|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11071#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 28 consensus length = 1630 fasta sequence
[ACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGAAGAAATGAATATTGCTACGTAAACACAAGATAATACCGTATAATAGAAATTACAGAACTATGTAAGTATAATTGGATTGTAAGCAATAACATCACAACTTGATATTTTAAACACTGATAATTTTTCTATAGAAGAAGCCACCAAGTTTTATCCCGAATACGATTGTAATCAAGCATGGTTTCCACTGGACCGATAGACGCGACAGCAGGGCATTTATCAAAAAAGTACTTCATGCATATTTCCTTAATATGTTCAGCATTGAGCGCGTCAATTCTGGCTAGCAATTCAGTTATAGGTATACGACGACCATACACCAACATGTGCCGACCAATCTCTTCACATATAGGCGTGGTACCATCTAACTGCAAAAGGAGATGTGTTTTCAATTGGTTCTTTGCTCTGTCGATTTCATGCTGAGTAACGTGAGTACACATACGGACAAATTCTTTAAGGAATTCTCCAACAGATTCACCCAAACCCATTTTTTCTGCGGTTAAGTAAACTCCCCACAAAGAAGTATCATGGTAGCAAGTAAAGAAATGTTGGAAACTGTGTACCGAATTTTCCAT-AAA-AAACTTGGAGGCCAGTTTACTGGCAACATTAAATCCTCCTCCATAACTTCTATCCCAAGCACCATGCAAACTGCTGGCAACCATTAGTGCTAATGTGTCTGAACTTTGCCAACCAGGACCCTCGAACGCTATCGCAGCATGAGCTACTGGCATAGCATCATCTCTGTCACGAATTTCAGAGCCTGTAAAACGACAGCGTTGTAGGCTCGGTACCCCTTCACCTTCCTGATAGGATGCCTGGAAATCGCCAAAATGTTTCTCCGCGAGGTCGCATAGATGCTTATGGTCGATTCCTCCTGCAGCACTGAGCACCATTCGTGGTGCTTTATAGTTGTGTTTGATAAAATTCTTCATATCACTGGCTTTCAAAGATTTGACATTTTCTACAGGTCCAAGAAT-TGTCCTTCCAAGAGGAGTCCCTTGATAGGCAGTTGCATGCAGGTAATCAAAGACGACTTCCTGGTAATTGCTCTCAATTTCCTCCATTTCCCGTAAAATGACCCCTCTTTCACGTTCAACCTGACTACTCTCAAACTTGCTGTTTTTTAATATATCTGATAGTAATTCAACCGCCCAAGGTAGATCCTCAACAAAACACTTCGCATAATACACCGTCATCTCACGAGATGTGTACGCATTTAGATGAGCACCTTTGTCTTCCACTTCAAGTTCTAAAGACTGCTGACTTCTCTTTTCAGTCCCCTTGAAAGCCATGTGCTCAAGGAAATGAGCAACACCATTATTATGTTCTGTCTCATATCGACTACCGACATCCACCCAAACACCAACCGTGCATGTAGGAGTATTCCAGTTTTCAGAAGCTATCCGAAAACCATTACCTTCCAAAGTAGTCACTTTCGTCTCTGGCATATGAACCGTTTCAAATAAAGGAACATATTTGGTGGCC-GAACCAATCTTCCTATGACGTATTGA-GGAAGCAAATGGAGCTAGTCTGCGGGAAGCAAATCGAAGTGCCATACCCAGCACGTAACGAA]
[+] EMBL AI976679 [ACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGAAGAAATGAATATTGCTACGTAAACACAAGATAATACCGTATAATAGAAATTACAGAACTATGTAAGTATAATTGGATTGTAAGCAATAACATTACAACTTGATATTTTAAACACTGATAATTTTTCTATAGAAGAAGCCACCAAGTTTTATCCCGAATACGATTGTAATCAAGCATGGTTTCCACTGGACCGATAGACGCGACAGCAGGGCATTTATCAAAAAAGTACTTCATGCATATTTCCTTAATATGTTCAGCATTGAGCGCGTCAATTCTGGCTAGCAATTCAGTTATAGGTATACGACGACCATACACCAACATGTGCCGACCAATCTCTTTACATATAGGCGTGGTACCATCTAACTGCAAAAGGAGATGTGTTTTCAATTGGTTCTTTGCTCTGTCGATTTCATGCTGAGTAACGTGAGTACACATACGGACAAATTCTTTAAGGAATTCTTCAACAGATTCA ]
[+] EMBL CD076057 [ ACACAAGATAATACCGTATAATAGAAATTACAGAACTATGTAAGTATAATTGGATTGTAAGCAATAACATCACAACTTGATATTTTAAACACTGATAATTTTTCTATAGAAGAAGCCACCAAGTTTTATCCCGAATACGATTGTAATCAAGCATGGTTTCCACTGGACCGATAGACGCGACAGCAGGGCATTTATCAAAAAAGTACTTCATGCATATTTCCTTAATATGTTCAGCATTGAGCGCGTCAATTCTGGCTAGCAATTCAGTTATAGGTATACGACGACCATACACCAACATGTGCCGACCAATCTCTTCACATATAGGCGTGGTACCATCTAACTGCAAAAGGAGATGTGTTTTCAATTGGTTCTTTGCTCTGTCGATTTCATGCTGAGTAACGTGAGTACACATACGGACAAATTCTTTAAGGAATTCTCCAACAGATTCACCCAAACCCATTTTTTCTGCGGTTAAGTAAACTCCCCACAAAGAAGTATCATGGTAGCAAGTAAAGAAATGTTGGAAACTGTGTACCGAATTTTCCAT AAA AAACTTGGAGGCCAGTTTACTGGCAACATTAAATCCTNCTCCA ]
[-] EMBL SM714 [ acAGATAATACCGTATAATAGAAATTACAGAACTATGTAAGTATAATTGGANTGTAAGCAATAACATCACAACNTGATA TTTAAACACTAATAATTTTTCTATAGCAGAAGCCACCGA TTTTATCCCG ATACG TTGTAATCAAGCATG ]
[-] EMBL CD147669 [ TCCCGAATACGATTGTAATCAAGCATGGTTTCCACTGGACCGATAGACGCGACAGCAGGGCATTTATCAAAAAAGTACTTCATGCATATTTCCTTAATATGTTCAGCATTGAGCGCGTCAATTCTGGCTAGCAATTCAGTTATAGGTATACGACGACCATACACCAACATGTGCCGACCAATCTCTTCACATATAGGCGTGGTACCATCTAACTGCAAAAGGAGATGTGTTTTCAATTTGTTCTTTGCTCTGTCGA ]
[-] EMBL CD155389 [ ACGCGACAGCAGGGCTTTTATCAAAAAAGTACTTCATGCATATTTCCTTAATATGTTCAGCATTGAGCGCGTCAATTCTGGCTAGCAATTCAGTTATAGGTATACGACGACCATACACCAACATGTGCCGACCAATCTCTTCACATATAGGCGTGGTACCATCTAACTGCAAAAGGAGATGTGTTTTCAATTGGTTCTTTGCTCTGTCGATTTCATGCTGAGTAACGTGAGTACACATACGGACAAATTCTTTAAGGAATTCTCCAACAGATTCACCCAAACCCATTTTTTCTGCGGTTAAGTAAACTCCCCACAAAGAAGTATCATGGTAGCAAGTAAAGAAATGTTGGAAACTGTGTACCGAATTTTCCAT AAA AAACTTGGAGGCCAGTTTACTGGCAACATTAAATCC ]
[-] EMBL CD124402 [ cttaCGTCAATTCTGGCTAGCAATTCAGTTATAGGTATACGACGACCATACACCAACATGTGCCGACCAATCTCTTCACATATAGGCGTGGTACCATCTAACTGCAAAAGGAGATGTGTTTTCAATTGGTTCTTTGCTCTGTCGATTTCATGCTGAGTAACGTGAGTACACATACGGACAAATTCTTTAAGGAATTCTCCAACAGATTCACCCAAACCCATTTTTTCTGCGGTTAAGTAAACTTCCCACAAAGAAGTATCATGGTAGCAAGTAAAGAAATGTTGGAAACTGTGTACCGAATTTTCCAT AAAGTAACTTGGAGGCCAGTTTACTGGCAACATTAAATCCTCCTCCATAACTTGTATCCCAAGCGCCAGGCAAACTGCTGGCAACCATTAGTGCTAATGTGTCTGATCTTTGCCAACCAGGACCCTCGAACGCTATCGCAGCATGAGCTACTGGCATAGCATCATCTCTGTCACGAATTTCAGAGCCTGTAAAACGACAGCGTTGTAGGCTCGGTACCCCTTCACCTTCGTGATAGGATGCCTGGAAATCGCCATAATGTTTCTCCGCGAGGTCGCATAGATGCTTATGGTCGATTCg ]
[-] EMBL CD116324 [ gaaCTTTGCTCTGTCGATTTCATGCTGAGTAACGTGAGTACACATACGGACAAATTCTTTAAGGAATTCTCCAACAGATTCACCCAAACCCATTTTTTCTGCGGTTAAGTAAACTCCCCACAAAGAAGTATCATGGTAGCAAGTAAAGAAATGTTGGAAACTGTGTACCGAATTTTCCATAAAA AAACTTGGAGGCCAGTTTACTGGCAACATTAAATCCTCCTCCATAACTTCTATCCCAAGCAACATGCAAACTGCTGGCAACCATTAGTGCTAATGTGTCTGAACTTTGCCAACCAGGACCCTCGAACGCTATCGCAGCATGAGCTACTGGCATAGCATCATCTCTGTCACGAATTTCAGAGCCTGTAAAACGACAGCGTTGTAGGCTCGGTACCCCTTC ]
[-] EMBL CD112255 [ ATGCTGAGTAACGTGAGTACACATACGGACAAATTCTTTAAGGAATTCTCCAACAGATTCACCCAAACCCATTTTTTCTGCGGTTAAGTAAACTCCCCACAAAGAAGTATCATGGTAGCAAGTAAAGAAATGTTGGAAACTGTGTACCGAATTTTCCAT AAA AAACTTGGAGGCCAGTTTACTGGCAACATTAAATCCTCCTCCATAACTTCTATCCCAAGCACCATGCAAACTGCTGGCAACCATTAGTGCTAATGTGTCTGAACTTTGCCAACCAGGACCCTCGAACGCTATCGCAGCATGAGCTACTGGCATAGCATCATCTCTGTCACGAATTTCAGAGCCTGTAAAACGACAGCGTTGTAGGCTCGGTACCCCTTCACCTTCCTGATAGGATGCCTGGAAATCGCCAAAATGTTTCTCCGCGAGGTCGCATAGATGCTTATGGTCGATTCCTCC ]
[-] EMBL CD110786 [ ATGCTGAGTAACGTGAGTACACATACGGACAAATTCTTTAAGGAATTCTCCAACAGATTCACCCAAACCCATTTCTTCTGCGGTTAAGTAAACTCCCCACAAAGAAGTATCATGGTAGCAAGTAAAGAAACGTTGGAAACTGTGTACCGAATTTTCCAT AAA AAACTTGGAGGCCAGTTTACTGGCAACATTAAATCCTCCTCCATAGCTTCTATCCCAAGCACCATGCAAACTGCTGGCAACCATTAGTGCTAATGTGTCTGAACTTTGCCAACCAGGACCCTCGAACGCTATCGCAGCATG ]
[-] EMBL CD146427 [ CGTGAGTACACATACGGACAAATTCTTTAAGGAATTCTCCAACAGATTCACCCAAACCCATTTTTTCTGCGGTTAAGTAAACTCCCCACAAAGAAGTATCATGGTAGCAAGTAAAGAAATGTTGGAAACTGTGTACCGAATTTTCCAT AAA AAACTTGGAGGCCAGTTTACTGGCAACATTAAATCCTCCTCCATAACTTCTATCCCAAGCACCATGCAAACTGCTGGCAACCATTAGTGCTAATGTGCCTGAACTTTGCCAACCAGGACCCTCGAACGCTATCGCAGCATGAGCTACTGGCATAGCATCATCTCTGTCACGAATTTCAGAGCCTGTAAAACGACAGCGT ]
[+] EMBL CD143119 [ AAATTCTTTAAGGAATTCTCCAACAGATTCACCCAAACCCATTTTTTCTGCGGTTAAGTAAACTCCCCACAAAGAAGTATCATGGTAGCAAGTAAAGAAACGTTGGAAACTGTGTACCGAATTTTCCATAAAA AAACTTGGAGGCCAGTTTACTGGCAACATTAAATCCTCCTCCATAACTTCTATCCCAAGCACCATGCAAACTGCTGGCAACCATTAGTGCTAATGTGTCTGAACTTAGCCAACCAGGACCCTCGAACGCTATCGCAGCATGAGCTACTGGCATAGCATCATCTCTGTCACGAATTTCAGAGCCTGTAAAACGACAGCGTTGTAGGCTCGGTACCCCTTCACCTTCCTGATAGNATGCCTGGAAATCGCCAAAATGTTTCTCCGCGAGNTCGCATAGAT ]
[+] EMBL CD146218 [ TATCATGGTAGCAAGTAAAGAAATGTTGGAAACTGTGTACCGAATTTTCCAT AAA AAACTTGGAGGCCAGTTTACTGGCAACATTAAATCCTCCTCCATAACTTCTATCCCAAGCACCATGCAAACTGCTGGCAACCATTAGTGCTAATGTGTCTGAACTTTGCCAACCAGGACCCTCGAACGCTATCGCAGCATGAGCTACTGGCATAGCATCATCTCTGTCACGAATTTCAGAGCCTGTAAAACGACAGCGTTGTAGGCTCGGTACCCCTTCACCTTCCTGATAGGATGCCTGGAAATCGCCAAAATGTTTCTCCGCGAGGTCGCCTAG ]
[-] EMBL CD092295 [ CTACTGGCATAGCATCATCTCTGTCACGAATTTCAGAGCCTGTAAAACGACAGCGTTGTAGGCTCGGTACCCCTTCACCTTCCTGATAGGATGCCTGGAAATCGCCAAAATGTTTCTCCGCGAGGTCGCATAGATGCTTATGGTCGATTCCTCCTGCAGCACTGAGCACCATTCGTGGTGCTTTATAGTTGTGTTTGATAAAATTCTTCATATCACTGGCTTTCAAAGATTTGACATTTTCTACAGGTCCAAGAAT TGTCCTTCCAAGAGGAGTCCCTTGATAGGCAGTTGTATGAAGGcn ]
[-] EMBL CD115842 [ TGTAAAACGAGAGCGTTGTAGGCTCGGTACCCCTTCACCTTCCTGATAGGATGCCTGGAAATCGCCAAAATGTTTCTCCGCGAGGTCGCATAGATGCTTATGGTCGATTCCTCCTGCAGCACTGAGCACCATTCGTGGTGCTTTATAGTTGTGTTTGATAAAATTCTTCATATCACTGGCTTTCAAAGATTTGACATTTTCTGCAGGTCCAAGAAT TGTCCTTCCAAGAGGAGTCCCTTGATAGGCAGTTGCATGCAGGTAATCAAAGACGACTTCCTGGTAATTGCTCTCAATTTCCTCCATTTCCCGTAAAATGACCCCTCTTTCACGTTCAACCTGACTACTCTCAAACTTGCTGTTTTTTAATATATCTGATAGTAATTCAACC ]
[-] EMBL CD122110 [ ATAAAATTCTTCATATCACTGGCTTTCAAAGATTTGACATTTTCTACAGGTCCAAGAAT TGTCCTTCCAAGAGGAGTCCCTTGATAGGCAGTTGCATGCAGGTAATCAAAGACGACTTCCTGGTAATTGCTCTCAATTTCCTCCATTTCCCGTAAAATGACCCCTCTTTCACGTTCAACCTGACTACTCTCAAACTTGCTGTTTTTCAATATATCTGATAGTAATTCAACCGCCCAAGGTAGATCCTCAACAAAACACTTCGCATAATACACCGTCATCTCACGAGATGTGTACGCATTTAGATGAGCACCTTTGTCTTCCACTTCAAGTTCTAAAGACTGCTGACTTCTCTTTTCAGTCCCCTTGAAAGCCATGTGCTCAAGGAAATGAGCAACACCATTATTATGTTCTGTCTCATATCGACTACCGACATCCACCCAAACACCAACCGTGCATGTAGGAGTATTCCAGTTTTCAGAAGCTATCCGAAAACCATTACTTTCCAAAGTAGTCACCTTCGTCTCTGGCATATGAACCGTTTCAAATAAAGGAACATATTTGGTGGCC GTACCAA ]
[-] EMBL CD158219 [ TCAAAGATTGNACATTTTCTACAGGTCC AGAATGTCCCCTTCCAAGAGGAGTCNCCTGATAGGCAGTTGCATGCAGGTAATCAAAGACGACTTCCTGGTAATTGCTCTCAATTTCCTCCATTTCCCGTAAAATGACCCCTCTTTCACGTTCAACCTGACTACTCTCAAACTTGCTGTTTTTTAATATATCTGATAGTAATTCAACCGCCCAAGGTAGATCCTCAACAAAACACTTCGCATAATACACCGTCATCTCACGAGATGTGTACGCATTTAGATGAGCACCTTTGTCTTCCACTTCAAGTTCTAAAGACTGCTGACTTCTCTTTTCAGTCCCCTTGAAAGCCATGTGCTCAAGGAAATGAGCAACACCATTATTATGTTCTGTCTCATATCGACTACCGACATCCACCCAAACACCAACCGTGCATGTAGGAGTATTCCAGTTTTCAGA ]
[+] EMBL CD119791 [ AAT TGTCCTTCCAAGAGGAGTCCCTTGATAGGCAGTTGCATGCAGGTAATCAAAGACGACTTCCTGGTAATTGCTCTCAATTTCCTCCATTTCCCGTAAAATGACCCCTCTTTCACGTTCAACCTGACTACTCTCAAACTTGCTGTTTTTTAATATATCTGATAGTAATTCAACCGCCCAAGGTAGATCCTCAACAAAACACTTCGCATAATACACCGTCATCTCACGAGATGTGTACGCATTTAGATGAGCACCTTTGT ]
[-] EMBL AI068228 [ AGTCCTTTGATAGGCAGTTGCATGCAGGTAATCAAAGACGACTTCCTGGTAATTGCTATCAATTTCATCCATTTCCCGTAAAATGACCCCTCTTTCACGTTCAACCTGACTACTCTCAAACTTGCTGTTTTTTAATATATCTGATAGTAATTCAACCGCCCAAGGTAGATCCTCAACAAAACACTTCGCATAATACACCGTCATCTCACGAGATGTGTACGCATTTAGATGAGCACCTTTGTCTTCCACTTCAAGTTGTAAAGACTGCTGACTTCTCTTTTCAGTCCCCTTGAAAGCCATGTGCTCAAGGAAATGAGCAACACCATTATTATGTTCTGTCTCATATCGACTACCGACATCCACCCAAACACCAACCGTGCATGTAGGAGTATTCCAGTTTTCAGAAGCTATCCGAAAACCATTACTTTCCAAAGTAGTCACCTTCGTCTCTGGCATATGAACCGTTCCAAATAAAGGAACATATTTGGTGGCC GAACCAATTTTCCTATGACGTATTGA GGAAGCAAATGGAGCTAGTCTGCGGGAAGCAAATC ]
[+] EMBL CD133397 [ TCAATTTCCTCCATTTCCCGTAAAATGACCCCTCTTTCACGTTCAACCTGACTACTCTCAAACTTGCTGTTTTTTAATATATCTGATAGTAATTCAACCGCCCAAGGTAGATCCTCAACAAAACACTTCGCATAATACACCGTCATCTCACGAGATGTGTACGCATTTAGATGAGCACCTTTGTCTTCCACTTCAAGTTCTAAAGACTGCTGACTTCTCTTTTCAGTCCCCTTGAAAGCCATGTGCTCAAGGAAATGAGCAACACCATTATTATGTTCTGTCTCATATCGACTACCGACATCCACCCAAACACCAACCGTGCATGTAGGAGTATTCCAGTTTTCAGAAGCTATCCGAAAACCATTACCTTCCAAAGTAGTCACTTTCGTCTCTGGCATATGGACCGTTTCAAATAAAGGAACATATTTGGTGGCC GAACCAATCTTCCTATGACGTATTGANNGAAGC AATGGAGCTAGTCTGCGGNAAGCANATCGAAGTGCCATACCCAGCACGTAACGA ]
[-] EMBL CD133517 [ CAATTTCCTCCATGTCCCGTAAAATGACCCCTCTTTCACGTTCAACCTGACTACTCTCAAACTTGCTGTTTTTTAATATATCTGATAGTAATTCAACCGCCCAAGGTAGATCCTCAACAAAACACTTCGCATAATACACCGTCATCTCACGAGATGTGTACGCATTTAGATGAGCACCTTTGTCTTCCACTTCAAGTTATAAAGACTGCTGACTTCTCTTTTCAGTCCCCTTGAAAGCCATGTGCTCAAGGAAATGAGCAACACCATTATTATGTTCTGTCTCATATCGACTACCGACATCCACCCAAACACCAACCGTGCATGTAGGAGTATTCCAGTTTTCAGAAGCTATCCGAAAACCATTACCTTCCAAAGTAGTCACTTTCGTCTCTGGCATATGAACCGTTTCAAATAAAGGAACATATTTGGT ]
[+] EMBL CD068076 [ ATTT CTCCATTTCCCGTAAAATGACCCCTCTTTCACGTTCAACCTGACTACTCTCAAACTTGCCGTTTTTTAATATATCTGATAGTAATTCAACCGCCCAAGGTAGATCCTCAACAAAACACTTCGCATAATACACCGTCATCTCAC ]
[+] EMBL CD133428 [ TTCACGTTCAACCTGACTACTCTCAAACTTGCTGTTTTTTAATATATCTGATAGTAATTCAACCGCCCAAGGTAGATCCTCAACAAAACACTTCGCATAATACACCGTCATCTCACGAGATGTGTACGCATTTAGATGAGCACCTTTGTCTTCCACTTCAAGTTCTAAAGACTGCTGACTTCTCTTTTCAGTCCCCTTGAAAGCCATGTGCTCAAGGAAATGAGCAACACCATTATTATGTTCTGTCTCATATCGACTACCGACATCCACCCAAACACCAACCGTGCATGTAGGAGTATTCCAGTTTTCAGAAGCTATCCGAAAACCATTACCTTCCAAAGTAGTCACTTTCGTCTCTGGCATATGAACCGTTTCAAATAAAGGAACATATTTGGTGGCC GAACCAATCTTCCTATGACGTATTGA GGAAGCAAATGGAGCTAGTCTGCGGGAAGCAAATCGAAGTGCCATACCCAGCACGTAACGAA]
[+] EMBL CD163799 [ ACTTGCTGTTTTTTAATATATCTGATAGTAATTCAACCGCCCAAGGTAGATCCTCAACAAAACACTTCGCATAATACACCGTCATCTCACGAGATGTGTACGCATTTAGATGAGCACCTTTGTCTTCCACTTCAAGTTCTAAAGACTGCTGACTTCTCTTTTCAGTCCCCTTGAAAGCCATGTGCTCAAGGAAATGAGCAACACCATTATTATGTTCTGTCTCATATCGACTACCGACATCCACCCAAACACCAACCGTGCATGTAGGAGTATTCCAGTTTTCAGAAGCTATCCGAAAACCATTACCTTCCAAAGTAGTCACTTTCGTCTCTGGCATATGAACCGTTTCAAATAAAGGAACATATTTGGTGGCC GAACCAATCTTCCTATGACGT ]
[-] EMBL CD146473 [ CTTGCTGTTGTTTAATATATCTGATAGTAATTCAACCGCCCAAGGTAGATCCTCAACAAAACACTTCGCATAATACACCATCATCTCACGAGATGTGTACGCATTTAGATGAGCACCTTTGTCTTCCACTTCAAGTTCTAAAGACTGCTGACTTCTCTTTTCAGTCCCCTTGAAAGC ]
[-] EMBL CD116915 [ TTAATATATCTGATAGTAATTCAACCGCCCAAGGTAGATCCTCAACAAAACACTTCGCATAATACACCGTCATCTCACGAGATGTGTACGCATTTAGATGAGCACCTTTGTCTTCCACTTCAAGTTATAAAGACTGCTGACTTCTCTTTTCAGTCCCCTTGAAAGCCATGTGCTCAAGGAAATGAGCAACACCATTACTATGTTCTGTCTCATATCGACTACCGACATCCACCCAAACACCAACCGTGCATGTAGGAGTATTCCAGTTTTCAGAAGCTATCCGAAAACCATTACTTTCCAAAGTAGTCACCTTCGTCTGTGGCATATGAA ]
[-] EMBL CD098311 [ ATGTGTACGCATTCAGATGAGCACCTTTGTCTTCCACTTCAAGTTCTAAAGACTGCTGACTTCTCTTTTCAGTCCCCTTGAAAGCCATGTGCTCAAGGAAATGAGCAACACCATTATTATGTTCTGTCTCATATCGACTACCGACATCCACCCAAACACCAACCGTGCATGTAGGAGTATTCCAGTTTTCAGAAGCTATCCGAAAACCATTACCTTCCAAAGTAGTCACTTTCGTCTCTGGCATATGAACCGTTTCAAATAAAGGAACATATTTGGTGGCC GAACCAATCTTCCTATGACGTATTGA GGAAGCAAATGGAGCTAGTCTGCGGGAAGCAAATCG ]
[+] EMBL CD157216 [ GTGTACGCATTTAGATGAGCACCTTTGTCTTCCACTTCAAGTTCTAAAGACTGCTGACTTCTCTTTTCAGTCCCCTTGAAAGCCATGTGCTCAAGGAAATGAGCAACACCATTATTATGTTCTGTCTCATATCGACTACCGACATCCACCCAAACACCAAGCGTGCATGTAGGAGTATTCCAGTTTTCAGAAGCTATCCGAAAACCATTACTTTCCAAAGTAGTCACCTTCGTCTCTGGCATATGAACCGTTCCAAATAAAGGAACATATTTGGTGGCC GAACCAATTTTCCTATGACGTATTGA GGAAGCAAATGGAGCTAGTCTGCGGGAAGCAAATCGAAGTGCCATACCCAGCACGTAACGAA]
[+] EMBL CD141065 [ TCTAAAGACTGCTGACTTCTCTTTTCAGTCCCCTTGAAAGCCATGTGCTCAAGGAAATGAGCAACACCATTATTATGTTCTGTCTCATATCGACTACCGACATCCACCCAAACACCAACCGTGCATGTAGGAGTATTCCAGTTTTCAGAAGCTATCCGAAAACCATTACCTTCCAAAGTAGTCACTTTCGTCTCTGGCATATGAACCGTTTCAAATAAAGGAACATATTTGGTGGCCAGAACCAATCTTCCTATGACGTATTGA GGAAGCAAATGGAG ]
consensusID : consensus_11071#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 592 fasta sequence
[AAAGGTAGGTAAGTATTTTAATAGGACCTGAGTGCAAAACTTGATCCAGAATAGCATAGGTAGCCTGTTGACTAACTTCTAAACTTTGACCAAGTCCTAGACCAATAGATAATTGTTGTAATGCGATTATTTCATTAGGATCTGGTTTCTGACCTGTTTTCCAATGTCGAGCATATTCTGACACTACACGTGGATCGTGTCCCAGTAACATGTTGATATCGTGTACGTGCAAGCATAGAATGTAATGCATGTCCCCATTCATGAAATAAATTTTCAACTTGTCCTATACTGAGCAGTGGTGGTTTAGAATTCGATTCAGGCGGAGATACCGTCAATTGAAGTGTTATAATTGGAGATTGATATGATCGTTTACTAGAACCATTATCTAGGCATCGGCCACCACGTATAGTGTAATGGCAATCTTGGGCAGGTTTACCAGGACGATCAAGCAGATCACAATAGACTATTCCAATTGGTTCTGTCGAATTATTCTTATTCGAATACACATGAACTTTGATAACAGATGGATGCCATACTTCTCCAGGTTGTACTGGTACAACATCTAGACGTAATCCANATAGACAATTAGCCA]
[+] EMBL CD065215 [AAAGGTAGGTAAGTATTTTAATAGGACCTGAGTGCAAAACTTGATCCAGAATAGCATAGGTAGCCTGTTGACTAACTTCTAAACTTTGACCAAGTCCTAGACCAATAGATAATTGTTGTAATGCGATTATTTCATTAGGATCTGGTTTCTGACCTGTTTTCCAATGTCGAGCATATTCTGACACTACACGTGGATCGTGTCCCAGTAACATGTTGATATCGTGTACGTGCAAGCATAGAATGTAATGCATGTCCCCATTCATGAAATAAATTTTCAACTTGTCCTATACTGAGCAGTGGTGGTTTAGAATTCGATTCAGGCGGAGATACCGTCAATTGAAGTGTTATAATTGGAGATTGATATGATCGTTTACTAGAACCATTATCTAGGCATCGGCCACCACGTATAGTGTAATGGCAATCTTGGGCAGGTTTACCAGGACGATCAAGCAGATCACAATAGACTATTCCAATTGGTTCTGTCGAATTATTCTTATTCGAATACACATGAACTTTGATAACAGATGGATGCCATACTTCTCCAGGTTGTACTGGTACAACATCTAGACGTAATCCANATAGACAATTAGCCA]
[+] EMBL CD179829 [ TGATCCAGAATAGCATAGGTAGCCTGTTGACTAACTTCTAAACTTTGACCAAGTCCTAGACCAATAGATAATTGTTGTAATGCGATTATTTCATTAGGATCTGGTTTCTGACCTGTTTTCCAATGTCGAGCATATTCTGACACTACACGTGGATCGTGTCCCAGTAACATGTTGATATCGTGTACGT ]
consensusID : consensus_11071#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 246 fasta sequence
[AACACATTACGACGGGAAATAGAAACAGATATGAAAAGGATGAATAACAACTGGAAAGGATTGCCCAAGACAGGGTTGGATGGAGAATGCTGGTGAGCGGCCTATGCTCCTCGACGAGGGGTAACAGGCGTAGGTAAGTAAGTTACCTAAGGAGAGTATGCATATTTATACATAATATTCATGATTAGTCTATATATTATTCATAAGCAAATCATCTGCATCATTTAAAAACACCTGTTATGAGAG]
[+] EMBL CD066919 [AACACATTACGACGGGAAATAGAAACAGATATGAAAAGGATGAATAACAACTGGAAAGGATTGCCCAAGACAGGGTTGGATGGAGAATGCTGGTGAGCGGCCTATGCTCCTCGACGAGGGGTAACAGGCGTAGGTAAGTAAGTTACCTAAGGAGAGTATGCATATTTATACATAATATTCATGATTAGTCTATATATTATTCATAAGCAAATCATCTGCATCATTTAAAAACACCTGTTATGAGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11071#1 ------------------------------------------------------------
consensus_11071#2 ------------------------------------------------------------
consensus_11071#0 ACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 60
consensus_11071#1 ---------AAAGGTAGGTAAGTATTTTAATAGGACCTGAGTGCAAAACTTGATCCAGAA 51
consensus_11071#2 ------------------------------------------------------------
consensus_11071#0 GGAAGAAATGAATATTGCTACGTAAACACAAGATAATACCGTATAATAGAAATTACAGAA 120
consensus_11071#1 TAGCATAGGTAGCCTGTTGACTAACTTCTAAACTTTGACCAAGTCCTAGACCAATAGATA 111
consensus_11071#2 ------------------------------------------------------------
consensus_11071#0 CTATGTAAGTATAATTGGATTGTAAGCAATAACATCACAACTTGATATTTTAAACACTGA 180
consensus_11071#1 ATTGTTGTAATGCGATTATTTCATTAGGATCTGGTTTCTGACCTGTTTTCCAATGTCGAG 171
consensus_11071#2 ------------------------------------------------------------
consensus_11071#0 TAATTTTTCTATAGAAGAAGCCACCAAGTTTTATCCCGAATACGATTGTAATCAAGCATG 240
consensus_11071#1 CATATTCTGACACTACACGTGGATCGTGTCCCAGTAACATGTTGATATCGTGTACGTGCA 231
consensus_11071#2 ------------------------------------------------------------
consensus_11071#0 GTTTCCACTGGACCGATAGACGCGACAGCAGGGCATTTATCAAAAAAGTACTTCATGCAT 300
consensus_11071#1 AGCATAGAATGTAATGCATGTCCCCATTCATGAAATAAATTTTCAACTTGTCCTATACTG 291
consensus_11071#2 -----------------------------------------------------AACACAT 7
consensus_11071#0 ATTTCCTTAATATGTTCAGCATTGAGCGCGTCAATTCTGGCTAGCAATTCAGTTATAGGT 360
* *
consensus_11071#1 -AGCAGTGGTGGTTTAGAATTCGATTCAGGCGGAGATACCGTCA-ATTGAAGTGTTATAA 349
consensus_11071#2 -TACGACGG-GAAATAGAAACAGATATGAAAAGGATGAATAACA-ACTGGAAAGG-ATTG 63
consensus_11071#0 ATACGACGACCATACACCAACATGTGCCGACCAATCTCTTCACATATAGGCGTGGTACCA 420
* * * * * ** * * * *
consensus_11071#1 TTGGAG-ATTGATATGATCGTTTACTAGAACCATTATCTA-GGCATCGGCCACCACGTAT 407
consensus_11071#2 CCCAAG-ACAGGGTTGGATGG-----AGAATGCTGGTGAGCGGCCTATGCTCCTCGACGA 117
consensus_11071#0 TCTAACTGCAAAAGGAGATGTGTTTTCAATTGGTTCTTTGCTCTGTCGATTTCATGCTGA 480
* * * * * * *
consensus_11071#1 AGTGTAAT-G-GCAATCTTGGGCAGGTTTACCAGGACGATCAA--GCAGATCACAATAGA 463
consensus_11071#2 GGGGTAACAG-GCGTAGGTAAGTAAGTTACCTAAGGAGAGTAT--GCATATTTATACATA 174
consensus_11071#0 GTAACGTGAGTACACATACGGACAAATTCTTTAAGGAATTCTCCAACAGATTCACCCAAA 540
* * * ** * * ** ** * *
consensus_11071#1 CT-ATTCCAATT-GGTTCTGTCGAATTATTCTTATTCGAATACACATGAACTTTGATAAC 521
consensus_11071#2 AT-ATTCATGAT-TAGTCTAT-ATATTATTCATAAGCAAAT---CATCTGCATCATTTAA 228
consensus_11071#0 CCCATTTTTTCTGCGGTTAAGTAAACTCCCCACAAAGAAGTAT-CATGGTAGCAAGTAAA 599
*** * * * * * * * * *** * *
consensus_11071#1 AGATGGATGCCATACTTCTCCAGGTTGTACTGGTACAACATCTAGACGTAATCCANATAG 581
consensus_11071#2 AAACACCTGTTATGAGAG------------------------------------------ 246
consensus_11071#0 GAAATGTTGGAAACTGTGTACCGAATTTTCCATAAAAAACTTGGAGGCCAGTTTACTGGC 659
* ** *
consensus_11071#1 ACAATTAGCCA------------------------------------------------- 592
consensus_11071#2 ------------------------------------------------------------
consensus_11071#0 AACATTAAATCCTCCTCCATAACTTCTATCCCAAGCACCATGCAAACTGCTGGCAACCAT 719
consensus_11071#1 ------------------------------------------------------------
consensus_11071#2 ------------------------------------------------------------
consensus_11071#0 TAGTGCTAATGTGTCTGAACTTTGCCAACCAGGACCCTCGAACGCTATCGCAGCATGAGC 779
consensus_11071#1 ------------------------------------------------------------
consensus_11071#2 ------------------------------------------------------------
consensus_11071#0 TACTGGCATAGCATCATCTCTGTCACGAATTTCAGAGCCTGTAAAACGACAGCGTTGTAG 839
consensus_11071#1 ------------------------------------------------------------
consensus_11071#2 ------------------------------------------------------------
consensus_11071#0 GCTCGGTACCCCTTCACCTTCCTGATAGGATGCCTGGAAATCGCCAAAATGTTTCTCCGC 899
consensus_11071#1 ------------------------------------------------------------
consensus_11071#2 ------------------------------------------------------------
consensus_11071#0 GAGGTCGCATAGATGCTTATGGTCGATTCCTCCTGCAGCACTGAGCACCATTCGTGGTGC 959
consensus_11071#1 ------------------------------------------------------------
consensus_11071#2 ------------------------------------------------------------
consensus_11071#0 TTTATAGTTGTGTTTGATAAAATTCTTCATATCACTGGCTTTCAAAGATTTGACATTTTC 1019
consensus_11071#1 ------------------------------------------------------------
consensus_11071#2 ------------------------------------------------------------
consensus_11071#0 TACAGGTCCAAGAATTGTCCTTCCAAGAGGAGTCCCTTGATAGGCAGTTGCATGCAGGTA 1079
consensus_11071#1 ------------------------------------------------------------
consensus_11071#2 ------------------------------------------------------------
consensus_11071#0 ATCAAAGACGACTTCCTGGTAATTGCTCTCAATTTCCTCCATTTCCCGTAAAATGACCCC 1139
consensus_11071#1 ------------------------------------------------------------
consensus_11071#2 ------------------------------------------------------------
consensus_11071#0 TCTTTCACGTTCAACCTGACTACTCTCAAACTTGCTGTTTTTTAATATATCTGATAGTAA 1199
consensus_11071#1 ------------------------------------------------------------
consensus_11071#2 ------------------------------------------------------------
consensus_11071#0 TTCAACCGCCCAAGGTAGATCCTCAACAAAACACTTCGCATAATACACCGTCATCTCACG 1259
consensus_11071#1 ------------------------------------------------------------
consensus_11071#2 ------------------------------------------------------------
consensus_11071#0 AGATGTGTACGCATTTAGATGAGCACCTTTGTCTTCCACTTCAAGTTCTAAAGACTGCTG 1319
consensus_11071#1 ------------------------------------------------------------
consensus_11071#2 ------------------------------------------------------------
consensus_11071#0 ACTTCTCTTTTCAGTCCCCTTGAAAGCCATGTGCTCAAGGAAATGAGCAACACCATTATT 1379
consensus_11071#1 ------------------------------------------------------------
consensus_11071#2 ------------------------------------------------------------
consensus_11071#0 ATGTTCTGTCTCATATCGACTACCGACATCCACCCAAACACCAACCGTGCATGTAGGAGT 1439
consensus_11071#1 ------------------------------------------------------------
consensus_11071#2 ------------------------------------------------------------
consensus_11071#0 ATTCCAGTTTTCAGAAGCTATCCGAAAACCATTACCTTCCAAAGTAGTCACTTTCGTCTC 1499
consensus_11071#1 ------------------------------------------------------------
consensus_11071#2 ------------------------------------------------------------
consensus_11071#0 TGGCATATGAACCGTTTCAAATAAAGGAACATATTTGGTGGCCGAACCAATCTTCCTATG 1559
consensus_11071#1 ------------------------------------------------------------
consensus_11071#2 ------------------------------------------------------------
consensus_11071#0 ACGTATTGAGGAAGCAAATGGAGCTAGTCTGCGGGAAGCAAATCGAAGTGCCATACCCAG 1619
consensus_11071#1 -----------
consensus_11071#2 -----------
consensus_11071#0 CACGTAACGAA 1630
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||