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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11105#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 1017 fasta sequence
[CGTGGCAGTGATATAGTGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAATAGCTCCCAACGGTATCGGGTTGTTGGTGGATCATATGGGTCGTTGCACGGGGGAAGCGTATGTCCAATTCACATCTTCTGAAAGTCTAGCTCGGGCAAAGGAGAAACATATGGAGAAGATAGGGCACAGATACATTGAAATATTTGAAAATACAATGATGGAGGCCAACATGACCATACAGCGCCAAATGGAAATAAATCAAAGCCGTAGTTCGGGT-CGAGGACCAATGTTTGGTCGAGGCAGTCGTGATGGTCATCCTGATGGTGCGGGGCATCATGGAGGTCCCCGTGGAGGATATGATGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTG-AAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAGGGAATTTCTCCTTCATCTCGCATAAACAACAGCGCACCAGTTTCTAGTCGTCGATCTCCTCCTGTCCACAATAGTAGAGGCCATCAAGGATCACAATACGCTAACTTTGCTCCTCAACAATATGAATATGATGATCCCATATATGCGGAAGATGTAGGTTGCAATTCAGGTTCAAGTAGACCAGATTTTAATCAATCATAT]
[+] EMBL CD197628 [CGTGGCAGTGATATAGTGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAATAGCTCCCAACGGTATCGGGTTGTTGGTGGATCATATGGGTCGTTGCACGGGGGAAGCGTATGTCCAATTCACATCTTCTGAAAGTCTAGCTCGGGCAAAGGAGAAACATATGGAGAAGATAGGGCACAGATACATTGAAATATTTGAAAGTACAATGATGGAGGTCAACATGACCATACAGCGCCAAATGGAAATAAATCAAAGCCGTAGTTCGGGT CGAGGACCAATGTTTGGTCGAGGCAGTCGTGATGGTCATCCTGATGGTGCGGGGCATCATGGAGGTCCCCGTGGAGGATATGATGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCCCCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAG ]
[-] EMBL CD197830 [ ATGGGTCGTTGCACGGGGGAAGCGTATGTCCAATTCACATCTTCTGAAAGTCTAGCTCGGGCAAAGGAGAAACATATGGAGAAGATAGGGCACAGATACATTGAAATATTTGAAAGTACAATGATGGAGGCCAACATGACCATACAGCGCCAAATGGAAATAAATCAAAGCCGTAGTTCGGGT CGAGGACCAATGTTTGGTCGAGGCAGTCGTGATGGTCATCCTGATGGTGCGGGGCATCATGGAGGTCCCCGTGGAGGATATGATGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTA ]
[+] EMBL CD156724 [ GTATGTCCAATTCACATCTTCTGAAAGTCTAGCTCGGGCAAAGGAGAAACATATGGAGAAGATAGGGCACAGATACATTGAAATATTTGAAAGTACAATGATGGAGGCCAACATGACCATACAGCGCCAAATGGAAATAAATCAAAGCCGTAGTTCGGGT CGAGGACCAATGTTTGGTCGAGGTAGTCGTGATGGTCATCCTGATGGTGCGGGGCATCATGGAGGTCCCCGTGGAGGATATGATGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTTCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGG ]
[+] EMBL CD143337 [ GAAGATAGGGCACAGATACATTGAAATATTTGAAAATACAATGATGGAGGCCAACATGACCATACAGCGCCAAATGGAAATAAATCAAAGCCGTAGTTCGGGT CGAGGACCAATGTTTGGTCGAGGCAGTCGTGATGGTCATCCTGATGGTGCGGGGCATCATGGAGGTCCCCGTGGAGGATATGATGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCATCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGGAGCAATGAAGAAAGATCGTG AAAAAATTGGACCTCNGTACATCGAACTTTTNCTAGCATCCACCCCTAAGGGAATTTCTNCTTCATCTCGCATAAAC ACAGCGCACCAGTTTCTA ]
[+] EMBL CD143417 [ GAAGATAGGGCACAGATTCATTGAAATATTTGAAAATACAATGATGGAGGCCAACATGACCATACAGCGCCAAATGGAAATAAATCAAAGCCGTAGTTCGGGT CGAGGACCAATGTTTGGTCGAGGCAGTCGTGATGGTCATCCTGATGGTGCGGGGCATCATGGAGGTCCCCGTGGAGGATATGATGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCATCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGACCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCANAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGCCAACATTCGGATGCGATTCAATGCTGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAATACAGATCGTG AAAAATTGGACCTCGTTACATCGAACTTTTCCTAGCATCCACCCCTAAGGGAATTTCTCCTTTATCTCGCATAAAC ACAGCGCAACAGTTTCTA ]
[+] EMBL CD143281 [ GAAGATAGGGCACAGATACATTGAAATATTTGAAAATACAATGATGGAGGCCAACATGACCATACAGCGCCAAATGGAAATAAATCAAAGCCGTAGTTCGGGT CGAGGACCAATGTTTGGTCGAGGCAGTCGTGATGGTCATCCTGATGGTGCGGGGCATCATGGAGGTCCCCGTGGAGGATATGATGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGA ]
[+] EMBL CD143316 [ GAAGATAGGGCACAGATACATTGAAATATTTGAAAATACAATGATGGAGGCCAACATGACCATACAGCGCCAAATGGAAATAAATCAAAGCCGTAGTTCGGGT CGAGGACCAATGTTTGGTCGAGGCAGTCGTGATGGTCATCCTGATGGTGCGGGGCATCATGGAGGTCCCCGTGGAGGATATGATGCACCTCCGTCTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCATCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGTGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTAC ACCAGTCAACATTCGGATGCGATTCAATGCTGCTAAC ]
[+] EMBL CD143285 [ GAAGATAGGGCACAGATTCATTGAAATATTTGAAAATACAATGATGGAGGCCAACATGACCATACAGCGCCAAATGGAAATAAATCAAAGCCGTAGTTCGGGT CGAGGACCAATGTTTGGTCGAGGCAGTCGTGATGGTCATCCTGATGGTGCGGGGCATCATGGAGGTCCCCGTGGAGGATATGATGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCATCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTT ]
[+] EMBL CD143296 [ GAAGATAGGGCACAGATACATTGAAATATTTGAAAATACAATGATGGAGGCCAACATGACCATACAGCGCCAAATGGAAATAAATCAAAGCCGTAGTTCGGGT CGAGGACCAATGTTTGGTCGAGGCAGTCGTGATGGTCATCCTGATGGTGCGGGGCATCATGGAGGTCCCCGTGGAGGATATGATGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCATCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAA GATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCANAGTTCGACTGGGCATTCTGT ]
[+] EMBL CD153316 [ CATGACCATACAGTGCCTAATGGAAATAAATCAAAGCCGTAGTTCGTGTACGAGGACCAATGTTTGGTCGAGGCAGTCGAGATGGTCATCCTGATGGCGCGGCGCATCATGGAGGTCCCCGTGGAGGATATGATGCACCTTCGTTTAGACCAAATGGGTCAGGCCCAAACAGAGGTCCAGATCCTGTAAGATATG ]
[+] EMBL CD095838 [ GGTCGAGGCAGTCGTGATGGTCATCCTGATGGTGCGGGGCATCATGGAGGTCCCCGTGGAGGATATGATGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTG AAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAGGGAATTTCTCCTTCATCTCGCATAAACANCAGCGCACCGGTTTCTA ]
[+] EMBL CD095955 [ CCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAAGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGGTCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCTAACCGACCTACCGGAGAGGCAATTGTGAATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTG AAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAGGGAATTTCTCCTTCATCTCGCATAAACAACAGCGCACCAGTTTCTA ]
[+] EMBL CD095969 [ CCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTG AAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAGGGAATTTCTCCTTCATCTCGCATAAACAACAGCGCACCAGTTTCTA ]
[+] EMBL CD095883 [ CCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTG AAAAAATCGGACCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAGGGAATTTCTCCTTCATCTCGCATANACAACAGCGCACCAGTTTCTA ]
[+] EMBL CD095891 [ CCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTG AAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAGGGAATTTCTCCTTCATCTCGCATACACAACAGCGCACCAGTTTCTA ]
[-] EMBL CD146826 [ CTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTG AAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAGGGAATTTCTCCTTCATCTCGCATAAACAACAGCGCACCAGTTTCTAG ]
[-] EMBL CD095934 [ CTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTGAAAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAGGGAATTTCTCCTTCATCTCGCATA CGCACCAGTTTCTAG ]
[-] EMBL CD112021 [ ACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTC ]
[-] EMBL CD197495 [ TTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTG AAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAGGGAATTTCTCCTTCATCTCGCATAAACAACAGCGCACCAGTTTCTAGTCGTCGATCTCCTCCTGTCCACAATAGTAGAGGCCATCAAGGATCACAATACGCTAACTTTGCTCCTCAACAATATGAATATGATGATCCCATAT ]
[-] EMBL CD112515 [ CCAGTTTCTAGTCGTTGATCTCCTCCTGTCCACAATAGTAGAGCCCATCAAGGATCACAATACGCTAACTTTGCTCCTCAACAATATGAATATGATGATATAAATTATGCGGAAGATGTAGGTTGCAATTCAGGTTCAAGTAGACCAGATTTTAATCAATCATAT]
consensusID : consensus_11105#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 835 fasta sequence
[TGCACGGGGCGAAGCGCTATGTCCAAATCACATCTTCTGAAAGTCTAGCTCGGGCCAAGGAGAAACATATGGAGAAGATAGGGCCCAGATACTTTGAAATATTTGAAAGTACGATGCATCGAGGCCAACCAGTGAACCTTCCGCCGGCCAATGGCAATTCATCCAAGCCGTAGTTCCGGGTCGAGGACCCATGTCGGGGCGAGGCAGTCGTGAAGGGTCATCACTGCTGGGTGCGGGGCATCATGGAGGTCCCCGTGGAGGATATGATGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCAAGTTGCCTTCATACTTCCTAGTTACTTTCTTTTCTTATGCCTTGATAATAAGTAAATCTCTGTTCTTCATATTTTAGGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTGAAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAGGGAATTTCTCCTTCATCTCGCATANACAACAGCGCACCAGTTTCTA]
[+] EMBL CD197734 [TGCACGGGGCGAAGCGCTATGTCCAAATCACATCTTCTGAAAGTCTAGCTCGGGCCAAGGAGAAACATATGGAGAAGATAGGGCCCAGATACTTTGAAATATTTGAAAGTACGATGCATCGAGGCCAACCAGTGAACCTTCCGCCGGCCAATGGCAATTCATCCAAGCCGTAGTTCCGGGTCGAGGACCCATGTCGGGGCGAGGCAGTCGTGAAGGGTCATCACTGCTGGGTGCGGGGCATCATGGAGGTCCCCGTGGAGGATATGATGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTC ]
[+] EMBL CD095898 [ GGTCGAGGCAGTCGTG ATGGTCATC CTGAT GGTGCGGGGCATCATGGAGGTCCCCGTGGAGGATATGATGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCAAGTTGCCTTCATACTTCCTAGTTACTTTCTTTTCTTATGCCTTGATAATAAGTAAATCTCTGTTCTTCATATTTTAGGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTGAAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTTAAGGAAATTCTCCTTCATCTCGCATANACAACAGCGCACCAGTTTCTA]
[+] EMBL CD095773 [ CCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCAAGTTGCCTTCATACTTCCTAGTTACTTTCTTTTCTTATGCCTTGATAATAAGTAAATCTCTGTTCTTCATATTTTAGGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTGAAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAGGGAATTTCTCCTTCATCTCGCATANACAACAGCGCACCAGTTTCTA]
[+] EMBL CD096080 [ CCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCAAGTTGCCTTCATACTTCCTAGTTACTTTCTTTTCTTATGCCTTGATAATAAGTAAATCTCTGTTCTTCATATTTTAGGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTGAAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAGGNGATTTCTCCTTCATCTCGCATAAACAACAGCGC ]
[-] EMBL CD155563 [ CCCTATGGTCGACCACCACATGTTTTCGGACACCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTCTCTCCTTTACAACCAGTCAACATTCGGATGC ]
[-] EMBL CD156643 [ TTCTCCTCCTAGAGGGTTCGAAGGACCTTCTCCCTCAAAAGGATATAATTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGG ]
[-] EMBL CD071723 [ GGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCANAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGTAAGTTGCCTTCATACTTCCTAGTTACTTTCTTTTCTTATGCCTTGATAATAAGTAAATCTCTGTTCTTCATATTTTAG ]
consensusID : consensus_11105#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 411 fasta sequence
[ATGCACCTCCGTTTAGTCCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTGAAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAGGGAATTTCTCCTTCATCTCGCATAAACAACAGCGCACCAGTTTCTAGTCGTCGATCTCCTCCTGTCCACAATAGTAGAGGCCATCAAGGATCACAATACGCTAACTTTGCTCCTCAAC]
[-] EMBL CD197822 [ATGCACCTCCGTTTAGTCCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTGAAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAGGGAATTTCTCCTTCATCTCGCATAAACAACAGCGCACCAGTTTCTAGTCGTCGATCTCCTCCTGTCCACAATAGTAGAGGCCATCAAGGATCACAATACGCTAACTTTGCTCCTCAAC]
[-] EMBL CD198079 [ taaaTCAAAGTTCGACTGGGCATTCTGTTCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTGAAAAAATTGGACCTCGTTACGTCGAACTTTTCTTAGCATCCACCCCTAAGGGAATTTCTCCTTCATCTCGCA ]
[+] EMBL CD197918 [ tgtcgtcAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCCTTTACAACCAGTCAACATTCGGATGCGATTCAATGCTGCTAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGCAATGAAGAAAGATCGTGAAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAG ]
[-] EMBL CD182670 [ AAGATCGTGAAAAAATTGGGCCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAGGGAATTTCTCCTTCATCTCGCATAAACAACAGCGCACCAGTTTCTAGTCGTCGATCTCCTCCTGTCCACAATAGTAGAGGCCATCAAGGATCACAATACG ]
[-] EMBL CD182677 [ AAGATCGTGAAAAAACTGGGCCTCGTTACATCGAACTTTTCTTAGCATCCACCCCTAAGGGAATTTCTCCTTCATCTCGCATAAACAACAGCGCACCAGTTTCTA ]
consensusID : consensus_11105#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence
[GAGCCAATATTCGGCACGAGGAATACGCTAACTTTGCTCCTCAACAATATGAATATGATGATATAAATTATGCGGAAGATGTAGGTTGCAATTCAGGTTCAAGTAGACCAGATTTTAATCAGTCATATGACGGTTTTCACAACGGCACAAGTGTAAGGGGACCAATTGGGCATTCAGGAGAGGGTTATTCAGACTACAGATATCGTCATGGGAATCACTACTGAACATGAGGTATTATTTTATGTATACTTTACAATTACAAAAAAATAA]
[+] EMBL CD081733 [GAGCCAATATTCGGCACGAGGAATACGCTAACTTTGCTCCTCAACAATATGAATATGATGATATAAATTATGCGGAAGATGTAGGTTGCAATTCAGGTTCAAGTAGACCAGATTTTAATCAGTCATATGACGGTTTTCACAACGGCACAAGTGTAAGGGGACCAATTGGGCATTCAGGAGAGGGTTATTCAGACTACAGATATCGTCATGGGAATCACTACTGAACATGAGGTATTATTTTATGTATACTTTACAATTACAAAAAAATAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11105#1 ------------------------------------------------------------
consensus_11105#2 ------------------------------------------------------------
consensus_11105#0 CGTGGCAGTGATATAGTGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAACAGAGGTC 60
consensus_11105#3 ------------------------------------------------------------
consensus_11105#1 ---------------------------------------------------------TGC 3
consensus_11105#2 ------------------------------------------------------------
consensus_11105#0 CAGTTCCTGGAAATAGCTCCCAACGGTATCGGGTTGTTGGTGGATCATATGGGTCGTTGC 120
consensus_11105#3 ------------------------------------------------------------
consensus_11105#1 ACGGGGCGAAGCGCTATGTCCAAATCACATCTTCTGAAAGTCTAGCTCGGGCCAAGGAGA 63
consensus_11105#2 ------------------------------------------------------------
consensus_11105#0 ACGGGG-GAAGCG-TATGTCCAATTCACATCTTCTGAAAGTCTAGCTCGGGCAAAGGAGA 178
consensus_11105#3 ------------------------------------------------------------
consensus_11105#1 AACATATGGAGAAGATAGGGCCCAGATACTTTGAAATATTTGAAAGTACGATGCATCGAG 123
consensus_11105#2 ------------------------------------------------------------
consensus_11105#0 AACATATGGAGAAGATAGGGCACAGATACATTGAAATATTTGAAAATACAATG-ATGGAG 237
consensus_11105#3 ------------------------------------------------------------
consensus_11105#1 GCCAACCAGTGAACCTTCCGCCGGCCAATGGCAATTCATCCAAGCCGTAGTTCCGGGTCG 183
consensus_11105#2 ------------------------------------------------------------
consensus_11105#0 GCCAACATG---ACCATACAGCGCCAAATGGAAATAAATCAAAGCCGTAGTTC-GGGTCG 293
consensus_11105#3 ------------------------------------------------------------
consensus_11105#1 AGGACCCATGTCGGGGCGAGGCAGTCGTGAAGGGTCATCACTGCTGGGTGCGGGGCATCA 243
consensus_11105#2 ------------------------------------------------------------
consensus_11105#0 AGGACCAATGTTTGGTCGAGGCAGTCGTGATGG-TCATCCTGAT--GGTGCGGGGCATCA 350
consensus_11105#3 ------------------------------------------------------------
consensus_11105#1 TGGAGGTCCCCGTGGAGGATATGATGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAA 303
consensus_11105#2 ------------------------------------------------------------
consensus_11105#0 TGGAGGTCCCCGTGGAGGATATGATGCACCTCCGTTTAGTCCAAATGGGTCAGGCCCAAA 410
consensus_11105#3 ------------------------------------------------------------
consensus_11105#1 CAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACA 363
consensus_11105#2 ------------------------------------------------------------
consensus_11105#0 CAGAGGTCCAGTTCCTGGAAGATATGCACCCTATGGTCGACCACCACATGTTTTCGGACA 470
consensus_11105#3 ------------------------------------------------------------
consensus_11105#1 CCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAA 423
consensus_11105#2 --------------------------------------------------ATGCACCTCC 10
consensus_11105#0 CCCGGGATACAATTCTCCTCCTAGAGGCTTCGAAGGACCTTCTCCCTCAAAAGGATCTAA 530
consensus_11105#3 ------------------------------------------------------------
consensus_11105#1 TTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGT 483
consensus_11105#2 GTTTAGT---CCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGT 67
consensus_11105#0 TTTTGGGCCACCTGGACATTACGAATACGATGATCCTCAAAGTTCGACTGGGCATTCTGT 590
consensus_11105#3 ---------------------------------------------GAGCCAATATTCGGC 15
** **** *
consensus_11105#1 TCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCC 543
consensus_11105#2 TCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCC 127
consensus_11105#0 TCGTATGAGAGGGTTACCATACTCAGCAACCAAAGAGGATATTGATCGTTTCCTTTCTCC 650
consensus_11105#3 ACGAGGAATACGCTAACTTTGCTCCTCAAC-AATATGAATAT-GATGATATAAATTATGC 73
** * * * * ** * *** **** ** * **** *** * * ** * *
consensus_11105#1 TTTACAACCAGTCAACA-TTCGGATGCGATTCAATGCTGCAAGTTGCCTTCATACTTCCT 602
consensus_11105#2 TTTACAACCAGTCAACA-TTCGGATGCGATTCAATGCTGC-------------------- 166
consensus_11105#0 TTTACAACCAGTCAACA-TTCGGATGCGATTCAATGCTGC-------------------- 689
consensus_11105#3 GGAAGATGTAGGTTGCAATTCAGGTTCAAGTAGACCAGATT------------------- 114
* * ** ** *** * * * * * *
consensus_11105#1 AGTTACTTTCTTTTCTTATGCCTTGATAATAAGTAAATCTCTGTTCTTCATATTTTAGGC 662
consensus_11105#2 ------------------------------------------------------------
consensus_11105#0 ------------------------------------------------------------
consensus_11105#3 ------------------------------------------------------------
consensus_11105#1 TAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGC 722
consensus_11105#2 TAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGC 226
consensus_11105#0 TAACCGACCTACCGGAGAGGCAATTGTGGATTTTGCCAGTCATGATGAAGCGAAGGAGGC 749
consensus_11105#3 ---TTAATCAGTCATATGACGGTTTTCACAACGGCACAAGTGTAAGGGGACCAATTGGGC 171
* * * * ** * ** * * * * ** ***
consensus_11105#1 AATGAAGAAAGA-TCGTGAAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCA 781
consensus_11105#2 AATGAAGAAAGA-TCGTGAAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCA 285
consensus_11105#0 AATGAAGAAAGA-TCGTGAAAAAATTGGACCTCGTTACATCGAACTTTTCTTAGCATCCA 808
consensus_11105#3 ATTCAGGAGAGGGTTATTCAGACTACAGATATCGTCATGGGAATCACTACTGAACATGAG 231
* * * ** ** * * * * ** **** * * * * ** * ***
consensus_11105#1 CCCCTAAGGGAATTTCTCCTTCATCTCGCATANACAACAGCGCACCAGTTTCTA------ 835
consensus_11105#2 CCCCTAAGGGAATTTCTCCTTCATCTCGCATAAACAACAGCGCACCAGTTTCTAGTCGTC 345
consensus_11105#0 CCCCTAAGGGAATTTCTCCTTCATCTCGCATAAACAACAGCGCACCAGTTTCTAGTCGTC 868
consensus_11105#3 GTATTA------TTTTATGTATACTTTACAATTACAAAAAAATAA--------------- 270
** *** * * * ** **** * *
consensus_11105#1 ------------------------------------------------------------
consensus_11105#2 GATCTCCTCCTGTCCACAATAGTAGAGGCCATCAAGGATCACAATACGCTAACTTTGCTC 405
consensus_11105#0 GATCTCCTCCTGTCCACAATAGTAGAGGCCATCAAGGATCACAATACGCTAACTTTGCTC 928
consensus_11105#3 ------------------------------------------------------------
consensus_11105#1 ------------------------------------------------------------
consensus_11105#2 CTCAAC------------------------------------------------------ 411
consensus_11105#0 CTCAACAATATGAATATGATGATCCCATATATGCGGAAGATGTAGGTTGCAATTCAGGTT 988
consensus_11105#3 ------------------------------------------------------------
consensus_11105#1 -----------------------------
consensus_11105#2 -----------------------------
consensus_11105#0 CAAGTAGACCAGATTTTAATCAATCATAT 1017
consensus_11105#3 -----------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||