCTGATCACCAGTATATGAGTTGGGATAATTAGAAGCAGAATTAGGATTCCCATATGAAGGGAGACTCCCTCGATTGTAACCACCACCAGGCGCATTTGGATATCCTGCTGGACCACCTGAGAACGGAGGATTGCCTCTTTGATAGGCAGAATAACTACCACCAGAGGGCTTTTGCAATGCGTTTGCGTTGTAGGGACCTGGT CCGCCAAAACGTCTGTTTCGATAATCATCATTTGGTGGCCCCGGATATTGCTCCTCAGCTGGAT ]
[+] EMBL CD129264 [ cTAGGCGTGAGATCCTCCGAAAGGACCACCTGAATTTTGTTGCATTCCAGGTCTCCCAGATCTGTCTGACGCCATACCTCCACTGTAAGGATCTGAGCTAGGGTTTGTGAAATTACCCTGATCACCAGTATATGAGTTGGGATAATTAGAAGCAGAATTAGGATTCCCATATGAAGGGAGACTCCCTCGATTGTAACCACCACCAGGCGCATTTGGATATCCTGCTGGACCACCTGAGAACGGAGGATTGCCTCTTTGATAGGCAGAATAACTACCACCAGAGGGCTTTTGCAATGCGTTTGCGTTGTAGGGACCTGGT CCGCCAAAACGTCTGTTTCGATAATCATCATTTGGTGGCCCCGGATATTGCTCCTCAGCTGGATTTTGATAACCTTCCGCACCACCGTACATATTATACTGTTGGCTATCGTCGGGAAATCC GCCAATCATATCACGATCAGGCTGAGCACCGCCACGACC GGAAACGGGTGCGTTACGACCCAGTTGACCACGATCAACACCCCTGTCAGTATTAGCTGCGCGTCCTGGGGCGACTGCCCCACGTCCCATAGACGTCCCACCACGACCGGGGGCTCCGCGAGATCCCTGCATTTGGACACCGCGACCACTACCTCCGTACCCTCCTCTAAAGCCTCC ]
[+] EMBL CD131087 [ ATTCCAGGTCTCCCAGATCTGTCTGACGCCATACCTCCACTGTAAGGATCTGAGCTAGGGTTTGTGAAATTACCCTGATCACCAGCATATGAGTTGGGATAATTAGAAGCGGAATTAGGATTCCCATATGAAGGGAGACTCCCTCGATTGTAACCACCACCAGGCGCATTTGGATATCCTGCTGGACCACCTGAGAACGGAGGATTGCCTCTTTGATAGGCAGAATAACTACCACCAGAGGGCTTTTGCAATGCGTTTGCGTTGTAGGGACCTGGT CCGCCAAAACGTCTGTTTCGATNATCATCATTTGGTGGCCCCG ]
[+] EMBL CD145378 [ TAGGGTTTGTGAAATTACCCTGATCACCAGTATATGAGTTGGGATAATTAGAAGCAGAATTAGGATTCCCATATGAAGGGAGACTCCCTCGATTGTAACCACCACCAGGCGCATTTGGATATCCTGCTGGACCACCTGAGAACGGAGGATTGCCTCTTTGATAGGCAGAATAACTACCACCAGAGGGCTTTTGCAATGCGTTTGCGTTGTAGGGACCTGGT CCGCCAAAACGTCTGTTTCGATAATCATCATTTGGTGGCCCCGGATATTGCTCCTCAGCTGGATTTTGATAACCTTCCGCACCACCGTACATATTATACTGTTGGCTATCGTCGGGAAATCC GCCAATCATATCACGATCAGGCTGAGCACCGCCACGACC GGAAACGGGTGCGTTACGACCCAGT ]
[+] EMBL CD185014 [ GTGAAATTACCCTGATCACCAGTATATGAGTTGGGATAATTAGAAGCAGAA TAGGATTCCCATATGAAGGGAGACTCCCTCGATTGTAACCACCACCAGGCGCATTCGGATATCCTGCTGGACCACCTGAGAACGGAGGATTGCCTCTTTGATAGGCAGAATAACTACCACCAGAGGGCTTTTGCAATGCGTTTGCGTTGTAGGGACCTGGTCCCGCCAAAACGTCTGTTTCGATAATCATCATTTGGTGGCCCCG ]
[+] EMBL CD131092 [ GTGAAATTACCCTGATCACCAGTATATGAGTTGGGATAATTAGAAGCAGAATTAGGATTCCCATATGAAGGGAGACTCCCTCGATTGTAACCACCACCAGGCGCATTTGGATATCCTGCTGGACCACCTGAGAACGGAGGATTGCCTCTTTGATAGGCAGAATAACTACCACCAGAGGGCTTTTGCAATGCGTTTGCGTTGTAGGGACCTGGT CCGCCAAAACGTCTGTTTCGATAATCATCATTTGGTGGCCCCG ]
[+] EMBL CD143017 [ TGGGATAATTAGAAGCAGAATTAGGATTCCCATATGAAGGGAGACTCCCTCGATTGTAACCACCACCAGGCGCATTTGGATATCCTGCTGGACCACCTGAGAACGGAGGATTGCCTCTTTGATAGGCAGAATAACTACCACCAGAGGGCTTTTGCAATGCGTTTGCGTTGTAGGGACCTGAT CCGCCAAAACGTCTGTTTCGATAATCATCATTTGGTGGCCCCGGATATTGCTCCTCAGCTGGATTTTGATAACCTTCCGCACCACCGTACATATTATACTGTTGGCTATCGTCGGGAAATCCNGCC ATCATATCACGATCAGGCTGAGCACCGCCACAACCGGGGAACGGGTG ]
[+] EMBL CD129265 [ gCCACCGCCAGGCGCATTTGGATATCCTGCTGGACCACCTGAGAACGGAGGATTGCCTCTTTGATAGGCAGAATAACTACCACCAGAGGGCTTTTGCAATGCGTTTGCGTTGTACGGACCTGGT CCGCCAAAACGCCTGTTTCGATAATCATAATTTGGTGGCCCCGGATATTGCTCCTCAGCTGGATTGTGATAACCTTCCGCACCACCGTACATATTAT ]
[+] EMBL CD182892 [ TTTGATAGGCAGAATAACTACCACCAGAGGGCTTTTGCAATGCGTTTGCGTTGTAGGGACCTGGT CCGCCAAAACGTCTGTTTCGATAATCATCATTTGGTGGCCCCGGATATTGCTCCTCAGCTGGATTTTGATAACCTTCCGCACCACCGTACATATTATACTGTTGGCTATCGTCGGGAAATCC GCCAATCATATCACGATCAGGCTGAGCACCGCCACGACC GGAAACGGGTGCGTTACGACCCAGTTGACCACGATCAACACCCCTGTCAGTATTAGCTGCGCGTCCTGGGGCGACTGCCCCACGTCCCATAGACGTCCCACCACGA ]
[-] EMBL CD091782 [ GTCTGTTTCGATAATCATCATTTGGTGGCCCCGGAAATTGCTCCTCAGCTGGATTTTGATAACCTTCCGCACCACCGTACATATTATACTGTTGGCTATCGTCGGGAAATCC GCCAATCATATCACGATCAGGCTGAGCACCGCCACGACC GGAAACGGGTGCGTTACGACCCAGTTGACCACGATCAACACCCCTGTCAGTATTAGCTGCGCGTCCTGGGGCGACTGCCCCACGTCCCATAGACGTCCCACCACGACCGGGGGCTCCGCGAGATCCCTGCATTTGGACACCGCGACCACTACATCCGTACCCTCCTCTAAAGCCTCCACTCATTGGGCCGCCTTCATACGGCGGCTGAGAAAGTGAGGCTTCGCTCATATCATAGGCATTGCCAATCGGCTCTGCATC ]
[-] EMBL CD091762 [ ACCTTCCGCACCGCCGTACATATTATACTGTTGGCCATCGTCGGGAAATCC GCCAATCATATCACGATCAGGCTGAGCACCGCCACGACC GGAAACGGGTGCGTTACGACCCAGTTGACCACGATCAACACCCCTGTCAGTATTAGCTGCGCGTCCTGGGGCGACTGCCCCACGTCCCATAGACGTCCCACCACGACCGGGGGCTCCGCGAGATCCCTGCATTTGGACACCGCGACCACTACCTCAGTACCCTCCTCTAAAGCCTCCACTCATTGGGCCGCCTTCATACGGCGGCTGAGAAAGTGAGGCTTCGCTCATATCATAGGCATCGCCAATCGGCTCTGCATC ]
[-] EMBL CD191097 [ TCCGCGAGATCCCTGCATTTGGACACCGCGACCACTACCTCCGTACCCTCCTCTAAAGCCTCCACTCATTGGGCCGCCTTCATACGGCGGCTGAGAAAGTGAGGCTTCGCTCATATCATAGGCATTGCCAATCGGCTCTGCATCACCTGCATTACCATCAAAGCGATTATACATAGTGTCATTTGGCCCACCATAACCTGGGTTCCCTCGGTCCATTGAACCACGATAGGCACCTCGTCCAGCACGCGAATCAA ]
[+] EMBL CD119179 [ GGACACCGCGACCACTACCTCCGTACCCTCCTCTAAAGCCTCCACTCATTGGGCCGCCTTCATACGGCGGCTGAGAAAGTGAGGCTTCGCTCATATCATAGGCATTGCCAATCGGCTCTGCATCACCTGCATTACCATCAAAGCGATTATACATAGTGTCATTTGGCCCACCATAACCTGGGTTCCCTCGGTCCATTGAACCACGATAGGCACCTCGTCCAGCACGCGAATCAAAATTCGGTGCAGTGAAACCGCCTCTTGCAGGGCCGCTCCTCATCATGCCACCGCGGGAGTTGTCGAAACCTCCAAATCCACCCGGGCCAGACATCCCACTTGGAAACGGTCCACGATTCGGAGGCCCGAAACGACCACCAGGAGGACCACCACCATACCTTCCACTGGGCTGACGACCAAATGACTCTCGGTCGCTATTTCGATCGAAGCGATCTCCCTCACGACTTCGATCACGTGAAGCATTGTAAACG ]
[-] EMBL CD135957 [ CCTCCTCTAAAGCCTCCACTCATTGGGCCGCCTTCATACGGCGGCTGAGAAAGTGAGGCTTCGCTCATATCATAGGCATTGCCAATCGGCTCTGCATCACCTGCATTACCATCAAAGCGATTATACATAGTGTCATTTGGCCCACCATAACCTGGGTTCCCTCGGTCCATTGAACCACGATAGGCACCTCGTCCAGCACGCGAATCAAAATTCGGTGCAGTGAAACCGCCTCTTGCAGGGCCGCTCCTCATCATGCCACCGCGGGAGTTGTCGAAACCTCCAAATCCACCCGGGCCAGACA ]
[+] EMBL CD142563 [ GCCTCCACTCATTGGGCCGCCTTCATACGGCGGCTGAGAAAGTGAGGCTTCGCTCATATCATAGGCATTGCCAATCGGCTCTGCATCACCTGCATTACCATCAAAGCGATTATACATAGTGTCATTTGGCCCACCATAACCTGGGTTCCCTCGGTCCATTGAACCACGATAGGCACCTCGTCCAGCACGCGAATCANAATTCGGTGCAGTGAAACCGCCTCTTGCAGGGCCGCTCCTCATCATGCCACCGCGGGAGTTGTCGAAACCTCCAAATCCACCCGGGCCAGACATCCCACTTGGAAACGGTCCACGATTCGGAGGCCCGANACGACCACCAGGAGGACCACCACCAT ]
[+] EMBL CD120091 [ CCCTCGGTCCATTGAACCACGATAGGCACCTCGTCCAGCACGCGAATCAAAATTCGGTGCAGTGAAACCGCCTCTTGCAGGGCCGCTCCTCATCATGCCACCGCGGGAGTTGTCGAAACCTCCAAATCCACCCGGGCCAGACATCCCACTTGGAAACGGTCCACGATTCGGAGGCCCGAAACGACCACCAGGAGGACCACCACCATACCTTCCACTGGGCTGACGACCAAATGACTCTCGGTCGCTATTTCGATCGAAGCGATCTCCCTCACGACTTCGATCACGTGAAGCATTGTAACCGCCTCTGTAGTCACGGCGACCACGATCATCATTTCGGCGGTTCGGAGAGCTTCGAAAATCATCCCGTCGTCCACGCGGCATGTCACGACCACGATCTCGG ]
[+] EMBL CD060656 [ GCACGCGAATCAAAATTCGGTGCAGTGAAACCGCCTCTTGCAGGGCCGCTCCTCAACATGCCACCGCGGGAGTTGTCGAAACCTCCAAATCCACCCGGGCCAGACATCCCACTTGGAAACGGTCCACGATTCGGAGGCCCGAAACGACCACCAGGAGGACCAGCACCATACCTTCCACTGGGCTGACGACCAAATGACTCTCGGTCGCTATTTCGATCGAAGCGATCTCCCTCACGACTACGATCACGTGAAGCATTGTAACCGCCTCGGTAGTCACGGCGACCACGATCATCATTTCGGCGGTTCGGAGAGCTTCGAAAATCATCTCGTCGTCCACGCGGCATGTCACGACCACGATCTCGGCTATCCCGCCCGCGGAAACGTGA]
[-] EMBL CD134008 [ GAAACCTCCAAATCCACCCGGGCCAGACATCCCACTTGGAAACGGTCCACGATTCGGAGGCCCGAAACGACCACCAGGAGGACCACCACCATACCTTCCACTGGGCTGACGACCAAATGACTCTCGGTCGCTATTTCGATCGAAGCGATCTCCCTCACGACTTCGATCACGTGAAGCATTGTAACCGCCTCTGTAGTCACGGCGACCACGATC ]
consensusID : consensus_11063#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1004 fasta sequence
[TCAGGTGGTCCTTTCGGAGGATCTCACGCCTATGGTACC-AGTGATCCTGATAAAACAGCCATGTCACAGAATGAACATTCAAGTACAGAGCACTACTTATAATCCACCATCACAATCAGTTAATCGGCCGCAACCTCAAGTACAACAAACTGCAACATCAACCCAGCAAGCTCAACCGCAAAGTTACGGGTATGGTTATTCTACTCAGAATACAAAACTGGATGGAAGTAGTAATCAAAACGCCCCTCCTGTTAGTCAATCTTATGGTGCTTACAACTATGGATACGGATACGGTACGTACGGGTCGCAAACTGCTCAGCCATCCGCAACCGTTAATCGATGTGCACCCACAACTGGTACCACCCA-GCAGTCACTATATGCCTCAGCTGTTGCTGACAAACCTCAACTAACTCAACAGACAGCCGCGCCAGCAGTTTCTTCCGCCACCACCACTACTGCCACAT-CTGACCATTCGACGCCGGCTGCAGCAGCTTATGCCTCCTATTACTATGGTGCTCCCCAAAGTGCTACTGGAAGTACTCAAGGAGCTGGG-AAGTACGATGCAGCGATGGCTGCTGCACAACAGTTTAACGCGTGGCAACAACAGCAGCAACCTTCGGCTGTGTCTG-GTAGTGTATCCAGCAGCGTCCCAAGTGCTCCAACCGCAACAGTAACACCACAGACACCAGCCGCAAATCCTTATGCAAGCTATTACCCTGGGTATTCTACTTATCCATCTGGGTATGGTACTATCCCAGTTGGCGGTGCTCCTCCAGGTGGGGTCCCAACTGCTGCCGCTCCGCCAGCAATGAGTCAATATTACACCGGTTATCGCTAAAATNGATTTATGAACTTAATTCCTCGTAATACATCTAGTTAAACTCTAATTTGTTTCACATTTCCATTGTGCTATCATTTTGTCTCACTCGTCCTGTCCATTATGCACAAGTGTTACAAATCAATCATTAAAAATTTCTTTATTATAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CD198449 [TCAGGTGGTCCTTTCGGAGGATCTCACGCCTATGGTACC AGTGATCCTGATAAAACAGCCATGTCACAGAATGAACATTCAAGTACAGAGCACTACTTATAATCCACCATCACAATCAGTTAATCGGCCGCAACCTCAAGTACAACAAACTGCAACATCAACCCAGCAAGCTCAACCGCAAAGTTACGGGTATGGTTATTCTACTCAGAATACAAAACTGGATGGAAGTAGTAATCAAAACGCCCCTCCTGTTAGTCAATCTTATGGTGCTTACAACTATGGATACGGATACGGTACGTACGGGTCGCAAACTGCTCAGCCATCCGCAACCGTTAATCGATGTGCACCCACAACTGGTACCACCCA GCAGTCACTATATGCCTCAGCTGTTGCTGACAAACCTCAACTAACTCAACAGACAGCCGCGCCAGCAGTTTCTTCCGNCAACACCACTACTGgc ]
[-] EMBL CD198475 [ TACCAAGTGATCCTGATAAAACAGCCATGTCACAGAATGAACATTCAAGTACAGAGCACTACTTATAATCCACCATCACAATCAGTTAATCGGCCGCAACCTCAAGTACAACAAACTGCAACATCAACCCAGCAAGCTCAACCGCAAAGTTACGGGTATGGTTATTCTACTCAGAATACAAAACTGGATGGAAGTAGTAATCAAAACGCCCCTCCTGTTAGTCAATCTTATGGTGCTTACAACTATGGATACGGATACGGTACGTACGGGTCGCAAACTGCTCAGCCATCCGCAACCGTTAATCGATGTGCACCCACAACTGGTACCACCCA GCAGTCACTATATG ]
[-] EMBL CD063769 [ GTAATCAAAACGCCCCTCCTGTTAGTCAATCTTATGGTGCTTACAACTATGGATACGGATACGGTACGTACGGGTCGCAAACTGCTCAGCCATCCGCAACCGTTAATCGATGTGCACCCACAACTGGTACCACCCA GCAGTCACTATATGCCTCAGCTGTTGCTGACAAACCTCAACTAACTCAACAGACAGCCGCGCCACCAGTTTCTTCCGCCACCACCACTACTGCCACAT CTGACCATTCGACGCCGCATGCAGCAGCTTATGCCTCCTATTACTATGGTGCTCCCCAAAGTGCTACTGGAAGTACTCAAGGAGCTGGG AAGTACGATGCAGCGATCGCTCCCGCACAACAGTTTAACGCGTGGCAACAACAGCAGCAACCTTCGTCTGTCTCTGAGTAGTGTATCCAGCAGCGTCCCAAGTGCTC ]
[-] EMBL CD171067 [ AATCAAAACGCCCCTCCTGTTAGTCAATCTTATGGTGCTTACAACTATGGATACGGATACGGTACGTACGGGTCGCAAACTGCTCAGCCATCCGCAACCGTTAATCGATGTGCACCCACAACTGGTACCACCCA GCAGTCACTATATGCCTCAGCTGTTGCTGACAAACCTCAACTAACTCAACAGACAGCCGCGCCAGCAGTTTCCTCCGCCACCACCACTACTGCCACAT CTGACCATTCGACGCCGGCTGCAGCAGCTTATGCCTCCTATTACTATGGTGCTCCCCAAAGTGCTACTGGAAGTACTCAAGGAGCTGGG AAGTACGATGCAGCGATGGCTGCTGCACAACAGTTTAACGCGTGGCAACAACAGCAGCAACCTTCGGCTGTGTCTG GTAGTGTATCCAGCAGCGTCCCAAGTGCTCCAACCGCAACAGTAACACCACAGACACCAGCCGCA ]
[+] EMBL AI976613 [ ACGGGTCGCAAACTGCTCAGCCATCCGCAACCGTTAATCGATGTGCACCCACAACTGGTACCACCCA GCAGTCACTATATGCCTCAGCTGTTGCTGACAAACCTCAACTAACTCAACAGACAGCCGCGCCAGCAGTTTCTTCCGCCACCACCACTACTGCCACAT CTGACCATTCGACGCCGGCTGCAGCAGCTTATGCCTCCTATTACTATGGTGCTCCCCAAAGTGCTACTGGAAGTACTCAAGGAACTGGGAAAGTACGATGCAGCGATGGCTGCTGCACAACAGTTTAACGCGTGGCAACAACAGCAGCAACCTTCGGCTGTGTCTG GTAGTGTATCCAGCAGCGTCCCAAGTGCTCCAACCGCAACAGTAACACCACAGACACCAGCCGCAAATCCTTATGCAAGCTATTACCCTGNGTATTCTACTTATCCATCTGGGTATGGTACTATCCCAGTTGGCGGTGCTCCTCCAGGTGGGGTCCCAACTGCTGCCGCTCCGCCAGCAATGAGTCAATATTACACCGGTTATCGCTAAAATNGATTTATGAA ]
[+] EMBL CD144604 [ CAACTGGTACCACCCA GCAGTCACTATATGCCTCAGCTGTTGCTGACAAACCTCAACTAACTCAACAGACAGCCGCGCCAGCAGTTTCTTCCGCCACCACCACTACTGCCACATGGTGACCATTCGACGCCGGCTGCAGCAGCTTATGCCTCCTATTACTATGGTGCTCCCCAAAGTGCTACTGGAAGTACTCAAGGAGCTGGG AAGTACGATGCAGCGATGGCTGCTGCACAACAGTTTAACGCGTGGCAACAACAGCAGCAACCTTCGGCTGTGTCTG GTAGTGTATCCAGCAGCGTCCCAAGTGCTCCAACCGCAACAGTAA ]
[+] EMBL CD144735 [ CCACGGAGTCACTATATGCCTCAGCTGTTGCTGACAAACCTCAACTAACTCAACAGACAGCCGCGCCAGCAGTTTCTTCCGCCACCACCACTACTGCCACAT CTGACCATTCGACGCCGGCTGCAGCAGCTTATGCCTCCTATTACTATGGTGCTCCCCAAAGTGCTACTGGAAGTACTCAAGGAGCTGGG AAGTACGATGCAGCGATGGCTGCTGCACAACAGTTTAACGCGTGGCAACAACAGCAGCAACCTTCGGCTGTGTCTG GTAGTGTATCCAGCAGCGTCCCAAGTGCTCCAACCGCAACAGTAACACCACAGACACCAGCCGCAAATCCTTATGCAAGCTATTACCCTGGGTATTCTACTTATCCATCTGGGTATGGTACTATCCCAGTTGGCGGTGCTCCTCCgtg ]
[-] EMBL CD144693 [ CACTATATGCCTCAGCTGTTGCTGACAAACCTCAACTAACTCAACAGACAGCCGCGCCAGCAGTTTCTTCCGCCACCACCACTACTGCCACAT CTGACCATTCGACGCCGGCTGCAGCAGCTTATGCCTCCTATTACTATGGTGCTCCCCAAAGTGCTACTGGAAGTACTCAAGGAGCTGGG AAGTACGATGCAGCGATGGCTGCTGCACAACAGTTTAACGCGTGGCAACAACAGCAGCAACCTTCGGCTGTGTCTG GTAGTGTATCCAGCAGCGTCCCAAGTGCTCCAACCGCAACAGTAACACCACAGACACCAGCCGCAAATCCTTATGCAAGCTATTACCCTGGGTATTCTACTTATCCATCTGGGTATGGTACTATCCCAGTTGGCGGTGCTCCTCC GTGG ]
[-] EMBL CD158510 [ AGCCGCGCCAGCAGTTTCTTCCGCCACCACCACTACTGCCACAT CTGACCATTCGACGCCGGCTGCAGCAGCTTATGCCTCCTATTACTATGGTGCTCCCCAAAGTGCTACTGGAAGTACTCAAGGAGCTGGG AAGTACGATGCAGCGATGGCTGCTGCACAACAGTCTAACGCGTGGCAACAACAGCAGCAACCTTCGGCTGTGTCTG GTAGTGTATCCAGCAGCGTCCCAAGTGCTCCAACCGCAACAGTAGCACCACAGACACCAGCCGCAAATCCTTATGCAAGCTATTACCCTGGGTATTCTACTTATCCATCTGGGTATGGTACTATCCCAGTTGGCGGTGCTCCTCCAGGTGGGGT ]
[-] EMBL AI395035 [ CCAGGTGGGGTCCCAACTGCTGCCGCTCCGCCAGCAATGAGTCAATATTACACCGGTTATCGCTAAAATTGATTTATGAACTTAATTCCTCGTAATACATCTAGTTAAACTCTAATTTGTTTCACATTTCCATTGTGCTATCATTTTGTCTCACTCGTCCTGTCCATTATGCACAAGTGTTACAAATCAATCATTAAAAATTTCTTTATTATAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_11063#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 322 fasta sequence
[CTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAAGGATATCGAGTGTCTAATCAAGTTCCAGAATATCCGTAATGTGTGGCGGGATTCC]
[+] EMBL CD157466 [CTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAAGGATATCGAGTGTCTAATCAAGTTCCAGAATATCCGTAATGTGTGGCGGGATTCC]
consensusID : consensus_11063#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 253 fasta sequence
[GCCTGGCAGGTCGACTTTAGAAGGATCCCCCTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAAC]
[+] EMBL CD063408 [GCCTGGCAGGTCGACTTTAGAAGGATCCCCCTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11063#2 ------------------------------------------------------------
consensus_11063#3 ------------------------------------------------------------
consensus_11063#1 ------------------------------------------------------------
consensus_11063#0 AGCTGGAACTATCTGTACTTGAATGTTCATTCTGTGACATGGCTGTTTTATCAGGATCAC 60
consensus_11063#2 ------------------------------------------------------------
consensus_11063#3 ------------------------------------------------------------
consensus_11063#1 ------------------------------------------------------------
consensus_11063#0 TGGTACCATAGGCGTGAGATCCTCCGAAAGGACCACCTGAATTTTGTTGCATTCCAGGTC 120
consensus_11063#2 ------------------------------------------------------------
consensus_11063#3 ------------------------------------------------------------
consensus_11063#1 ------------------------------------------------------------
consensus_11063#0 TCCCAGATCTGTCTGACGCCATACCTCCACTGTAAGGATCTGAGCTAGGGTTTGTGAAAT 180
consensus_11063#2 ------------------------------------------------------------
consensus_11063#3 ------------------------------------------------------------
consensus_11063#1 ------------------------------------------------------------
consensus_11063#0 TACCCTGATCACCAGTATATGAGTTGGGATAATTAGAAGCAGAATTAGGATTCCCATATG 240
consensus_11063#2 ------------------------------------------------------------
consensus_11063#3 ------------------------------------------------------------
consensus_11063#1 ------------TCAGGTGGTCCTTTCGGAGGATCTCACGCCTATGGTACCAGTGATCCT 48
consensus_11063#0 AAGGGAGACTCCCTCGATTGTAACCACCACCAGGCGCATTTGGATATCCTGCTGGACCAC 300
consensus_11063#2 ------------------------------------------------------------
consensus_11063#3 ------------------------------------------------------------
consensus_11063#1 GATAAAACAGCCATGTCACAGAATGAACATTCAAGTACAGAGCACTACTTATAATCCACC 108
consensus_11063#0 CTGAGAACGGAGGATTGCCTCTTTGATAGGCAGAATAACTACCACCAGAGGGCTTTTGCA 360
consensus_11063#2 ------------------------------------------------------------
consensus_11063#3 ------------------------------------------------------------
consensus_11063#1 ATCACAATCAGTTAATCGGCCGCAACCTCAAGTACAACAAACTGCAACATCAACCCAGCA 168
consensus_11063#0 ATGCGTTTGCGTTGTAGGGACCTGGTCCGCCAAAACGTCTGTTTCGATAATCATC-ATTT 419
consensus_11063#2 ------------------------------------------------------------
consensus_11063#3 ------------------------------------------------------------
consensus_11063#1 AGCTCAACCGCAAAGTTACGGGTATGGTTATTCTACTCAGAATACAAAACTGGATGGAAG 228
consensus_11063#0 GGTGGCCCCGGATATTGCTCCTCAGCTGGATTTTGATAACCTTCCGCACCACCGTACATA 479
consensus_11063#2 ------------------------------------------------------------
consensus_11063#3 ------------------------------------------------------------
consensus_11063#1 TAGTAATCAAAACGCCCCTCCTGTTAGTCAATCTTATGGTGCTTACAACTATGGATACGG 288
consensus_11063#0 TTATACTGTTGGCTATCGTCGGGAAATCCGCCAATCATATCACGATCAGGCTGAGCACCG 539
consensus_11063#2 ------------------------------------------------------------
consensus_11063#3 ------------------------------------------------------------
consensus_11063#1 ATACGGTACGTACGGGTCGCAAACTGCTCAGCCATCCGCAACCGTTAATCGATGTGCACC 348
consensus_11063#0 CCACGACCGGAAACGGGTGCGTTACGACCCAGTTGACCACGATCAACACCCCTGTCAGTA 599
consensus_11063#2 ------------------------------------------------------------
consensus_11063#3 ------------------------------------------------------------
consensus_11063#1 CACAACTGGTACCACCCAGCAGTCACTATATGCCTCAGCTGTTGCTGACAAACCTCAACT 408
consensus_11063#0 TTAGCTGCGCGTCCTGGGGCGACTGCCCCACGTCCCATAGACGTCCCACCACGACCGGGG 659
consensus_11063#2 ------------------------------------------------------------
consensus_11063#3 ------------------------------------------------------------
consensus_11063#1 AACTCAACAGACAGCCGCGCCAGCAGTTTCTTCCGCCACCACCACTACTGCCACATCTGA 468
consensus_11063#0 GCTCCGCGAGATCCCTGCATTTGGA--CACCGCGACCACTACCTCCGTACCCTCCTCTAA 717
consensus_11063#2 ------------------------------------------------------------
consensus_11063#3 ------------------------------------------------------------
consensus_11063#1 CCATTCGACGCCGGCTGCAGCAGCTTATGCCTCCTATTACTATGGTGCTCCCCAAAGTGC 528
consensus_11063#0 AGCCTCCACTCATTGGGCCGCCTTCATACGGCGGCTGAGAAAGTGAGGCTTCGCTCATAT 777
consensus_11063#2 ------------------------------------------------------------
consensus_11063#3 ------------------------------------------------------------
consensus_11063#1 TACTGGAAGTACTCAAGGAGCTGGGAAGTACGATGCAGCGATGGCTGCTGCACAACAGTT 588
consensus_11063#0 CATAGGCATTGCCAATCGGCTCTGCATCACCTGCATTACCATCAAAGCGATTATACATAG 837
consensus_11063#2 ------------------------------------------------------------
consensus_11063#3 ------------------------------------------------------------
consensus_11063#1 TAACGCGTGGCAACAACAGCAGCAACCTTCGGCTGTGTCTGGTAGTGTATCCAGCAGCGT 648
consensus_11063#0 TGTCATTTGGCCCACCATAACCTGGGTTCCCTCGGTCCATTGAACCACGATAGGCACCTC 897
consensus_11063#2 --------CTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTC--GATACAACTACA 50
consensus_11063#3 -------------------------GCCTGGCAGGTCGACTTTAGAAGGATCCCCCTACA 35
consensus_11063#1 CCCAAGTGCTCCAACCGCAACAGTAACACCACAGACACCAGCCGCAAATCCTTATGCAAG 708
consensus_11063#0 GTCCAGCACGCGAATCAAAATTCGGTGCAGTGAAACCGCCTCTTGCAGGGCCGCTCCTCA 957
consensus_11063#2 CCTCTTCACAGTCCACTCTCTCCA--TCGCCAAACCAACACCA--CCGTCTTCGCTCCTG 106
consensus_11063#3 CCTCTTCACAGTCCACTCTCTCCA--TCGCCAAACCAACACCA--CCGTCTTCGCTCCTG 91
consensus_11063#1 CTATTACCCTGGGTATTCTACTTA--TCCATCTGGGTATGGTA--CTATCCCAGTTGGCG 764
consensus_11063#0 TCATGCCACCGCGGGAGTTGTCGAAACCTCCAAATCCACCCGGGCCAGACATCCCACTTG 1017
* * * * * * * * * *
consensus_11063#2 AAACTCATCAACCAACCA----CTCTTGTCG-CCGCCACCGCCGCCGCCACAAAAACTAT 161
consensus_11063#3 AAACTCATCAACCAACCA----CTCTTGTCG-CCGCCACCGCCGCCGCCACAAAAACTAT 146
consensus_11063#1 GTGCTCCTCCAGGTGGGG----TCCCAACTG-CTGCCGCT-CCGCCAGCAATGAGTCAAT 818
consensus_11063#0 GAAACGGTCCACGATTCGGAGGCCCGAAACGACCACCAGGAGGACCACCACCATACCTTC 1077
** * * * * ** ** ** *
consensus_11063#2 -ACTCC-CGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCT-CGCTCACATCTCT 218
consensus_11063#3 -ACTCC-CGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCT-CGCTCACATCTCT 203
consensus_11063#1 -ATTACACCGGTTATCGCTAAAATN-GATTTATGAACTTAATTCCT-CG-TAATACATCT 874
consensus_11063#0 CACTGGGCTGACGACCAAATGACTCTCGGTCGCTATTTCGATCGAAGCGATCTCCCTCAC 1137
* * * * * * * * * ** *
consensus_11063#2 CGATACAACTACACCT--CTTCACAGTCCACTCTCTCCATC-----GCCAAACCAAGGAT 271
consensus_11063#3 CGATACAACTACACCT--CTTCACAGTCCACTCTCTCCATC-----GCCAAACCAAC--- 253
consensus_11063#1 AGTTAAACTCTAATTTG-TTTCACATTTCCATTGTGCTATCATTTTGTCTCACTCGTCCT 933
consensus_11063#0 GACTTCGATCACGTGAAGCATTGTAACCGCCTCTGTAGTCACGGCGACCACGATCATCAT 1197
* * * * *
consensus_11063#2 ATCGAGTGTCTAATCAAGTTCCAGAATATCCGTAATGTGTGGCGGGATTCC--------- 322
consensus_11063#3 ------------------------------------------------------------
consensus_11063#1 GTCCATTATGCACAAGTGTTACAAATCAATCATTAAAAATTTCTTTATTATAAAAAAAAA 993
consensus_11063#0 TTCGGCGGTTCGGAGAGCTTCGAAAATCATCCCGTCGTCCACGCGGCATGTCACGACCAC 1257
consensus_11063#2 -------------------------------
consensus_11063#3 -------------------------------
consensus_11063#1 AAAAAAAAAAA-------------------- 1004
consensus_11063#0 GATCTCGGCTATCCCGCCCGCGGAAACGTGA 1288
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||