These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11104#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 29 consensus length = 1250 fasta sequence [GCGGTGGAAGTGCGTTATGAGTGACTTCGTGTTCGTCCTTCGGAGGTTGATATCAATTTCGTATTCCAATCGAAAAGGTATAACTATCTAACAGCAAATGCCAAAGAAGAAAGTCAAAGATAAAAAAATCCTGGTCGATCAGTCGGATCCTTTGGAGTTGGCAAGTGTTGTTAGCCTTTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAATTAATCCACACGAAGTTCCTATATGGTTCGAGAGGTTCTTTCCTATTTTAGAGCCTGTCATTCGTGATACCACCAAAAATCCTAAATTCAGAGCGTCTTCAGCCATAGCTC-TTGCAGTACTGCAGTCTTTGTCAGGCTATTGTGACTTTATCTCACCA-TTAGATGTTATANAATCATTTGAATTTGTATACAGAAGCTCCACTTCAAAAATCGAAGCTGATATTTTTGATCTCTATGTTGCAGCACTTAAAGCCTGGACACTAATTTACACTTTTCTATCACCCTACGACTCTGGT-ATGTTGGGAAAGCTGTGCTTCCTGTTTTACTATCTTTACTTCAGTGTTCAAACGTGAATGTTCGTATAATAGCAGGTGAAGCTTCAGCAGTCATTTATGAACGAATTCGAAACGAAGTTGATGATAAATTCAAAGGTCCCTATTACAGCGATCTTGTCCGTTTACTTGGTGAGCTGGCTACAGATAGCTCAAAAAGCCGCTCTAAAAACGATCTCAAGAAGCAACGTCATTCCTTTCGGGAACTTGTGGAGGCCGTAGTGCACAGTGACTACCCTGAAACATCGATAAACTTTGGCGTTGAAGTTTTAACGTTATCATCTTGCACTGGACACTTTTATTATAACTTCTTGTGCTCAGTGCTAGGAAGTGGATTGAGGCATCATCTTCGTGAAAACCCGTACATTCGTAATCTTTTTGATCTCGGCTTACCATCGTTGCTACAGCAGAATAGAGCCAACCACCGGGTCCTCAAAGA] [+] EMBL CD164048 [GCGGTGGAAGTGCGTTATGAGTGACTTCGTGTTCGTCCTTCGGAGGTTGATATCAATTTCGTATTCCAATCGAAAAGGTATAACTATCTAACAGCAAATGCCAAAGAAGAAAGTCAAAGATAAAAAA ] [+] EMBL CD163903 [GCGGTGGAAGTGCGTTATGAGTGACTTCGTGTTCGTCCTTCGGAGGTTGATATCAATTTCGTATTCCAATCGAAAAGGTATAACTATCTAACAGCAAATGCCAAAGAAGAAAGTCAAAGATAAAAAA ] [-] EMBL CD163787 [ CGGTGGAAGTGCGTTATGAGTGACTTCGTGTTCGTCCTTCGGAGGTTGATATCAATTTCGTATTCCAATCGAAAAGGTATAACTATCTAACGGCAAATGCCAAAGAAGAAAGTCGAAGATAAAAAAA ] [+] EMBL CD186870 [ CGGTGGAAGTGCGTTATGAGTGACTTCGTGTTCGTCCTTCGGAGGTTGATATCAATTTCGTATTCCAATCGAAAAGGTATAACTATCTAACAGCAAATGTCAAAGAAGAAAGTCAAAGATAAAAAAATCCTGGTCGATCAGTCGGATCCTTTGGAGTTGGCAAGTGTTGTTAGCCTTTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAA ] [+] EMBL AI975882 [ TATGAGTGACTTCGTGTTCGTCCTTCGGAGGTTGATATCAATTTCGTATTCCAATCGAAAAGGTATAACTATCTAACAGCAAATGCCAAAGAAGAAAGTCAAAGATAAAAAAATCCTGGTCGATCAGTCGGATCCTTTGGAGTTGGCAAGTGTTGTTAGCCTTTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGA ] [+] EMBL CD131734 [ TTCGTGTTCGTCCTTCGGAGGTTGATATCAATTTCGTATTCCAATCGAAAAGGTATAACTATCTAACAGCAAATGCCAAAGAAGAAAGTCAAAGATAAAAAAATCCTGGTCGATCAGTCGGATCCTTTGGAGTTGGCAAGTGTTGTTAGCCTTTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAA ] [+] EMBL CD156601 [ TATCAATTTCGTATTCCAATCGAAAAGGTATAACTATCTAACAGCAAATGTCAAAGAAGAAGGTCAAAGATAAAAAAATCCTGGTCGATCAGTCGGATCCTCTGGAGTTGGCAAGTGTTGTTAGCCTTTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAATTAATCCACACGAAGTTCCTATATGGTTCGAGAGGTTCTTTCCTATTTTAGAGCCTGTCATTCGTGATACCACCAAAAATCCTAAATTCAGAGCGTCTTCAGCCATAGCTC TTGCAGTACTGCAGTCTTTGTCAGGCTATTGTGACTTTATCTCACCA TTAGATGTTATANAAT ] [+] EMBL CD156751 [ TATCAATTTCGTATTCCAATCGAAAAGGTATAACTATCTAACAGCAAATGTCAAAGAAGAAAGTCAAAGATAAAAAAATCCTGGTCGATCAGTCGGATCCTTTGGAGTTGGCAAGTGTTGTTAGCCTTTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAATTAATCCACACGAAGTTCCTATATGGTTCGAGAGGTTCTTTCCTATTTTAGAGCCTGTCATTCGTGATACCACCAAAAATCCTAAATTCAGAGCGTCTTCAGCCATAGCTC TTGCAGTACTGCAGTCTTTGTCAGGCTATTGTGACTNTATCTCACCA TTAGATGTTATANNAT ] [+] EMBL CD156752 [ TATCAATTTCGTATTCCAATCGAAAAGGTATAACTATCTAACAGCAAATGTCAAAGAAGAAAGTCAAAGATAAAAAAATCCTGGTCGATCAGTCGGATCCTTTGGAGTTGGCAAGTGTTGTTAGCCTTTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCCCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAATTAATCCACACGAAGTTCCTATATGGTTCGAGAGGTTCTTTCCTATTTTAGAGCCTGTCATTCGTGATACCACCAAAAATCCTAAATTCAGAGCGTCTTCAGCCATAGCTC TTGCAGTACTGCAGTCTTTGTCAGGCTATTGTGACTNTATCTCACCANTTAGATGTTATA AAT ] [-] EMBL CD182923 [ nTCGTATTNCCATCGAAAAGGTATAACTATCTAACAGCAAATGCCAAAGAAGANAGTCAAAGATAAAAAAATCCTGGTCGATCAGTCGGATCCTTTGGAGTTGGCAAGTGTTGTTAGCCTTTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGA ] [-] EMBL CD183051 [ GGATCCTTTGGAGTTGGCAAGTGTTGTTAGCCTTTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCCATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGA ] [+] EMBL CD143478 [ TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTAC ] [+] EMBL CD143485 [ TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTAC ] [+] EMBL CD143519 [ TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGTATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTAC ] [+] EMBL CD143520 [ TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATTAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTAC ] [+] EMBL CD143530 [ TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTAC ] [+] EMBL CD143549 [ TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGGCGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTAC ] [+] EMBL CD143570 [ TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTCGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTAC ] [+] EMBL CD143512 [ TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAATACAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTCGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATCTTCAAAAAGAGTAAACCACAAGATCATGCGTTAGCTGCACATTTACTGACCGTATTCTCTCTAC ] [+] EMBL CD143490 [ TTATAGTGACAGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTGTTGATAAAGTTTGCTCACCAATCGATCTAATGGAAGAGAAGATAACGGAAACTCGAATTAACGCAGTACGTTCTTTAATTGAATTTTTTCGTTCACATCATTTCTGTCTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTATCAAAAAGAGTAAACCACAAGATCAGGCATTAACTGCAGATCTACTGACCGTATTCTCTCTAC ] [+] EMBL CD143429 [ TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGAAGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTCTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTAC ] [+] EMBL CD143439 [ TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTAC ] [+] EMBL CD143460 [ TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTAC ] [+] EMBL CD183021 [ TCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAATTAATCCACACGAAGTTCCTATATGGNTCGAGAGGTNNNCTTCTATNNTAGAGCCTGTCATTCGTGATACac ] [+] EMBL CD092782 [ TTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAATTAATCCACACGAAGTTCCTATATGGTTCGAGAGGTTCTTTCCTATTTTAGAGCCTGTCATTCGTGATACCACCAAAAATCCTA ] [-] EMBL CD157068 [ ATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAATTAATCCACACGAAGTTCCTATATGGTTCGAGAGGTTCTTTCCTATTTTAGAGCCTGTCATTCGTGATACCACCAAAAATCCTAAATTCAGAGCGTCTCCAGCCATAGCTCATTGCAATACTGCAGTCTTTGTCAGGCTATTGTGACTTTATC ] [+] EMBL CD092069 [ GAGCGTCTTCAGCCATAGCTC TTGCAGTACTGCAGTCTTTGTCAGGCTATTGTGACTTTATCTCACCG TTAGATGTTATAAAATCATTTGAATTTGTATACAGAAGCTCCACTTCAAAAATCGAAGCTGATATTTTTGATCTCTATGTTGCAGCACTTAAAGCCTGGACACTAATTTACACTTTTCTATCACCCTACGACTCTGGT ATGTTGGGAAAGCTGTGCTTCCTGTTTTACTATCTTTACTTCAGTGTTCAAACGTGAATGTTCGTATAATAGCAGGTGAAGCTTCAGCAGTCATTTATGAACGAATTCGAAACGAAGTTGATGATAAATTCAAAGGTCCCTATTACAGCGATCTTGTCCGTTTACTTGGTGAGCTGGCTACAGATAGCTCAAAAAGCCGCTCTAAAAACGATCTCAAGAAGCAACGTCATTCCTTTCGGGAACTTGTGGAGGCCGTAGTGCACAGTGACTACCCTGAAACATCGATAAACTTTGGCGTTGGAGTTTTAACGTTATC ] [-] EMBL CD135253 [ TTGATCTCTATGTTGCAGCACTTAAAGCCTGGACACTAATTTACACTTTTCTATCACCCTACGACTCTGGTAATGTTGGGAAAGCTGTGCTTCCTGTTTTACTATCTTTACTTCAGTGTTCAAACGTGAATGTTCGTATAATAGCAGGTGAAGCTTCAGCAGTCATTTTTGAACGAATTCGAAACGAAGTTGATGATAAATTCAAAGGTCCCTATTACAGCGATCTTGTCCGTTTACTTGGTGAGCTGGCTACAGATAGCTCAAAAAGCCGCTCTAAAAACGATCTCAAGAAGCAACGTCATTCCTTTCGGGAACTTGTGGAGGCCGTAGTGCACAGTGACTACCCTGAAACATCGATAAACTTTGGCGTAGAg ] [+] EMBL BG931871 [ GTCCCTATTACAGCGATCTTGTCCGTTTACTTGGTGAGCTGGCTACAGATAGCTCAAAAAGCCGCTCTAAAAACGATCTCAAGAAGCAACGTCATTCCTTTCGGGAACTTGTGGAGGCCGTAGTGCACAGTGACTACCCTGAAACATCGATAAACTTTGGCGTTGAAGTTTTAACGTTATCATCTTGCACTGGACACTTTTATTATAACTTCTTGTGCTCAGTGCTAGGAAGTGGATTGAGGCATCATCTTCGTGAAAACCCGTACATTCGTAATCTTTTTGATCTCGGCTTACCATCGTTGCTACAGCAGAATAGAGCCAACCACCGGGTCCTCAAAGA] consensusID : consensus_11104#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 660 fasta sequence [CCAGAGCCAANTTTCGGCACGAGGCAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAATTAATCCACACGAAGTTCCTATATGGTTCGAGAGGTTCTTTCCTATTTTAGAGCCTGTCATTCGTGATACCACCAAAAATCCTAAATTCAGAGCGTCTTCAGCCATAGCTCTTGCAGTACTGCAGTCTTTGTCAGGCTATTGTGACTTTATCTCACCATTAGATGTTATAAAATCATTTGAATTTGTATTCAGAAGCTCCACTTCAAAAATCGAAGCTGATATTTTTGATCTCTATGTTGCAGCACTTAAAGCCTGGACACTAATTTACACTTTTCTATCACCCTACGACTCTGGTAATGTTGGGAAAGCTGTGCTTCCTGTTTTACTATCTTTACTTCAGTGTTCAAACGTGAATGTTCGTATAATAGCAGGTGAAGCTTCAGCAGTCATTTATGAACGAATTCGAAACGAAGTTGATGATAAATTCAAAGGTCCCTATTACAGCGATCTTGTCCGTTTACTTGGTGAGCTGGCTACAGATAGCTCAAAAAGCCGCTCTAAAAACGATCTCAAGAAGCAACGTCATTCCTTTCGGGAACTTGTGGAGGCCGTAGTGCACAGTGACTACCCTGGAACATCGATAAAC] [+] EMBL CD083206 [CCAGAGCCAANTTTCGGCACGAGGCAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAATTAATCCACACGAAGTTCCTATATGGTTCGAGAGGTTCTTTCCTATTTTAGAGCCTGTCATTCGTGATACCACCAAAAATCCTAAATTCAGAGCGTCTTCAGCCATAGCTCTTGCAGTACTGCAGTCTTTGTCAGGCTATTGTGACTTTATCTCACCATTAGATGTTATAAAATCATTTGAATTTGTATTCAGAAGCTCCACTTCAAAAATCGAAGCTGATATTTTTGATCTCTATGTTGCAGCACTTAAAGCCTGGACACTAATTTACACTTTTCTATCACCCTACGACTCTGGTAATGTTGGGAAAGCTGTGCTTCCTGTTTTACTATCTTTACTTCAGTGTTCAAACGTGAATGTTCGTATAATAGCAGGTGAAGCTTCAGCAGTCATTTATGAACGAATTCGAAACGAAGTTGATGATAAATTCAAAGGTCCCTATTACAGCGATCTTGTCCGTTTACTTGGTGAGCTGGCTACAGATAGCTCAAAAAGCCGCTCTAAAAACGATCTCAAGAAGCAACGTCATTCCTTTCGGGAACTTGTGGAGGCCGTAGTGCACAGTGACTACCCTGGAACATCGATAAAC] [+] EMBL CD180572 [ ggCACCATTAGATGTTATAAAATCATTTGAATTTGTATTCAGAAGCTCCACTTGAAAAATCGAAGCTGATATTTTTGATCTCTATGTTGCAGCACTTAAAGCCTGG ] [+] EMBL CD132636 [ ATGTTATAAAATCATTTGAATTTGTATTCAGAAGCTCCACTTCAAAAATCGAAGCTGATATTTTTGATCTCTATGTTGCAGCACTTAAAGCCTGGACACTAATTTACACTTTTCTATCACCCTACGACTCTGGTAATGTTGGGAAAGCTGTGCTTCCTGTTTTACTATCTTTACTTCAGTGTTCAAACGTGAATGTTCGTATAATAGCAGGTGAAGCTTCAGCAGTCCTTTATGAACGAATTCGAAACGAAGTTGATGATAAATTCAAAGGTCCCTATTACAGCGATCTTGTCCGTTTACTTGGTGAGCTGGCTACAGATAGCTCAAAAAGCCGCTCTAAAAACGATCTCAAGAAGCAACGTCATTCCTTTCGGGAACTTGTGGAGGCCGTAGTGCACAGTGACTACCCTGAAA ] consensusID : consensus_11104#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 300 fasta sequence [TTATAAAGACATGCATCGATACTCCAACAGCTTCATCCGTTGACGTTTAGGATGGATTGACCTTGGAATCGCTTGTTGATAAAATATGCTCAGCAATCGATCTAATGGAATATAAGAGAACGGAAACTCGAATTAACGCATTACTTTCTTTAATTGGGTTTTATCGTTCACATCATTTCTGATTGGATGGCTCTCGGAACTACACTGAAACTCTGATAACCAGTATTGAAGATATTTTCAAAAAGAGTTAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATACTCTCTAC] [+] EMBL CD143440 [TTATAAAGACATGCATCGATACTCCAACAGCTTCATCCGTTGACGTTTAGGATGGATTGACCTTGGAATCGCTTGTTGATAAAATATGCTCAGCAATCGATCTAATGGAATATAAGAGAACGGAAACTCGAATTAACGCATTACTTTCTTTAATTGGGTTTTATCGTTCACATCATTTCTGATTGGATGGCTCTCGGAACTACACTGAAACTCTGATAACCAGTATTGAAGATATTTTCAAAAAGAGTTAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATACTCTCTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11104#0 GCGGTGGAAGTGCGTTATGAGTGACTTCGTGTTCGTCCTTCGGAGGTTGATATCAATTTC 60 consensus_11104#1 ------------------------------------------------------------ consensus_11104#2 ------------------------------------------------------------ consensus_11104#0 GTATTCCAATCGAAAAGGTATAACTATCTAACAGCAAATGCCAAAGAAGAAAGTCAAAGA 120 consensus_11104#1 ------------------------------------------------------------ consensus_11104#2 ------------------------------------------------------------ consensus_11104#0 TAAAAAAATCCTGGTCGATCAGTCGGATCCTTTGGAGTTGGCAAGTGTTGTTAGCCTTTA 180 consensus_11104#1 ------------------------------------------------------------ consensus_11104#2 ------------------------------------------------------------ consensus_11104#0 TAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTT 240 consensus_11104#1 ------------------------------------------------------------ consensus_11104#2 ------------------------------------------------------------ consensus_11104#0 GGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGA 300 consensus_11104#1 ------------------------------------------------------------ consensus_11104#2 ------------------------------------------------------------ consensus_11104#0 AACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTT 360 consensus_11104#1 ------------------------------------------------------------ consensus_11104#2 ------------------------------------------------------------ consensus_11104#0 GGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAA 420 consensus_11104#1 ----------------------------------------CCAGAGCCAANTTTCGGCAC 20 consensus_11104#2 ------------------------------------------------------------ consensus_11104#0 GAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAAT 480 consensus_11104#1 GAG------GCAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAAT 74 consensus_11104#2 ------------------------------------------------------------ consensus_11104#0 TAATCCACACGAAGTTCCTATATGGTTCGAGAGGTTCTTTCCTATTTTAGAGCCTGTCAT 540 consensus_11104#1 TAATCCACACGAAGTTCCTATATGGTTCGAGAGGTTCTTTCCTATTTTAGAGCCTGTCAT 134 consensus_11104#2 ------------------------------------------------------------ consensus_11104#0 TCGTGATACCACCAAAAATCCTAAATTCAGAGCGTCTTCAGCCATAGCTCTTGCAGTACT 600 consensus_11104#1 TCGTGATACCACCAAAAATCCTAAATTCAGAGCGTCTTCAGCCATAGCTCTTGCAGTACT 194 consensus_11104#2 ------------------------------------------------------------ consensus_11104#0 GCAGTCTTTGTCAGGCTATTGTGACTTTATCTCACCATTAGATGTTATANAATCATTTGA 660 consensus_11104#1 GCAGTCTTTGTCAGGCTATTGTGACTTTATCTCACCATTAGATGTTATAAAATCATTTGA 254 consensus_11104#2 --------------------------------------------TTATAAAGACAT--GC 14 ***** * *** * consensus_11104#0 ATTTGTA-TACAGAAGCTCCACT--TCAAAAATCGAAGCTGAT--ATTTTTGATCTCTAT 715 consensus_11104#1 ATTTGTA-TTCAGAAGCTCCACT--TCAAAAATCGAAGCTGAT--ATTTTTGATCTCTAT 309 consensus_11104#2 ATCGATACTCCAACAGCTTCATCCGTTGACGTTTAGGATGGATTGACCTTGGAATCGCTT 74 ** ** * ** **** ** * * * *** * ** ** * consensus_11104#0 GTTGCAGCACTTAAAGCCTGGACACTAATTTACACTTTTCTATCACCCTACGACTCTGGT 775 consensus_11104#1 GTTGCAGCACTTAAAGCCTGGACACTAATTTACACTTTTCTATCACCCTACGACTCTGGT 369 consensus_11104#2 GTTGATAAAAT--ATGCTCAGCAATCGATCTAATGGAATATAAGAGAACG-GAAACTCGA 131 **** * * * ** * * ** ** * ** * ** ** * consensus_11104#0 A-TGTTGGGAAAGCTGTGCTTCCTGTTTTACTATCTTTACTTCAGTGTTCAAACGTGAAT 834 consensus_11104#1 AATGTTGGGAAAGCTGTGCTTCCTGTTTTACTATCTTTACTTCAGTGTTCAAACGTGAAT 429 consensus_11104#2 ATTAACGCATTACTTTCTTTAATTGGGTTTTATCGTTCACATCAT--TTCTGATTGGATG 189 * * * * * * ** ** ** ** *** *** * ** consensus_11104#0 GTTCGTATAATAGCAGGTGAAGCTTCAGCAGTCATTTATGAACGAATTCG-AAACGAAGT 893 consensus_11104#1 GTTCGTATAATAGCAGGTGAAGCTTCAGCAGTCATTTATGAACGAATTCG-AAACGAAGT 488 consensus_11104#2 GCTCTCGGAACTACAC-TGAAACTCTGATAACCAGTATTGAAGATATTTTCAAAAAGAGT 248 * ** ** ** **** ** * ** * **** *** *** *** consensus_11104#0 TGATGATAAATTCAAAGGTCCCTATTACAGCGATCTTGTCCGTTTACTTGGTGAGCTGGC 953 consensus_11104#1 TGATGATAAATTCAAAGGTCCCTATTACAGCGATCTTGTCCGTTTACTTGGTGAGCTGGC 548 consensus_11104#2 TAACCACAAGATCA--GGCATTAGCTGCAGATTTACTGACCGTATACTCTCTAC------ 300 * * * ** *** ** * *** * ** **** **** * consensus_11104#0 TACAGATAGCTCAAAAAGCCGCTCTAAAAACGATCTCAAGAAGCAACGTCATTCCTTTCG 1013 consensus_11104#1 TACAGATAGCTCAAAAAGCCGCTCTAAAAACGATCTCAAGAAGCAACGTCATTCCTTTCG 608 consensus_11104#2 ------------------------------------------------------------ consensus_11104#0 GGAACTTGTGGAGGCCGTAGTGCACAGTGACTACCCTGAAACATCGATAAACTTTGGCGT 1073 consensus_11104#1 GGAACTTGTGGAGGCCGTAGTGCACAGTGACTACCCTGGAACATCGATAAAC-------- 660 consensus_11104#2 ------------------------------------------------------------ consensus_11104#0 TGAAGTTTTAACGTTATCATCTTGCACTGGACACTTTTATTATAACTTCTTGTGCTCAGT 1133 consensus_11104#1 ------------------------------------------------------------ consensus_11104#2 ------------------------------------------------------------ consensus_11104#0 GCTAGGAAGTGGATTGAGGCATCATCTTCGTGAAAACCCGTACATTCGTAATCTTTTTGA 1193 consensus_11104#1 ------------------------------------------------------------ consensus_11104#2 ------------------------------------------------------------ consensus_11104#0 TCTCGGCTTACCATCGTTGCTACAGCAGAATAGAGCCAACCACCGGGTCCTCAAAGA 1250 consensus_11104#1 --------------------------------------------------------- consensus_11104#2 --------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||