cluster # 1110

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Schistosoma mansoni
cluster # 1110 cluster # 1110 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1110#0 length = 400 sequences # 1

consensus_1110#1 length = 384 sequences # 1

consensusID : consensus_1110#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 400
fasta sequence

                              [TATCATGAAATGATGCATAGAATGTAGTTATACGATTCTAAATACATCAAAATAGGGTAAACAAAAGACAACTCAGATTTATATACCTGACGAAGTTTTCTTTGTACATAGATAACAACATAGCAGGACAGACCGCCCTTTTTTATCAGATATCGAGCTAATGGATCTCGTTACTTCTCGGACCACATCTAAAGGGCTCAATTTATTGATAAACATAAACCTGATACACCCGTTCTCACTTCCAAATGCAACATAATTCTTGCTTTCAGAGGATAACCTGTTTTTAAAAAAAGTAATCTTCGAAGACTCTCGTGTTTATGCTTTGGAGATAAGTTAGTAAGTAGATGATTTTCGCAACGAACTAAAATCATTTGGTGAAACGTCCGAAACCAATGATCTC]

[+] EMBL CD187987             [TATCATGAAATGATGCATAGAATGTAGTTATACGATTCTAAATACATCAAAATAGGGTAAACAAAAGACAACTCAGATTTATATACCTGACGAAGTTTTCTTTGTACATAGATAACAACATAGCAGGACAGACCGCCCTTTTTTATCAGATATCGAGCTAATGGATCTCGTTACTTCTCGGACCACATCTAAAGGGCTCAATTTATTGATAAACATAAACCTGATACACCCGTTCTCACTTCCAAATGCAACATAATTCTTGCTTTCAGAGGATAACCTGTTTTTAAAAAAAGTAATCTTCGAAGACTCTCGTGTTTATGCTTTGGAGATAAGTTAGTAAGTAGATGATTTTCGCAACGAACTAAAATCATTTGGTGAAACGTCCGAAACCAATGATCTC]




>consensus_1110#0
TATCATGAAATGATGCATAGAATGTAGTTATACGATTCTAAATACATCAAAATAGGGTAA
ACAAAAGACAACTCAGATTTATATACCTGACGAAGTTTTCTTTGTACATAGATAACAACA
TAGCAGGACAGACCGCCCTTTTTTATCAGATATCGAGCTAATGGATCTCGTTACTTCTCG
GACCACATCTAAAGGGCTCAATTTATTGATAAACATAAACCTGATACACCCGTTCTCACT
TCCAAATGCAACATAATTCTTGCTTTCAGAGGATAACCTGTTTTTAAAAAAAGTAATCTT
CGAAGACTCTCGTGTTTATGCTTTGGAGATAAGTTAGTAAGTAGATGATTTTCGCAACGA
ACTAAAATCATTTGGTGAAACGTCCGAAACCAATGATCTC

consensusID : consensus_1110#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 384
fasta sequence

                              [TATTGTAATCGTGTATTTCCTTTAGCTGCTTCAGGTAGCATTTCAGTCTCATCTATTTTATTGCTTTGTTAACTGATTCTCCAGCTACCTATTTATTGTTGAATTGGTGTACGGTCACTCAGAAAAATATTTTCTCAATTTATTGATAAACATAAACCTGATACACCCGTTCTCACTTCCAAATGCAACATAATTCTTGCTTTCAGAGGATAACCTGTTTTTAAAAAAAGTAATCTTCGAAGACTCTCGTGTTTATGCTTTGGAGATAAGTTAGTAAGTAGATGATTTTCGCAACGAACTAAAATCATTTGGTGAAACGTCCGAAACCAATGATCTCCGAATTTCCGTTTGTCATAGTATAGAACTCCTTAACAGTGCCCACTC]

[-] EMBL CD202300             [TATTGTAATCGTGTATTTCCTTTAGCTGCTTCAGGTAGCATTTCAGTCTCATCTATTTTATTGCTTTGTTAACTGATTCTCCAGCTACCTATTTATTGTTGAATTGGTGTACGGTCACTCAGAAAAATATTTTCTCAATTTATTGATAAACATAAACCTGATACACCCGTTCTCACTTCCAAATGCAACATAATTCTTGCTTTCAGAGGATAACCTGTTTTTAAAAAAAGTAATCTTCGAAGACTCTCGTGTTTATGCTTTGGAGATAAGTTAGTAAGTAGATGATTTTCGCAACGAACTAAAATCATTTGGTGAAACGTCCGAAACCAATGATCTCCGAATTTCCGTTTGTCATAGTATAGAACTCCTTAACAGTGCCCACTC]




>consensus_1110#1
TATTGTAATCGTGTATTTCCTTTAGCTGCTTCAGGTAGCATTTCAGTCTCATCTATTTTA
TTGCTTTGTTAACTGATTCTCCAGCTACCTATTTATTGTTGAATTGGTGTACGGTCACTC
AGAAAAATATTTTCTCAATTTATTGATAAACATAAACCTGATACACCCGTTCTCACTTCC
AAATGCAACATAATTCTTGCTTTCAGAGGATAACCTGTTTTTAAAAAAAGTAATCTTCGA
AGACTCTCGTGTTTATGCTTTGGAGATAAGTTAGTAAGTAGATGATTTTCGCAACGAACT
AAAATCATTTGGTGAAACGTCCGAAACCAATGATCTCCGAATTTCCGTTTGTCATAGTAT
AGAACTCCTTAACAGTGCCCACTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1110#0      TATCATGAAATGATGCATAGAATGTAGTTATACGATTCTAAATACATCAAAATAGGGTAA 60
consensus_1110#1      --------------------------------------------TATTGTAATCGTGTAT 16
                                                                   **   *** * *** 

consensus_1110#0      A-CAAAAGACAACTCAGATTTATATACCTGACGAAGTTTTCTTTGTACATAGATAACAAC 119
consensus_1110#1      TTCCTTTAGCTGCTTCAGGTAGCATTTCAGTCTCATCTATTTTATTGCTTTGTTAACTGA 76
                        *      *  **     *   **  * * *  *  * * **  * * * * ****   

consensus_1110#0      ATAGCAGGACAGACCGCCCTTTTTTATCAGATATCGAGCTAATGGATCTCGTTACTTCTC 179
consensus_1110#1      TTCTCCAGCTA-------CCTATTTAT----TGTTGAATTGGTGTAC--GGTCACTC--A 121
                       *  *  *  *       * * *****    * * **  *  ** *    ** ***    

consensus_1110#0      GGACCACATCTAAAGGGCTCAATTTATTGATAAACATAAACCTGATACACCCGTTCTCAC 239
consensus_1110#1      GAAAAATATTTT-----CTCAATTTATTGATAAACATAAACCTGATACACCCGTTCTCAC 176
                      * *  * ** *      *******************************************

consensus_1110#0      TTCCAAATGCAACATAATTCTTGCTTTCAGAGGATAACCTGTTTTTAAAAAAAGTAATCT 299
consensus_1110#1      TTCCAAATGCAACATAATTCTTGCTTTCAGAGGATAACCTGTTTTTAAAAAAAGTAATCT 236
                      ************************************************************

consensus_1110#0      TCGAAGACTCTCGTGTTTATGCTTTGGAGATAAGTTAGTAAGTAGATGATTTTCGCAACG 359
consensus_1110#1      TCGAAGACTCTCGTGTTTATGCTTTGGAGATAAGTTAGTAAGTAGATGATTTTCGCAACG 296
                      ************************************************************

consensus_1110#0      AACTAAAATCATTTGGTGAAACGTCCGAAACCAATGATCTC------------------- 400
consensus_1110#1      AACTAAAATCATTTGGTGAAACGTCCGAAACCAATGATCTCCGAATTTCCGTTTGTCATA 356
                      *****************************************                   

consensus_1110#0      ----------------------------
consensus_1110#1      GTATAGAACTCCTTAACAGTGCCCACTC 384