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Schistosoma mansoni
cluster # 11104 cluster # 11104       Sequences # 33       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11104#0 length = 1250 sequences # 29  
consensus_11104#1 length = 660 sequences # 3  
consensus_11104#2 length = 300 sequences # 1  

consensusID : consensus_11104#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 29
consensus length = 1250
fasta sequence
                              [GCGGTGGAAGTGCGTTATGAGTGACTTCGTGTTCGTCCTTCGGAGGTTGATATCAATTTCGTATTCCAATCGAAAAGGTATAACTATCTAACAGCAAATGCCAAAGAAGAAAGTCAAAGATAAAAAAATCCTGGTCGATCAGTCGGATCCTTTGGAGTTGGCAAGTGTTGTTAGCCTTTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAATTAATCCACACGAAGTTCCTATATGGTTCGAGAGGTTCTTTCCTATTTTAGAGCCTGTCATTCGTGATACCACCAAAAATCCTAAATTCAGAGCGTCTTCAGCCATAGCTC-TTGCAGTACTGCAGTCTTTGTCAGGCTATTGTGACTTTATCTCACCA-TTAGATGTTATANAATCATTTGAATTTGTATACAGAAGCTCCACTTCAAAAATCGAAGCTGATATTTTTGATCTCTATGTTGCAGCACTTAAAGCCTGGACACTAATTTACACTTTTCTATCACCCTACGACTCTGGT-ATGTTGGGAAAGCTGTGCTTCCTGTTTTACTATCTTTACTTCAGTGTTCAAACGTGAATGTTCGTATAATAGCAGGTGAAGCTTCAGCAGTCATTTATGAACGAATTCGAAACGAAGTTGATGATAAATTCAAAGGTCCCTATTACAGCGATCTTGTCCGTTTACTTGGTGAGCTGGCTACAGATAGCTCAAAAAGCCGCTCTAAAAACGATCTCAAGAAGCAACGTCATTCCTTTCGGGAACTTGTGGAGGCCGTAGTGCACAGTGACTACCCTGAAACATCGATAAACTTTGGCGTTGAAGTTTTAACGTTATCATCTTGCACTGGACACTTTTATTATAACTTCTTGTGCTCAGTGCTAGGAAGTGGATTGAGGCATCATCTTCGTGAAAACCCGTACATTCGTAATCTTTTTGATCTCGGCTTACCATCGTTGCTACAGCAGAATAGAGCCAACCACCGGGTCCTCAAAGA]

[+] EMBL CD164048             [GCGGTGGAAGTGCGTTATGAGTGACTTCGTGTTCGTCCTTCGGAGGTTGATATCAATTTCGTATTCCAATCGAAAAGGTATAACTATCTAACAGCAAATGCCAAAGAAGAAAGTCAAAGATAAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD163903             [GCGGTGGAAGTGCGTTATGAGTGACTTCGTGTTCGTCCTTCGGAGGTTGATATCAATTTCGTATTCCAATCGAAAAGGTATAACTATCTAACAGCAAATGCCAAAGAAGAAAGTCAAAGATAAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD163787             [ CGGTGGAAGTGCGTTATGAGTGACTTCGTGTTCGTCCTTCGGAGGTTGATATCAATTTCGTATTCCAATCGAAAAGGTATAACTATCTAACGGCAAATGCCAAAGAAGAAAGTCGAAGATAAAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD186870             [ CGGTGGAAGTGCGTTATGAGTGACTTCGTGTTCGTCCTTCGGAGGTTGATATCAATTTCGTATTCCAATCGAAAAGGTATAACTATCTAACAGCAAATGTCAAAGAAGAAAGTCAAAGATAAAAAAATCCTGGTCGATCAGTCGGATCCTTTGGAGTTGGCAAGTGTTGTTAGCCTTTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AI975882             [               TATGAGTGACTTCGTGTTCGTCCTTCGGAGGTTGATATCAATTTCGTATTCCAATCGAAAAGGTATAACTATCTAACAGCAAATGCCAAAGAAGAAAGTCAAAGATAAAAAAATCCTGGTCGATCAGTCGGATCCTTTGGAGTTGGCAAGTGTTGTTAGCCTTTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD131734             [                         TTCGTGTTCGTCCTTCGGAGGTTGATATCAATTTCGTATTCCAATCGAAAAGGTATAACTATCTAACAGCAAATGCCAAAGAAGAAAGTCAAAGATAAAAAAATCCTGGTCGATCAGTCGGATCCTTTGGAGTTGGCAAGTGTTGTTAGCCTTTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD156601             [                                                  TATCAATTTCGTATTCCAATCGAAAAGGTATAACTATCTAACAGCAAATGTCAAAGAAGAAGGTCAAAGATAAAAAAATCCTGGTCGATCAGTCGGATCCTCTGGAGTTGGCAAGTGTTGTTAGCCTTTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAATTAATCCACACGAAGTTCCTATATGGTTCGAGAGGTTCTTTCCTATTTTAGAGCCTGTCATTCGTGATACCACCAAAAATCCTAAATTCAGAGCGTCTTCAGCCATAGCTC TTGCAGTACTGCAGTCTTTGTCAGGCTATTGTGACTTTATCTCACCA TTAGATGTTATANAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD156751             [                                                  TATCAATTTCGTATTCCAATCGAAAAGGTATAACTATCTAACAGCAAATGTCAAAGAAGAAAGTCAAAGATAAAAAAATCCTGGTCGATCAGTCGGATCCTTTGGAGTTGGCAAGTGTTGTTAGCCTTTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAATTAATCCACACGAAGTTCCTATATGGTTCGAGAGGTTCTTTCCTATTTTAGAGCCTGTCATTCGTGATACCACCAAAAATCCTAAATTCAGAGCGTCTTCAGCCATAGCTC TTGCAGTACTGCAGTCTTTGTCAGGCTATTGTGACTNTATCTCACCA TTAGATGTTATANNAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD156752             [                                                  TATCAATTTCGTATTCCAATCGAAAAGGTATAACTATCTAACAGCAAATGTCAAAGAAGAAAGTCAAAGATAAAAAAATCCTGGTCGATCAGTCGGATCCTTTGGAGTTGGCAAGTGTTGTTAGCCTTTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCCCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAATTAATCCACACGAAGTTCCTATATGGTTCGAGAGGTTCTTTCCTATTTTAGAGCCTGTCATTCGTGATACCACCAAAAATCCTAAATTCAGAGCGTCTTCAGCCATAGCTC TTGCAGTACTGCAGTCTTTGTCAGGCTATTGTGACTNTATCTCACCANTTAGATGTTATA AAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD182923             [                                                         nTCGTATTNCCATCGAAAAGGTATAACTATCTAACAGCAAATGCCAAAGAAGANAGTCAAAGATAAAAAAATCCTGGTCGATCAGTCGGATCCTTTGGAGTTGGCAAGTGTTGTTAGCCTTTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD183051             [                                                                                                                                                GGATCCTTTGGAGTTGGCAAGTGTTGTTAGCCTTTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCCATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD143478             [                                                                                                                                                                                 TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD143485             [                                                                                                                                                                                 TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD143519             [                                                                                                                                                                                 TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGTATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD143520             [                                                                                                                                                                                 TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATTAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD143530             [                                                                                                                                                                                 TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD143549             [                                                                                                                                                                                 TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGGCGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD143570             [                                                                                                                                                                                 TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTCGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD143512             [                                                                                                                                                                                 TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAATACAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTCGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATCTTCAAAAAGAGTAAACCACAAGATCATGCGTTAGCTGCACATTTACTGACCGTATTCTCTCTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD143490             [                                                                                                                                                                                 TTATAGTGACAGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTGTTGATAAAGTTTGCTCACCAATCGATCTAATGGAAGAGAAGATAACGGAAACTCGAATTAACGCAGTACGTTCTTTAATTGAATTTTTTCGTTCACATCATTTCTGTCTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTATCAAAAAGAGTAAACCACAAGATCAGGCATTAACTGCAGATCTACTGACCGTATTCTCTCTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD143429             [                                                                                                                                                                                 TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGAAGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTCTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD143439             [                                                                                                                                                                                 TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD143460             [                                                                                                                                                                                 TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD183021             [                                                                                                                                                                                                      TCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAATTAATCCACACGAAGTTCCTATATGGNTCGAGAGGTNNNCTTCTATNNTAGAGCCTGTCATTCGTGATACac                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD092782             [                                                                                                                                                                                                               TTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAATTAATCCACACGAAGTTCCTATATGGTTCGAGAGGTTCTTTCCTATTTTAGAGCCTGTCATTCGTGATACCACCAAAAATCCTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD157068             [                                                                                                                                                                                                                                   ATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAATTAATCCACACGAAGTTCCTATATGGTTCGAGAGGTTCTTTCCTATTTTAGAGCCTGTCATTCGTGATACCACCAAAAATCCTAAATTCAGAGCGTCTCCAGCCATAGCTCATTGCAATACTGCAGTCTTTGTCAGGCTATTGTGACTTTATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD092069             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GAGCGTCTTCAGCCATAGCTC TTGCAGTACTGCAGTCTTTGTCAGGCTATTGTGACTTTATCTCACCG TTAGATGTTATAAAATCATTTGAATTTGTATACAGAAGCTCCACTTCAAAAATCGAAGCTGATATTTTTGATCTCTATGTTGCAGCACTTAAAGCCTGGACACTAATTTACACTTTTCTATCACCCTACGACTCTGGT ATGTTGGGAAAGCTGTGCTTCCTGTTTTACTATCTTTACTTCAGTGTTCAAACGTGAATGTTCGTATAATAGCAGGTGAAGCTTCAGCAGTCATTTATGAACGAATTCGAAACGAAGTTGATGATAAATTCAAAGGTCCCTATTACAGCGATCTTGTCCGTTTACTTGGTGAGCTGGCTACAGATAGCTCAAAAAGCCGCTCTAAAAACGATCTCAAGAAGCAACGTCATTCCTTTCGGGAACTTGTGGAGGCCGTAGTGCACAGTGACTACCCTGAAACATCGATAAACTTTGGCGTTGGAGTTTTAACGTTATC                                                                                                                                                               ]
[-] EMBL CD135253             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTGATCTCTATGTTGCAGCACTTAAAGCCTGGACACTAATTTACACTTTTCTATCACCCTACGACTCTGGTAATGTTGGGAAAGCTGTGCTTCCTGTTTTACTATCTTTACTTCAGTGTTCAAACGTGAATGTTCGTATAATAGCAGGTGAAGCTTCAGCAGTCATTTTTGAACGAATTCGAAACGAAGTTGATGATAAATTCAAAGGTCCCTATTACAGCGATCTTGTCCGTTTACTTGGTGAGCTGGCTACAGATAGCTCAAAAAGCCGCTCTAAAAACGATCTCAAGAAGCAACGTCATTCCTTTCGGGAACTTGTGGAGGCCGTAGTGCACAGTGACTACCCTGAAACATCGATAAACTTTGGCGTAGAg                                                                                                                                                                             ]
[+] EMBL BG931871             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GTCCCTATTACAGCGATCTTGTCCGTTTACTTGGTGAGCTGGCTACAGATAGCTCAAAAAGCCGCTCTAAAAACGATCTCAAGAAGCAACGTCATTCCTTTCGGGAACTTGTGGAGGCCGTAGTGCACAGTGACTACCCTGAAACATCGATAAACTTTGGCGTTGAAGTTTTAACGTTATCATCTTGCACTGGACACTTTTATTATAACTTCTTGTGCTCAGTGCTAGGAAGTGGATTGAGGCATCATCTTCGTGAAAACCCGTACATTCGTAATCTTTTTGATCTCGGCTTACCATCGTTGCTACAGCAGAATAGAGCCAACCACCGGGTCCTCAAAGA]


>consensus_11104#0 GCGGTGGAAGTGCGTTATGAGTGACTTCGTGTTCGTCCTTCGGAGGTTGATATCAATTTC GTATTCCAATCGAAAAGGTATAACTATCTAACAGCAAATGCCAAAGAAGAAAGTCAAAGA TAAAAAAATCCTGGTCGATCAGTCGGATCCTTTGGAGTTGGCAAGTGTTGTTAGCCTTTA TAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTT GGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGA AACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTT GGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAA GAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAAT TAATCCACACGAAGTTCCTATATGGTTCGAGAGGTTCTTTCCTATTTTAGAGCCTGTCAT TCGTGATACCACCAAAAATCCTAAATTCAGAGCGTCTTCAGCCATAGCTCTTGCAGTACT GCAGTCTTTGTCAGGCTATTGTGACTTTATCTCACCATTAGATGTTATANAATCATTTGA ATTTGTATACAGAAGCTCCACTTCAAAAATCGAAGCTGATATTTTTGATCTCTATGTTGC AGCACTTAAAGCCTGGACACTAATTTACACTTTTCTATCACCCTACGACTCTGGTATGTT GGGAAAGCTGTGCTTCCTGTTTTACTATCTTTACTTCAGTGTTCAAACGTGAATGTTCGT ATAATAGCAGGTGAAGCTTCAGCAGTCATTTATGAACGAATTCGAAACGAAGTTGATGAT AAATTCAAAGGTCCCTATTACAGCGATCTTGTCCGTTTACTTGGTGAGCTGGCTACAGAT AGCTCAAAAAGCCGCTCTAAAAACGATCTCAAGAAGCAACGTCATTCCTTTCGGGAACTT GTGGAGGCCGTAGTGCACAGTGACTACCCTGAAACATCGATAAACTTTGGCGTTGAAGTT TTAACGTTATCATCTTGCACTGGACACTTTTATTATAACTTCTTGTGCTCAGTGCTAGGA AGTGGATTGAGGCATCATCTTCGTGAAAACCCGTACATTCGTAATCTTTTTGATCTCGGC TTACCATCGTTGCTACAGCAGAATAGAGCCAACCACCGGGTCCTCAAAGA



consensusID : consensus_11104#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 660
fasta sequence
                              [CCAGAGCCAANTTTCGGCACGAGGCAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAATTAATCCACACGAAGTTCCTATATGGTTCGAGAGGTTCTTTCCTATTTTAGAGCCTGTCATTCGTGATACCACCAAAAATCCTAAATTCAGAGCGTCTTCAGCCATAGCTCTTGCAGTACTGCAGTCTTTGTCAGGCTATTGTGACTTTATCTCACCATTAGATGTTATAAAATCATTTGAATTTGTATTCAGAAGCTCCACTTCAAAAATCGAAGCTGATATTTTTGATCTCTATGTTGCAGCACTTAAAGCCTGGACACTAATTTACACTTTTCTATCACCCTACGACTCTGGTAATGTTGGGAAAGCTGTGCTTCCTGTTTTACTATCTTTACTTCAGTGTTCAAACGTGAATGTTCGTATAATAGCAGGTGAAGCTTCAGCAGTCATTTATGAACGAATTCGAAACGAAGTTGATGATAAATTCAAAGGTCCCTATTACAGCGATCTTGTCCGTTTACTTGGTGAGCTGGCTACAGATAGCTCAAAAAGCCGCTCTAAAAACGATCTCAAGAAGCAACGTCATTCCTTTCGGGAACTTGTGGAGGCCGTAGTGCACAGTGACTACCCTGGAACATCGATAAAC]

[+] EMBL CD083206             [CCAGAGCCAANTTTCGGCACGAGGCAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAATTAATCCACACGAAGTTCCTATATGGTTCGAGAGGTTCTTTCCTATTTTAGAGCCTGTCATTCGTGATACCACCAAAAATCCTAAATTCAGAGCGTCTTCAGCCATAGCTCTTGCAGTACTGCAGTCTTTGTCAGGCTATTGTGACTTTATCTCACCATTAGATGTTATAAAATCATTTGAATTTGTATTCAGAAGCTCCACTTCAAAAATCGAAGCTGATATTTTTGATCTCTATGTTGCAGCACTTAAAGCCTGGACACTAATTTACACTTTTCTATCACCCTACGACTCTGGTAATGTTGGGAAAGCTGTGCTTCCTGTTTTACTATCTTTACTTCAGTGTTCAAACGTGAATGTTCGTATAATAGCAGGTGAAGCTTCAGCAGTCATTTATGAACGAATTCGAAACGAAGTTGATGATAAATTCAAAGGTCCCTATTACAGCGATCTTGTCCGTTTACTTGGTGAGCTGGCTACAGATAGCTCAAAAAGCCGCTCTAAAAACGATCTCAAGAAGCAACGTCATTCCTTTCGGGAACTTGTGGAGGCCGTAGTGCACAGTGACTACCCTGGAACATCGATAAAC]
[+] EMBL CD180572             [                                                                                                                                                                                                                                ggCACCATTAGATGTTATAAAATCATTTGAATTTGTATTCAGAAGCTCCACTTGAAAAATCGAAGCTGATATTTTTGATCTCTATGTTGCAGCACTTAAAGCCTGG                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD132636             [                                                                                                                                                                                                                                           ATGTTATAAAATCATTTGAATTTGTATTCAGAAGCTCCACTTCAAAAATCGAAGCTGATATTTTTGATCTCTATGTTGCAGCACTTAAAGCCTGGACACTAATTTACACTTTTCTATCACCCTACGACTCTGGTAATGTTGGGAAAGCTGTGCTTCCTGTTTTACTATCTTTACTTCAGTGTTCAAACGTGAATGTTCGTATAATAGCAGGTGAAGCTTCAGCAGTCCTTTATGAACGAATTCGAAACGAAGTTGATGATAAATTCAAAGGTCCCTATTACAGCGATCTTGTCCGTTTACTTGGTGAGCTGGCTACAGATAGCTCAAAAAGCCGCTCTAAAAACGATCTCAAGAAGCAACGTCATTCCTTTCGGGAACTTGTGGAGGCCGTAGTGCACAGTGACTACCCTGAAA           ]


>consensus_11104#1 CCAGAGCCAANTTTCGGCACGAGGCAAGATCAGGCATTAGCTGCAGATTTACTGACCGTA TTCTCTCTACAAATTAATCCACACGAAGTTCCTATATGGTTCGAGAGGTTCTTTCCTATT TTAGAGCCTGTCATTCGTGATACCACCAAAAATCCTAAATTCAGAGCGTCTTCAGCCATA GCTCTTGCAGTACTGCAGTCTTTGTCAGGCTATTGTGACTTTATCTCACCATTAGATGTT ATAAAATCATTTGAATTTGTATTCAGAAGCTCCACTTCAAAAATCGAAGCTGATATTTTT GATCTCTATGTTGCAGCACTTAAAGCCTGGACACTAATTTACACTTTTCTATCACCCTAC GACTCTGGTAATGTTGGGAAAGCTGTGCTTCCTGTTTTACTATCTTTACTTCAGTGTTCA AACGTGAATGTTCGTATAATAGCAGGTGAAGCTTCAGCAGTCATTTATGAACGAATTCGA AACGAAGTTGATGATAAATTCAAAGGTCCCTATTACAGCGATCTTGTCCGTTTACTTGGT GAGCTGGCTACAGATAGCTCAAAAAGCCGCTCTAAAAACGATCTCAAGAAGCAACGTCAT TCCTTTCGGGAACTTGTGGAGGCCGTAGTGCACAGTGACTACCCTGGAACATCGATAAAC



consensusID : consensus_11104#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 300
fasta sequence
                              [TTATAAAGACATGCATCGATACTCCAACAGCTTCATCCGTTGACGTTTAGGATGGATTGACCTTGGAATCGCTTGTTGATAAAATATGCTCAGCAATCGATCTAATGGAATATAAGAGAACGGAAACTCGAATTAACGCATTACTTTCTTTAATTGGGTTTTATCGTTCACATCATTTCTGATTGGATGGCTCTCGGAACTACACTGAAACTCTGATAACCAGTATTGAAGATATTTTCAAAAAGAGTTAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATACTCTCTAC]

[+] EMBL CD143440             [TTATAAAGACATGCATCGATACTCCAACAGCTTCATCCGTTGACGTTTAGGATGGATTGACCTTGGAATCGCTTGTTGATAAAATATGCTCAGCAATCGATCTAATGGAATATAAGAGAACGGAAACTCGAATTAACGCATTACTTTCTTTAATTGGGTTTTATCGTTCACATCATTTCTGATTGGATGGCTCTCGGAACTACACTGAAACTCTGATAACCAGTATTGAAGATATTTTCAAAAAGAGTTAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATACTCTCTAC]


>consensus_11104#2 TTATAAAGACATGCATCGATACTCCAACAGCTTCATCCGTTGACGTTTAGGATGGATTGA CCTTGGAATCGCTTGTTGATAAAATATGCTCAGCAATCGATCTAATGGAATATAAGAGAA CGGAAACTCGAATTAACGCATTACTTTCTTTAATTGGGTTTTATCGTTCACATCATTTCT GATTGGATGGCTCTCGGAACTACACTGAAACTCTGATAACCAGTATTGAAGATATTTTCA AAAAGAGTTAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATACTCTCTAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11104#0      GCGGTGGAAGTGCGTTATGAGTGACTTCGTGTTCGTCCTTCGGAGGTTGATATCAATTTC 60
consensus_11104#1      ------------------------------------------------------------
consensus_11104#2      ------------------------------------------------------------
                                                                                   

consensus_11104#0      GTATTCCAATCGAAAAGGTATAACTATCTAACAGCAAATGCCAAAGAAGAAAGTCAAAGA 120
consensus_11104#1      ------------------------------------------------------------
consensus_11104#2      ------------------------------------------------------------
                                                                                   

consensus_11104#0      TAAAAAAATCCTGGTCGATCAGTCGGATCCTTTGGAGTTGGCAAGTGTTGTTAGCCTTTA 180
consensus_11104#1      ------------------------------------------------------------
consensus_11104#2      ------------------------------------------------------------
                                                                                   

consensus_11104#0      TAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTT 240
consensus_11104#1      ------------------------------------------------------------
consensus_11104#2      ------------------------------------------------------------
                                                                                   

consensus_11104#0      GGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGA 300
consensus_11104#1      ------------------------------------------------------------
consensus_11104#2      ------------------------------------------------------------
                                                                                   

consensus_11104#0      AACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTT 360
consensus_11104#1      ------------------------------------------------------------
consensus_11104#2      ------------------------------------------------------------
                                                                                   

consensus_11104#0      GGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAA 420
consensus_11104#1      ----------------------------------------CCAGAGCCAANTTTCGGCAC 20
consensus_11104#2      ------------------------------------------------------------
                                                                                   

consensus_11104#0      GAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAAT 480
consensus_11104#1      GAG------GCAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAAT 74
consensus_11104#2      ------------------------------------------------------------
                                                                                   

consensus_11104#0      TAATCCACACGAAGTTCCTATATGGTTCGAGAGGTTCTTTCCTATTTTAGAGCCTGTCAT 540
consensus_11104#1      TAATCCACACGAAGTTCCTATATGGTTCGAGAGGTTCTTTCCTATTTTAGAGCCTGTCAT 134
consensus_11104#2      ------------------------------------------------------------
                                                                                   

consensus_11104#0      TCGTGATACCACCAAAAATCCTAAATTCAGAGCGTCTTCAGCCATAGCTCTTGCAGTACT 600
consensus_11104#1      TCGTGATACCACCAAAAATCCTAAATTCAGAGCGTCTTCAGCCATAGCTCTTGCAGTACT 194
consensus_11104#2      ------------------------------------------------------------
                                                                                   

consensus_11104#0      GCAGTCTTTGTCAGGCTATTGTGACTTTATCTCACCATTAGATGTTATANAATCATTTGA 660
consensus_11104#1      GCAGTCTTTGTCAGGCTATTGTGACTTTATCTCACCATTAGATGTTATAAAATCATTTGA 254
consensus_11104#2      --------------------------------------------TTATAAAGACAT--GC 14
                                                                   ***** *  ***  * 

consensus_11104#0      ATTTGTA-TACAGAAGCTCCACT--TCAAAAATCGAAGCTGAT--ATTTTTGATCTCTAT 715
consensus_11104#1      ATTTGTA-TTCAGAAGCTCCACT--TCAAAAATCGAAGCTGAT--ATTTTTGATCTCTAT 309
consensus_11104#2      ATCGATACTCCAACAGCTTCATCCGTTGACGTTTAGGATGGATTGACCTTGGAATCGCTT 74
                       **   ** * **  **** **    *  *   *       ***  *  ** **      *

consensus_11104#0      GTTGCAGCACTTAAAGCCTGGACACTAATTTACACTTTTCTATCACCCTACGACTCTGGT 775
consensus_11104#1      GTTGCAGCACTTAAAGCCTGGACACTAATTTACACTTTTCTATCACCCTACGACTCTGGT 369
consensus_11104#2      GTTGATAAAAT--ATGCTCAGCAATCGATCTAATGGAATATAAGAGAACG-GAAACTCGA 131
                       ****    * *  * **   *  *   ** **      * **  *      **  ** * 

consensus_11104#0      A-TGTTGGGAAAGCTGTGCTTCCTGTTTTACTATCTTTACTTCAGTGTTCAAACGTGAAT 834
consensus_11104#1      AATGTTGGGAAAGCTGTGCTTCCTGTTTTACTATCTTTACTTCAGTGTTCAAACGTGAAT 429
consensus_11104#2      ATTAACGCATTACTTTCTTTAATTGGGTTTTATCGTTCACATCAT--TTCTGATTGGATG 189
                       * *   *    *  *    *   **  **      ** ** ***   ***  *   **  

consensus_11104#0      GTTCGTATAATAGCAGGTGAAGCTTCAGCAGTCATTTATGAACGAATTCG-AAACGAAGT 893
consensus_11104#1      GTTCGTATAATAGCAGGTGAAGCTTCAGCAGTCATTTATGAACGAATTCG-AAACGAAGT 488
consensus_11104#2      GCTCTCGGAACTACAC-TGAAACTCTGATAACCAGTATTGAAGATATTTTCAAAAAGAGT 248
                       * **    **   **  **** **     *  ** *  ****   ***   ***   ***

consensus_11104#0      TGATGATAAATTCAAAGGTCCCTATTACAGCGATCTTGTCCGTTTACTTGGTGAGCTGGC 953
consensus_11104#1      TGATGATAAATTCAAAGGTCCCTATTACAGCGATCTTGTCCGTTTACTTGGTGAGCTGGC 548
consensus_11104#2      TAACCACAAGATCA--GGCATTAGCTGCAGATTTACTGACCGTATACTCTCTAC------ 300
                       * *  * **  ***  **       * ***   *  ** **** ****   *        

consensus_11104#0      TACAGATAGCTCAAAAAGCCGCTCTAAAAACGATCTCAAGAAGCAACGTCATTCCTTTCG 1013
consensus_11104#1      TACAGATAGCTCAAAAAGCCGCTCTAAAAACGATCTCAAGAAGCAACGTCATTCCTTTCG 608
consensus_11104#2      ------------------------------------------------------------
                                                                                   

consensus_11104#0      GGAACTTGTGGAGGCCGTAGTGCACAGTGACTACCCTGAAACATCGATAAACTTTGGCGT 1073
consensus_11104#1      GGAACTTGTGGAGGCCGTAGTGCACAGTGACTACCCTGGAACATCGATAAAC-------- 660
consensus_11104#2      ------------------------------------------------------------
                                                                                   

consensus_11104#0      TGAAGTTTTAACGTTATCATCTTGCACTGGACACTTTTATTATAACTTCTTGTGCTCAGT 1133
consensus_11104#1      ------------------------------------------------------------
consensus_11104#2      ------------------------------------------------------------
                                                                                   

consensus_11104#0      GCTAGGAAGTGGATTGAGGCATCATCTTCGTGAAAACCCGTACATTCGTAATCTTTTTGA 1193
consensus_11104#1      ------------------------------------------------------------
consensus_11104#2      ------------------------------------------------------------
                                                                                   

consensus_11104#0      TCTCGGCTTACCATCGTTGCTACAGCAGAATAGAGCCAACCACCGGGTCCTCAAAGA 1250
consensus_11104#1      ---------------------------------------------------------
consensus_11104#2      ---------------------------------------------------------
                                                                                




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)