These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11110#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 28 consensus length = 1491 fasta sequence [AAATCGGATTCTTGAGGTCGTAAGATTTCCGCAGGTCATGGCGGGCATCCCGCAAGCAGTCAATGTTCAC-AGCACCAGTCAAATGACTGACAATTTAAGCAGAAATGAAATAATTCAATGGGTTAAT-CAC-TGTCTTAACAGCAGCTACGGTAAAGTAGAGGAGTTGTGCAGTGGAGCAGCTTATTGTCAGCTGGTGGATATGCTCTTCCCAGGGACGTTGTTGTTTAAGAAAGTCAAATTTAACACAAAGTTGGAGCATGAGTACATTAATAACTTCAAAGTATTACAAGCTCTTTTTAAGAAACATGGCGTAGATAAAGAGGTTCCAATCGAAAAGTTAGTAAAAGGAAAGTTCCAAGATAATTTTGAATTTCTACAATGGTTTAAACGATTTTTCGACGTAAACTATGATGGTCATCTTTATGATGCCTTAACAGCTAGGGGAGGTGAGAAAATTATTGGCAGCGGGAAAACTCCAAACAAGTCCCAACTCGATCAGCCACGCAATAGCATCTCATCAAATGCTAAACCCACAAGTCAAAAGCAAGTAGTTACAACTTTGCGCACCAGTCAGTCTGGCGTTTCAGGAACTCCTACTAATAATAATCATTATTCTGCTGGAGATAATGCAGAAGTGGCCATCCTGAAGCAACAATTCGATCAGCTTACATTAGAGGCTGAACAAAACAAGACTACTATTGAAGGTCTACTTCGTGAAAGGGATTTCTACTTCAACAAGCTACGCAGCATTGAAATAATTTGTCAAGAAAACAGGAAAGTAGACTTGACTAAGAGTATCTTTGAAATCCTTTACGCAACCGAAGATGGTTTCACTGCTCCCGAAGGTGAAGAACCGGAAGAATTTTAGCTGGATCCTGCTTTTAACAACCCGGTACTCCTAATGCCGATTTTAGGCAAATGTTCTTTATTAATCTTATCGATGATAGTAGTTGTAGTACTACTGTCTCAGTTCATTAGCACAATCTGCCTCCCATTATTTGAGTGCTGAAAATGTTGATTTTATTTTTTGGCTTGTATGTATTTGTTAGCGACTTTATTCTGCTTGTAAACATTTTTCAGCCCCTTGGATTTCCATAAAACTATTATTATTGTTACTATCATTATTAATGAACTACATTTTTGGACTTTCACTCTTACCTTAAATACAGTTTTTGCTTTTAGTTTACTCGATAAAACAACATCTGTCATCAAATCACTTATTGTCTGTTTTAATTTATTACAAAGTTCTCTGCAAAGTTTTGGTTATCTGTGAAATTGAAGTACTCCGTTATATAAATATGCATATTGTAAAGATTTTTGAACAAATCTTGCGTTTATATGTTCATATAGGCTCACGTGCCCATGTACCGGA-TTTTTTTCATAAAGAGGTTTTTGAACTTCTTTAGTTTACTACATTTCTATCCTTACAATAAATATGATAACTGATCAGCATACTTTGTTTGTTATGTAAAATGCTAACTTCACATACAG] [+] EMBL CD179680 [AAATCGGATTCTTGAGGTCGTAAGATTTCCGCAGGTCATGGCGGGCATCCCGCAAGCAGTCAATGTTCAC AGCACCAGTCAAATGACTGACAATTTAAGCAGAAATGAAATAATTCAATGGGTTAATNCAC TGTCTTAACAGCAGCTACGGTAAAGTAGAGGAGTTGTGCAGTGGATCAGCTTATTGTCAGCTGGTGGATAT ] [+] EMBL AI067902 [ TTTCCGCAGGTCATGGCGGGCATCCCGCAAGCAGTCAATGTTCAC AGCACCAGTCAAATGACTGACAATTTAAGCAGAAATGAAATAATTCAATGGGTTAAT CAC TGTCTTAACAGCAGCTACGGTAAAGTAGAGGAGTTGTGCAGTGGAGCAGCTTATTGTCAGCTGGTGGATATGCTCTTCCCAGGGACGTTGTTGTTTAAGAAAGTCAAATTTAACACAAAGTTGGAGCATGAGTACATTAATAACTTCAAAGTATTACAAGCTCTTTTTAAGAAACATGGCGTAGATAAAGAGGTTCCAATCGAAAAGTTAGTAAAAGGAAAGTTCCAAGATAATTTTGAATTTCTACAATGGTTTAAACGATTTTTCGACGTAAACTATGATGGTCATCTTTATGATGCCTTAACAGCTAGGGGAGGTGAGAAAATTATTGGCAGCGGGAAAACTCCAAACAAGTCCCAACTCGATCAGCCACGCAATAGCATCTCATCAAATGCTAAACCCACAAGTCAAAAGCAAGTAGTTACAACTTTGCGCACCAGTCAGTCTGGCGTTTCAGGAACTCCTACTAATAATAATCATTATTCTGCTGGAGATAATGCAAAAATGGCCATCCT ] [+] EMBL AI067996 [ TTTCCGCAGGTCATGGCGGGCATCCCGCAAGCAGTCAATGTTCAC AGCACCAGTCAAATGACTGACAATTTAAGCAGAAATGAAATAATTCAATGGGTTAAT CAC TGTCTTAACAGCAGCTACGGTAAAGTAGAGGAGTTGTGCAGTGGAGCAGCTTATTGTCAGCTGGTGGATATGCTCTTCCCAGGGACGTTGTTGTTTAAGAAAGTCAAATTTAACACAAAGTTGGAGCATGAGTACATTAATAACTTCAAAGTATTACAAGCTCTTTTTAAGAAACATGGCGTAGATAAAGAGGTTCCAATCGAAAAGTTAGTAAAAGGAAAGTTCCAAGATAATTTTGAATTTCTACAATGGTTTAAACGATTTTTCGACGTAAACTATGATGGTCATCTTTATGATGCCTTAACAGCTAGGGGAGGTGAGAAAATTATTGGCAGCGGGAAAACTCCAAACAAGTCCCAACTCGATCAGCCACGCAATAGCATCTCATCAAATGCTAAACCCACAAGTCAAAAGCAAGTAGTTACAACTTTGCGCACCAGTCAATCTGGCGTTTCAGGAACTCCTACTA ] [+] EMBL AI068030 [ CAGGTCATGGCGGGCATCCCGCAAGCAGTCAATGTTCAC AGCACCAGTCAAATGACTGACAATTTAAGCAGAAATGAAATAATTCAATGGGTTAAT CAC TGTCTTAACAGCAGCTACGGTAAAGTAGAGGAGTTGTGCAGTGGAGCAGCTTATTGTCAGCTGGTGGATATGCTCTTCCCAGGGACGTTGTTGTTTAAGAAAGTCAAATTTAACACAAAGTTGGAGCATGAGTACATTAATAACTTCAAAGTATTACAAGCTCTTTTTAAGAAACATGGCGTAGATAAAGAGGTTCCAATCGAAAAGTTAGTAAAAGGAAAGTTCCAAGATAATTTTGAATTTCTACAATGGTTTAAACGATTTTTCGACGTAAACTATGATGGTCATCTTTATGATGCCTTAACA ] [+] EMBL AI067385 [ CAGGTCATGGCGGGCATCCCGCAAGCAGTCAATGTTCAC AGCACCAGTCAAATGACTGACAATTTAAGCAGAAATGAAATAATTCAATGGGTTAAT CAC TGTCTTAACAGCAGCTACGGTAAAGTAGAGGAGTTGTGCAGTGGAGCAGCTTATTGTCAGCTGGTGGATATGCTCTTCCCAGGGACGTTGTTGTTTAAGAAAGTCAAATTTAACACAAAGTTGGAGCATGAGTACATTAATAACTTCAAAGTATTACAAGCTCTTTTTAAGAAACATGGCGTAGATAAAGAGGTTCCAATCGAAAAGTTAGTAAAAGGAAAGTTCCAAGATAATTTTGAATTTCTACAATGGTTTAAACGATTTTTCGACGTAAACTATGATGGTCATCTTTATGATGCCTTAACAGCTATGGGAGGTGAGAAAAT ] [+] EMBL AI068285 [ CAGGTCATGGCGGGCATCCCGCAAGCAGTCAATGTTCAC AGCACCAGTCAAATGACTGACAATTTAAGCAGAAATGAAATAATTCAATGGGTTAAT CAC TGTCTTAACAGCAGCTACGGTAAAGTAGAGGAGTTGTGCAGTGGAGCAGCTTATTGTCAGCTGGTGGATATGCTCTTCCCAGGGACGTTGTTGTTTAAGAAAGTCAAATTTAACACAAAGTTGGAGCATGAGTACATTAATAACTTCAAAGTATTACAAGCTCTTTTTAAGAAACATGGCGTAGATAAAGAGGTTCCAATCGAAAAGTTAGTAAAAGGAAAGTTCCAAGATAATTTTGAA ] [-] EMBL CD149931 [ TGTTCACAAGCGCCAGTCGAATGAGTCCAAATTTAAGCAGAAGTGAAATAATTCAGCGGGTTAAT CACGTGTCTTAACAGCAGCTACGGTAAAGTAGAGGAGTTGTGCAATGCAGCAGCTTATTGTCAGCTGGTGGATATGCTCTTCCCAGGGACGTTGTTGTTTAACAAAGTCAAATTTAACACAAAGTTCGAGCATGAGTACATTAATAACTTCAAAGTATTAC ] [+] EMBL CD133100 [ AATGACTGACAATTTAAGCAGAAATGAAATAATTCAATGGGTTAAT CAC TGTCTTAACAGCAGCTACGGTAAAGTAGAGGAGTTGTGCAGTGGAGCAGCTTATTGTCAGCTGGTGGATATGCTCTTCCCAGGGACGTTGTTGTTTAAGAAAGTCAAATTTAACACAAAGTTGGAGCATGAGTACATTAATAACTTCAAAGTATTACAAGCTCTTTTTAAGAAACATGGCGTAGATAAAGAGGTTCCAATCGAAAAGTTAGTAAAAGGAAAGTTCCAAGATAATTTTGAATTTCTACAATGGTTTAAACGATTTTTCGACGTAAACTATGATGGTCATCTTTATGATGCCTTAACAGCTATGGGAGGTGAGAAAATTATTGGCAGCGGGTAAACTCCA ] [+] EMBL CD083210 [ ATAATTCAATGGGTTAAT CAC TGTCTTAACAGCATCTACTGTAAAGTAAAGGAATTGTGCAGTGGAGCAGCTTATTGTCAGCTGGTGGATATGCTCTTtc ] [+] EMBL CD145541 [ TAATTCAATGGGTTAAT CAC TGTCTTAACAGCAGCTACGGTAAAGTGGAGGAGTTGTGCAGTGGAGCAGCTTATTGTCAGCTGGTGGATATGCTCTTCCCAGGGACGTTGTTGTTTAAGAAAGTCAAATTTAACACAAAGTTGGAGCATGAGTACATTAATAACTTCAAAGTATTACAAGCTCTTTTTAAGAAACATGGCGTAGATAAAGAGGTTCCAATCGAAAAGTTAGTAAAAGGAAAGTTCCAAGATAATTTTGAATTTCTACAATGGTTTAAACGATTTTTCGACGTAAACTATGATGGTCATCTTTAT ] [+] EMBL CD179677 [ CAATGGGTTAAT CAC TGTCTTAACAGCAGCTACGGTAAAGTAGAGGAGTTGTGCAGTGGAGCAGCTTATTGTCAGCTGGTGGATATGCTCTTCCCAGGGACGTTGTTGTTTAAGAAAGT ] [+] EMBL CD201342 [ AT CAC TGTCTTAACAGCAGCTACGGTAAAGTAGAGGAGTTGTGCAGTGGAGCAGCTTATTGTCAGCTGGTGGATATGCTCTTCCCAGGGACGTTGTTGTTTAAGAAAGTCAAATTTAACACAAAGTTGGAGCATGAGTACATTAATAACTTCAAAGTATTACAAGCTCTTTTTAAGAAACATGGCGTAGATAAAGAGGTTCCAATCGAAAAGTTAGTAAAAGGAAAGTTCCAAGATAATTTTGAATTTCTACAATGGTTTAAACGATTTTTCGACGTAAACTATGATGGTCATCTTTATGATGCCTTAACAGCTAGGGGAGGTGAGAAAATTATTGGCAGCGGGAAAACTCCAAACAAGTCCCAACTCGATCAGCCACGCAATAGCATCTCATCAAATGCTAAACCCACAAGTCAAAAGCAAGTAGTTACAACTT ] [-] EMBL CD132134 [ GGAGCAGCTAATTGTCAGCTGGTGGATATGCTCTTCCCAGGGACGTTGTTGTTTAAGAAAGTCAAATTTAACACAAAGTTGGAGCATGAGTACATTAATAACTTCAAAGTATTACAAGCTCTTTTTAAGAAACATGGCGTAGATAAAGAGGTTCCAATCGAAAAGTTAGTAAAAGGAAAGTTCCAAGATAATTTTGAATTTCTACAATGGTTTAAACGATTTTTCGACGTAAACTATGATGGTCATCTTTATGATGCCTTAACAGCTAGGGGAGGTGAGAAAATTATTGGCAGCGGGAAAACTCCAAACAAGTCCCAACTCGATCAGCCACGCAATAGCATCTCATCAAATGCTAAA ] [+] EMBL CD122171 [ ATTGTCAGCTGGTGGATATGCTCTTCCCAGGGACGTTGTTGTTTAAGAAAGTCAAATTTAACACAAAGTTGGAGCATGAGTACATTAATAACTTCAAAGTATTACAAGCTCTTTTTAAGAAACATGGCGTAGATAAAGAGGTTCCAATCGAAAAGTTAGTAAAAGGAAAGTTCCAAGATAATTTTGAATTTCTACAATGGTTGAAACGATTTTTCGACGTAAACTATGATGGTCATCTTTATGATGCCTTGACAGCTAGGGGAGGTGAGAAAATTATTGGCAGCGGGAAAACTCCAAACAAGTCCCAACTCGATCAGCCACGCAATAGCATCTCATCAAATGCTAAACCCACAAGTCAAAAGCAA ] [+] EMBL CD122250 [ ATTGTCAGCTGGTGGATATGCTCTTCCCAGGGACGTTGTTGTTTAAGAAAGTCAAATTTAACACAAAGTTGGAGCATGAGTACATTAATAACTTCAAAGTATTACAAGCTCTTTTTAAGAAACATGGCGTAGATAAAGAGGTTCCAATCGAAAAGTTAGTAAAAGGAAAGTTCCAAGATAATTTTGAATTTCTACAATGGTTTAAACGGTTTTTCGACGTAAACTATGATGGTCATCTTTATGATGCCTTAACAGCTAGGGGAGGTGAGAAAATTATTGGCAGCGGGAAAACTCCAAACAAGTCCCAACTCGATCAGCCACGCAATAGCATCTCATCAAATGCTAAACCCACAAGTCAAAAGCAA ] [+] EMBL CD122165 [ ATTGTCAGCTGGTGGATATGCTCTTCCCAGGGACGTTGTTGTTTAAGAAAGTCAAATTTAACACAAAGTTGGAGCATGAGTACATTAATAACTTCAAAGTATTACAAGCTCTTTTTAAGAAACATGGCGTAGATAAAGAGGTTCCAATCGAAAAGTTAGTAAAAGGAAAGTTCCAAGATAATTTTGAATTTCTACAATGGTTTAAACGATTTTTCGACGTAAACTATGATGGTCATCTTTATGATGCCTTAACAGCTAGGGGAGGTGAGAAAATTATTGGCAGCGGGAAAACTCCAAACAAGTCCCAACTCGATCAGCCACGCAATAGCATCTCATCAAATGCTAAACCCACAAGTCAAAAGCAA ] [-] EMBL CD133659 [ GATATGCTCTTCCCAGGGACGTTGTTGTTTAAGAAAGTCAAATTTAACACAAAGTTGGAGCATGAGTACATTAATAACTTCAAAGTATTACAAGCTCTTTTTAAGAAACATGGCGTAGATAAAGAGGTTCCCCTCGAAAAGTTAGTAAAAGGAAAGTTCCAAGATAATTTTGAATTTCTACAATGGTTTAAACGATTTTTCGACGTAAACTATGATGGTCATCTTTATGATG ] [-] EMBL CD202502 [ CTCTTCCCAGGGACGTTGTTGTTTAAGAGAGTCAAATTTAACACAAAGTTGGAGCATGAGTACATTAATAACTTCAAAGTATTACAAGCTCTTTTTAAGAAACATGGCGTAGATAAAGAGGTTCCAATCGAAAAGTTAGTAAAAGGAAAGTTCCAAGATAATTTTGAATTTCTACAATGGTTTAAACGATTTTTCGACGTAAACTATGATGGTCATCTTTATGATGCCTTAACAGCTAGGGGAGGTGAGAAAATTATTGGCAGCGGGAAAACTCCAAACAAGTCCCAACTCGATCAGCCACGCAATAGCATCTCATCAAATGCTAAA ] [+] EMBL AI976026 [ GGCGTAAATAAAGAGGTTCCAATCGCAAAGTTAGTAAAAGGAAAGCTCCAAGATAATTTTGAATCTCTACAGTGGGTTAAACGATTTTTCGACGTAAACTATGATGGTCATCTTTATGATGCCTTAACAGCTAGGGGAGGTGAG ] [+] EMBL CD200977 [ AAAATTATTGGCAGCGGGAAAACTCCAAACAAGTCCCAACTCGATCAGCCACGCAATAGCATCTCATCAAATGCTAAACCCACAAGTCAAAAGCAAGTAGTTACAACTTTGCGCACCAGTCAGTCTGGCGTTTCAGGAACTCCTACTAATAATAATCATTATTCTGCTGGAGATAATGCAGAAGTGGCCATCCTGAAGCAACAATTCGATCAGCTTACATTAGAGGCTGAACAAAACAAGACTACTATTGAAGGTCTACTTCGTGAAAGGGATTTCTACTTCAACAAGCTACGCAGCATTGAAATAATTTGTCAAGAAAACAGGAAAGTAGACTTGACTAAGAGTATCTTTGAAATCCTTTACGCAACCGAAGATGGTTTCACTGCTCCCGAAGGTGAAGAACCGGAAGAATTTTAGCTGGATCCTGCTTTTAACAACCCGGTACTCCTAATGCCGATTTTAGGCAAATGTTCTCTATTAATCTTATCGATGATAGTAGTTGTAGTACTACTGTCTCAGTTCATTAGCACAATCTGCCTCCCATTATTTGAGTGCTG AAATGNTGATTTTATTTTTTGGCTTGGATGTATTTNGTAGCGTCTTTATTCTGCT ] [+] EMBL CD183842 [ ATCCCATCAAATGCTAAACCCACAAGTCAAAAGCAAGTAGTTACAACTTTGCGCACCGGTCAGTCTGGCGTTTCAGGAACTCCTACTAATAATAATCATTATTCTGCTGGAGATAATGCAGAAGTGGCCATCCTGAAGCAACAATTCGATCAGCTTACATTAGAGGCTGAACAAAACAAGACTACTATTGAAGGTCTACTTCGTGAAAGGGATTTCTACTTCAACAAGCTACGCAGCATTGAAATAATTGGTCAAGAAAACAGGAAAGTAGACTTGACTAAGAGTATCTTTGAAATCCTTTACG ] [+] EMBL CD123164 [ CAAGTAGTTACAACTTTGCGCACCAGTCAGTCTGGCGTTTCAGGAACTCCTACTAATAATAATCATTATTCTGCTGGAGATAATGCAGAAGTGGCCATCCTGAAGCAACAACTCGATCAGCTTACATTAGAGGCTGAACAAAACAAGACTACTATTGAAGGTCTACTTCGTGAAAGGGATTTCTACTTCAACAAGCTACGCAGCATTGAAATAATTTGTCAAGAAAACAGGAAAGTAGACTTGACTAAGAGTATCTTTGAAATCCTTTACGCAACCGAAGATGGTTTCACTGCTCCCGAAGGTGAAGAACCGGAAGAATTTTAGCTGGATC ] [+] EMBL CD194424 [ GTAGTTACAACTTTGCGCACCAGTCAGTCTGGCGTTTCAGGAACTCCTACTAATAATAATCATTATTCTGCTGGAGATAATGCAGAAGTGGCCATCCTGAAGCAACAATTCGATCAGCTTACATTAGAGGCTGAACAAAACAAGACTACTATTGAAGGTCTACTTCGTGAAAGGGATTTCTACTTCAACAAGCTACGCAGCATTGAAATAATTTGTCAAGAAAACAGGAAAGTAGACTTGACTAAGAGTATCTTTGAAATCCTTTACGCAACCG ] [+] EMBL CD180956 [ CGTTTCAGGAACTCCTACTAATAATAATCATTATTCTGCTGGAGATAATGCAGAAGTGGCCATCCTGAAGCAACAATTCTATCAGCTTACATTAGAGGCTGAACAAAACAAGACTACTATTGAAGGTCTACTTCGTGAAAGGGATTTCTACTTCAACAAGCTACGCAGCATTGAAATAATTTGTCAAGAAAACAGGAAAGTAGACTTGGCTAAGAGTATCTTTGAAATCCTTTACGCAACCGAAGATGGTTTCACTGCTCCCGAAGGTGAAGAACCGGAAGAATTTTAGCTGGt ] [+] EMBL AI976675 [ GCCATCCTGAAGCAACAATTCGATCAGCTTACATTAGAGGCTGAACAAAACAAGACTACTATTGAAGGTCTACTTCGTGAAAGGGATTTCTACTTCAACAAGCTACGCAGCATTGAAATAATTTGTCAAGAAAACAGGAAAGTAGACTTGACTAAGAGTATCTTTGAAATCCTTTACGCAACCGAAGATGGTTTCACTGCTCCCGAAGGTGAAGAACCGGAAGAATTTTAGCTGGATCCTGCTTTTAACAACCCGGTACTCCTAATGCCGATTTTAGGCAAATGTTCGTTATTAATCTTATCGATGATAGTAGGTGTAGGACTACTGTCTCAGTTCATTAGCACAATCTGCCTGCCATTATTTGAGTGCTGAAAATGTTGATTGTATTTATTGCTTTGTATGTATTTGTTAGCGACTTTATTCTGCTTGTAAACATTTTTCAGCCCCTTGGATTTCCATAAAACTATTATTATTGATACTATCATTATTAATGAACTACATTTTTGGACTTTCACTCTTACCTTAAATACAGNCATTGCTTTTAGTTTACTCcg ] [+] EMBL CD182344 [ AGGTCCACTTCGTGAAAGGGATTTCTACTTCAACAAGCTACGCAGCATTGAAATAATTTGTCAAGAAAACAGGAAAGTAGACTTGACTAAGAGTATCTTTGAAATCCTTTACGCAACCGAAGATGGTTTCACTGCTCCCGAAGGTGAAGAACCGGAAGAATTTTAGCTGGATCCTGCTTTTAACAACCCGGTACTCCTAATGCCGATTTTAGGCAAATGTTCTTTATTAATCTTATCGATGATAGTAGTTGTAGTACTACTGTCTCAGTTCATTAGCACAATCTGCCTCCCATTATTTGAGTGCTGAAAATGTTGATTNTATTTTTTGGCTTGNATGT ] [-] EMBL CD133351 [ TTAGCACAATCTGCCTCCCATTATTTGAGTGCTGAAAATGTTGATTTTATTTTTTGCTTTGTATGTATTTGTTAGCGCCTTTATTCTGCTTGTAAACATTTTCCAGCCCCTTGGATTTCCATAAAACTATTATTATTGTTACTATCATTATTAATGAACTACATTTTTGGACTTTCACTCTTACCTTAAATACAGTTTTTGCTTTTAGTTTACTCGATAAAACAACATCTGTCATCAAATCACTTATTGTCTGTTTTAATTTATTACAAAGTTCTCTGCAAAGTTTTGGTTATCTGTGAAATTGAAGTACTCCGTTATATAAATATGCATATTGTAAAGATTTTTGAACAAATCTTGCGTTTATATGTTCATATAGGCTCACGTGCCCATGTACCGGA TTTTTTTCATAAAGAGGTTTTTGAACTTCTTTAGTTTACTACATTTCTATCCTTACAATAAATATGATAACTGATCAGCATACTTTGTTTGTTATGTAAAATGCTAACTTCACATACAG] [-] EMBL CD132916 [ ATTATTATTGTTACTATCATTATTAATGAACTACATTTTTGGACTTTCACTCTTACCTTAAATACGGTTTTTGCTTTTAGTTTACTCGATAAAACAACATCTGTCATCAAATCACTTATTGTCTGTTTTAATTTATTACAAAGTTCTCTGCAAAGTTTTGGTTATCTGTGAAATTGAAGTACTCCGTTATATAAATATGCATATTGTAAAGATTTTTGAACAAATCTTGCGTTTATATGTTCATATAGGCTCACGTGCCCATGTACCGGATTTTTTTTCATAAAGAGGTTTTTGAACTTCTTTAGTTTACTACATTTCTATCCTTACAATAAATATGATAACTGATCAGCATACTTTGTTTGTTATGTAAAATGCTAACTTCACATACAG] consensusID : consensus_11110#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 496 fasta sequence [CTCGAGGCCAAGACCGGACGTTGTTGAAATCCTTTACGCAACCGAAGATGGTTTCACTGCTCCCGAAGGTGAAGAACCGGAAGAATTTTAGCTGGATCCTGCTTTTAACAACCCGGTACTCCTAATGCCGATTTTAGGCAAATGTTCTTTATTAATCTTATCGATGATAGTAGTTGTAGTACTACT-GTCTCAGTTCATTAGCACAATCTGCCTCCCATTATTTGAGTGCTGAAAATGTTGATTTTATTTTTTGCTTTGTATGTATTTGTTAGCGTCTTTATTCTGCTTGTAAACATTTTCCAGCCCCTTGGATTTCCATAAAACTATTATTATTGTTACTATCATTATTAATGAACTACATTTTTGGACTTTCACTCTTACCTTAAATACAGTTTTTGCTTTTAGTTTACTCGATAAAACAACATCTGTCATCAAATCACTTATTGTCTGTTTTAATTTATTACAAAGTTCTCTGCAAAGTTTTGGTTATCTGTGA] [+] EMBL CD084417 [CTCGAGGCCAAGACCGGACGTTGTTGAAATCCTTTACGCAACCGAAGATGGTTTCACTGCTCCCGAAGGTGAAGAACCGGAAGAATTTTAGCTGGATCCTGCTTTTAACAACCCGGTACTCCTAATGCCGATTTTAGGCAAATGTTCTTTATTAATCTTATCGATGATAGTAGTTGTAGTACTACT GTCTCAGTTCATTAGCACAATCTGCCTCCCATTATTTGAGTGCTGAAAATGTTGATTTTATTTTTTGCTTTGTATGTATTTGTTAGCGTCTTTATTCTGCTTGTAAACATTTTCCAGCCCCTTGGATTTCCATAAAACTATTATTATTGTTACTATCATTATTAATGAACTACATTTTTGGACTTTCACTCTTACCTTAAATACAGTTTTTGCTTTTAGTTTACTCGATAAAACAACATCTGTCATCAAATCACTTATTGTCTGTTTTAATTTATTACAAAGTTCTCTGCAAAGTTTTGGTTATCTGTGA] [+] EMBL CD130236 [ TGAAATCCTTTACGCAACCGAAGATGGTTTCACTGCTCCCGAAGGTGAAGAACCGGAAGAATTTTAGCTGGATCCTGCTTTTAACAACCCGGTACTCCTAATGCCGATTCTAGGCAAATGTTCTTTATTAATCTTATCGATGATAGTAGTTGTAGTACTACT G ] [-] EMBL CD119654 [ ACAACCCGGTACTCCTAATGCCGATTTTAGGCAAATGTTCTTTATTAATCTTATCGATGATAGTAGTTGTAGTACTACT GTCTCAGTTCATTAGCACAATCTGCCTCCCATTATTTGAGTGCTGAAAATGTTGATTTTATTTTTTGCTTTGTATGTATTTGTTAGCGTCTTTATTCTGCTTGTAAACATTTTCCAGCCCCTTGGATTTCCATAAAACTATTATTATTGTTACTATCATTATTAATGAACTACATTTTTGGACTTTCACTCTTACCTTAAATACAGTTTTTGCTTTTAGTTTACTCGATAAAACAACATCTGTCATCAAATCACTTATTGTCTGTTTTAATTTATTACAAAGTTCTCTGCA ] [-] EMBL CD119655 [ TAGTA TACTGGTCTCAGTTCATTAGCACAATGTGCCTCCCATTATTTGAGTGCTGAAAATGTTGATTTTATTTTTTGCTTTGTATGTATTTGTTAGCGTCTTTATTCTGCTTGTAAACATTTTCCAGCCCCTTGGATTTCCATAAAACTATTATTATTGTTACTATCATTATTAATGAACTACATTTTTGGACTTTCACTCTTACCTTAAATACAGTTTTTGCTTTTAGTTTACTCGATAAAACAACATCTGTCATCAAATCACTTATTGTCTGTTTTAATTTATTACAAAGTTCTNTGCA ] consensusID : consensus_11110#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence [GACAGCGTTGATGGCGAGGGCGAAGGGGAGGTGGGAAAATTATTGGCAGCGGGAAAACTCCAAACAAGTCCCAACTCGATCAGCCACGCAATAGCATCTCATCAAATGCTAAACCCACAAGTCAAAAGCAAGTAGTTACAACTTTGCGCACCAGTCAGTCTGGCGTTTCAGGAACTCCTACTAATAATAATCATTATTCTGCTGGAGATAATGCAGAAGTGGCCATCCTGAAGCAACAATTCGATCAGCTTACATTAGAGGCTGAACAAAACAAGACTACTATTGAAGGTCTACTTCGTGAAAGGGATTTCTACTTCAACAAGCTACGCAGCATTGAAATAATTTGTCAAGAAAACAGGANAGTAGACTTGACTAAGAGTATCTTTGAAATCCTTTACGCAACCGAAGATGGGTTCACTGCNTCCGAAGGTGAAGAACCNGGAGAATNNTAGCTGGGATCTGCTTTA] [+] EMBL CD182391 [GACAGCGTTGATGGCGAGGGCGAAGGGGAGGTGGGAAAATTATTGGCAGCGGGAAAACTCCAAACAAGTCCCAACTCGATCAGCCACGCAATAGCATCTCATCAAATGCTAAACCCACAAGTCAAAAGCAAGTAGTTACAACTTTGCGCACCAGTCAGTCTGGCGTTTCAGGAACTCCTACTAATAATAATCATTATTCTGCTGGAGATAATGCAGAAGTGGCCATCCTGAAGCAACAATTCGATCAGCTTACATTAGAGGCTGAACAAAACAAGACTACTATTGAAGGTCTACTTCGTGAAAGGGATTTCTACTTCAACAAGCTACGCAGCATTGAAATAATTTGTCAAGAAAACAGGANAGTAGACTTGACTAAGAGTATCTTTGAAATCCTTTACGCAACCGAAGATGGGTTCACTGCNTCCGAAGGTGAAGAACCNGGAGAATNNTAGCTGGGATCTGCTTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11110#0 AAATCGGATTCTTGAGGTCGTAAGATTTCCGCAGGTCATGGCGGGCATCCCGCAAGCAGT 60 consensus_11110#1 ------------------------------------------------------------ consensus_11110#2 ------------------------------------------------------------ consensus_11110#0 CAATGTTCACAGCACCAGTCAAATGACTGACAATTTAAGCAGAAATGAAATAATTCAATG 120 consensus_11110#1 ------------------------------------------------------------ consensus_11110#2 ------------------------------------------------------------ consensus_11110#0 GGTTAATCACTGTCTTAACAGCAGCTACGGTAAAGTAGAGGAGTTGTGCAGTGGAGCAGC 180 consensus_11110#1 ------------------------------------------------------------ consensus_11110#2 ------------------------------------------------------------ consensus_11110#0 TTATTGTCAGCTGGTGGATATGCTCTTCCCAGGGACGTTGTTGTTTAAGAAAGTCAAATT 240 consensus_11110#1 ------------------------------------------------------------ consensus_11110#2 ------------------------------------------------------------ consensus_11110#0 TAACACAAAGTTGGAGCATGAGTACATTAATAACTTCAAAGTATTACAAGCTCTTTTTAA 300 consensus_11110#1 ------------------------------------------------------------ consensus_11110#2 ------------------------------------------------------------ consensus_11110#0 GAAACATGGCGTAGATAAAGAGGTTCCAATCGAAAAGTTAGTAAAAGGAAAGTTCCAAGA 360 consensus_11110#1 ------------------------------------------------------------ consensus_11110#2 ------------------------------------------------------------ consensus_11110#0 TAATTTTGAATTTCTACAATGGTTTAAACGATTTTTCGACGTAAACTATGATGGTCATCT 420 consensus_11110#1 ------------------------------------------------------------ consensus_11110#2 ------------------------------------------------------------ consensus_11110#0 TTATGATGCCTTAACAGCTAGGGGAGGTGAGAAAATTATTGGCAGCGGGAAAACTCCAAA 480 consensus_11110#1 ------------------------------------------------------------ consensus_11110#2 ------------------------------------------------------------ consensus_11110#0 CAAGTCCCAACTCGATCAGCCACGCAATAGCATCTCATCAAATGCTAAACCCACAAGTCA 540 consensus_11110#1 ------------------------------------------------------------ consensus_11110#2 ------------------------------------------------------------ consensus_11110#0 AAAGCAAGTAGTTACAACTTTGCGCACCAGTCAGTCTGGCGTTTCAGGAACTCCTACTAA 600 consensus_11110#1 ------------------------------------------------------------ consensus_11110#2 ------------------------------------------------------------ consensus_11110#0 TAATAATCATTATTCTGCTGGAGATAATGCAGAAGTGGCCATCCTGAAGCAACAATTCGA 660 consensus_11110#1 ------------------------------------------------------------ consensus_11110#2 ------------------------------------------------------------ consensus_11110#0 TCAGCTTACATTAGAGGCTGAACAAAACAAGACTACTATTGAAGGTCTACTTCGTGAAAG 720 consensus_11110#1 ------------------------------------------------------------ consensus_11110#2 ------------------------------------------------------------ consensus_11110#0 GGATTTCTACTTCAACAAGCTACGCAGCATTGAAATAATTTGTCAAGAAAACAGGAAAGT 780 consensus_11110#1 -------------------------------------------------------CTCGA 5 consensus_11110#2 -------------------------------------------------GACAGCGTTGA 11 * consensus_11110#0 AGACTTGACTAAGAGTATCTTTGAAATCCTTTACGCAACCGAAGATGGTTTCACTGCTCC 840 consensus_11110#1 GGCCAAGACC--GGACGTTGTTGAAATCCTTTACGCAACCGAAGATGGTTTCACTGCTCC 63 consensus_11110#2 TGGCGAGGGCGAAGGGGAGGTGGGAAAATTATTGGCAGCGGGAAAACTCCAAACAAGTCC 71 * * * * * ** * * *** * * * * ** *** consensus_11110#0 CGAA--GGTGAAGAACCGGAAGAATTTTAGCTGGATCCTGCTTTTAACAACCCGGTACTC 898 consensus_11110#1 CGAA--GGTGAAGAACCGGAAGAATTTTAGCTGGATCCTGCTTTTAACAACCCGGTACTC 121 consensus_11110#2 CAACTCGATCAGCCACGCAATAGCATCTCATCAAATGCTAAACCCACAAGTCAAAAGCAA 131 * * * * * ** * * * ** ** * * * * consensus_11110#0 CTAATGCCGATTTTAGGCAAATGTTCTTTATTAATCTTATCGA----TGATAGTAGTTGT 954 consensus_11110#1 CTAATGCCGATTTTAGGCAAATGTTCTTTATTAATCTTATCGA----TGATAGTAGTTGT 177 consensus_11110#2 GTAGTTACAACTTTGCGCACCAGTCAGTCTGGCGTTTCAGGAACTCCTACTAATAATAAT 191 ** * * * *** *** ** * * * * * * ** ** * * consensus_11110#0 AGTACTACTGTCTCAGTTCATTAGCACAATCTGCCTCCCATTATTTGAGTGCTGAAAATG 1014 consensus_11110#1 AGTACTACTGTCTCAGTTCATTAGCACAATCTGCCTCCCATTATTTGAGTGCTGAAAATG 237 consensus_11110#2 CATTATTCTGCTGGAGATAAT--GCAGAAGTGGCCATCC-TGAAGCAACAATTCGATCAG 248 * * *** ** * ** *** ** *** ** * * * * * * consensus_11110#0 TTGATTTTATTTTTTGGCTTGTATGTATTTGTTAGCGACTTTATTCTGCTTGTAAACATT 1074 consensus_11110#1 TTGATTTTATTTTTTGCTTTGTATGTATTTGTTAGCGTCTTTATTCTGCTTGTAAACATT 297 consensus_11110#2 CTTACATTAGAGGCTGAACAAAACAAGACTACTATTGAAGGTCTACTTCGTGAAAGGGAT 308 * * *** ** * * ** * * * ** * ** ** * consensus_11110#0 TTTCAGCCCCTTGGATTTCCATAAAACTATTATTATT-GTTACTATCATTAT-TAATGAA 1132 consensus_11110#1 TTCCAGCCCCTTGGATTTCCATAAAACTATTATTATT-GTTACTATCATTAT-TAATGAA 355 consensus_11110#2 TTCTA-CTTCAACAAGCTACGCAGCATTGAAATAATTTGTCAAGAAAACAGGANAGTAGA 367 ** * * * * * * * * * ** *** ** * * * * * * consensus_11110#0 CTACATTTTTGGACTTTCACTCTTACCTTAAATA-CAGTTTTTGCTTTTAGTTTACTCGA 1191 consensus_11110#1 CTACATTTTTGGACTTTCACTCTTACCTTAAATA-CAGTTTTTGCTTTTAGTTTACTCGA 414 consensus_11110#2 CTTGACTAAGAGTATCTTTGAAATCCTTTACGCAACCGAAGATGGGTTCACTGCNTCCGA 427 ** * * * * * * * *** * * * ** ** * * *** consensus_11110#0 TAAAACAACATCTGTCATCAAATCACTTATTGTCTGTTTTAATTTATTACAAAGTTCTCT 1251 consensus_11110#1 TAAAACAACATCTGTCATCAAATCACTTATTGTCTGTTTTAATTTATTACAAAGTTCTCT 474 consensus_11110#2 -AGGTGAAGAACCNGGAGAATNNTAGCTGGGATCTGCTTTA------------------- 467 * ** * * * * * * **** **** consensus_11110#0 GCAAAGTTTTGGTTATCTGTGAAATTGAAGTACTCCGTTATATAAATATGCATATTGTAA 1311 consensus_11110#1 GCAAAGTTTTGGTTATCTGTGA-------------------------------------- 496 consensus_11110#2 ------------------------------------------------------------ consensus_11110#0 AGATTTTTGAACAAATCTTGCGTTTATATGTTCATATAGGCTCACGTGCCCATGTACCGG 1371 consensus_11110#1 ------------------------------------------------------------ consensus_11110#2 ------------------------------------------------------------ consensus_11110#0 ATTTTTTTCATAAAGAGGTTTTTGAACTTCTTTAGTTTACTACATTTCTATCCTTACAAT 1431 consensus_11110#1 ------------------------------------------------------------ consensus_11110#2 ------------------------------------------------------------ consensus_11110#0 AAATATGATAACTGATCAGCATACTTTGTTTGTTATGTAAAATGCTAACTTCACATACAG 1491 consensus_11110#1 ------------------------------------------------------------ consensus_11110#2 ------------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||