These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11116#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 25 consensus length = 1085 fasta sequence [CGTTTCAGTTTCGGTTGGGGTGAGGATGCAGTTAACAAGATATGTTAAGATATGTGAGACTGAGGATGACCAGCCAATCGAGGTGCCTCTGGAAGACGATGACACTCTTTTACTATCAACAT-TAACTGCTCAGTTCCCAGATTGCACGGGACTTAAGTACAGGTCTGGCGACTCAGGGTGCTATCGTGGTGTTCGTCTTTTGGATGACCGTTTATTTCCTCCCACTGATGGACAATGGCATGGAAACACTTTTTG-TTGTGTCTTTCCAAAATGTTCCAAGAGGAAAGCAGATGAAGACTCGTTAGATTCCAAAATGAAGCTAAAACGTTTTGATAAAAAAACA-TGTACGGACTTGATAGTGTTAAACTAGCCTTGGCGGCCAGATGAAGATACTTTACGTGACTACTTTAGCCAGTACGGCGACCTTGTCATGATCCAGATCAA-ACGAGACCCAGTAACCCAGCAAAGCAAGGGATATGGATTTATCCGCTTCGCTGATTATACGGCACAAGTTATGTGTTTGGCTGAACGACATACCA-TTGAAAATCGACAGTGCGATGTCCGCATTCCTATATCAAAGATGGAGGGTGACCGTCAAGAAGTTTCCCGAAAGGTTCACATTGGAAGGTTAACAGAAGATATTAGTCCCGAAGCTCTGCGTCAGCATTTCTCCCAATATGGAAGAGTATGTGATGTTTTCATACCGAAACCCTTTCGATCGTTTGCCTTCATTACGTTCGATGACCCCGAGGTCGCAGCTTCTTTGTTGGGCAAGGACCAAGAAATTCAAGGTGTTCGTATAAGCGTTGGTTCTGCAGTTCCCAAGCTCCCTCCTTCTGCTCGTCAAAGTAACACTAATAATCAACGAATCCCGGTTACCTCGATGCAAGCTGCTCTTCAGTCAACAATGATGGGAACTCAACAATGGGGTGCTTGGCCACCAGCTTATGGGGGTATGGTTCAGAATAACCGATATGGAGGCCAACATTCTTCCGGTAAAGGTGGAAGTCGAAACGGATCAATGGGGGGAATGAATCCAGCAGCTGCAGCCGCTGCTGCTGTTTTAGCAGCAGAATATACTCGTG] [-] EMBL CD180918 [CGTTTCAGTTTCGGTTGGGGTGAGGATGCAGTTAACAAGATATGTTAAGATATGTGAGACTGAGGATGACCAGCCAATCGAGGTGCCTCTGGAAGACGATGACACTCTTTTACTATCAACAT TAACTGCTCAGTTCCCAGATTGCACGGGACTTAAGTACAGGTCTGGCGACTCAGGGTGCTATCGTGGTGTTCGTCTTTTGGATGACCGTTTAT ] [+] EMBL CD112953 [ ATGACACTCTTTTACTATCAACATCTAACTGCTCAGTTCCCAGATTGCACGGCACTTAAGTACAGGTCTGGCGACTCATGGTGCTATCGTGGTGTTCGTCTTTTGGATGACCGTTTATTTCCTCCCACTGATGGACAACGGCATGGAAACACTTTT ] [+] EMBL CD112960 [ ATGACACTCTTTTACTATCAACAT TAACTGCTCAGTTCCCAGATTGCACGGGACTTAAGTACAGGTCTGGCGACTCAGGGTGCTATCGTGGTGTTCGTCTTTTGGATGACCGTTTATTTCCTCCCACTGATGGACAGTGGCATGGATACACTTTTTG GTGGGTCTTTCCCAAATG ] [+] EMBL CD144272 [ TGCTCAGTTCCCAGATTGCACGGGACTTAAGTACAGGTCTGGCGACTCAGGGTGCTATCGTGGTGTTCGTCTTTTGGATGACCGTTTATTTCCTCCCACTGATGGACAATGGCATGGAAACACTTTTTG TTGTGTCTTTCCAAAATGTTCCAAGAGGAAAGCAGATGAAGACTCGTTAGATTCCAAAATGAAGCTAAAACGTTTTGATAAAAAAACA TGTACGGACTTGATAGTGTT ] [-] EMBL CD119176 [ TGCTCAGTTCCCAGATTGCACGGCACTTAAGTACAGGTCTGTCGACTCAGGGTGCTATCGTGCTGTTCGTATTTTGGATGACCGTTTATTTCCTCCCACTGATGGACAATGGCATGGAAACACTCTTTGCTTGTGTCTTTCCAAAATGTTCCAAGAGGAAAGCAGATGAAGACTCGTTAGATTCCAAAATGAAGCTAAAACGTTTTGATTCAAAAACACTGTACGGACTTGATAGTGTTAAACTAGCCTTGGCGGCCAGATGAAGATACTTTACGTGACTACTTTAGCCAGTACGGCGACCTTGTCATGATCCAGATCAAGACGAGACCCAGTAACCCAGCAAAGCAAGGGATATGGATTTATCCGCTTCGCTGATTATACGGCACAAGTTATGTGTTTGGCTGAACGACATACCACTTGAAAAT ] [-] EMBL CD119095 [ TGCTCAGTTCCCAGATTGCACGGGACTTAAGTACAGGTCTGGCGACTCAGGGTGCTATCGTGGTGTTCGTCTTTTGGATGACCGTTTATTTCCTCCCACTGATGGACAATGGCATGGAAACACTTTTTG TTGTGTCTTTCCAAAATGTTCCAAGAGGAAAGCAGATGAAGACTCGTTAGATTCCAAAATGAAGCTAAAACGTTTTGATAAAAAAACA TGTACGGACTTGATAGTGTTA ] [+] EMBL CD187769 [ CTGGCGACTCAGGGTGCTATCGTGGTGTTCGTCTTTTGGATGGCCGTTTATTTCCTCCCACTGATGGACAATGGCATGGAAACACTTTTTG TTGTGTCTTTCCAAAATGTTCCAAGAGGAAAGCAGATGAAGACTCGTTAGATTCCAAAATGAAGCTAAAACGTTTTGATAAAAAAACA TGTACGGACTTGATAGTGTT ] [-] EMBL BG932081 [ ggttTCAGGGTGCTATCGTGGTGTTCGTCTTTTGGATGACCGTTTATTTCCTCCCACTGATGGACAATGGCATGGAAACACTTTTTG TTGTGTCTTTCCAAAATGTTCCAAGAGGAAAGCAGATGAAGACTCGTTAGATTCCAAAATGAAGCTAAAACGTTTTGATAAAAAAACA TGTACGGACTTGATAGTGTTA ] [-] EMBL CD182162 [ TTCCTCCCACTGATGGACAATGGCATGGAAACACTTTTTG TTGTGTCTTTCCAAAATGTTCCAAGAGGAAAGCAGATGAAGACTCGTTAGATTCCAAAATGAAGCTAAAACGTTTTGATAAAAAAACA TGTACGGACTTGATAGTGTTA ] [-] EMBL CD182133 [ TTCCTCCCACTGATGGACAATGGCATGGAAACACTTTTTG TTGTGTCTTTCCAAAATGTTCCAAGAGGAAAGCAGATGAAGACTCGTTAGATTCCAAAATGAAGCTAAAACGTTTTGATAAAAAAACA TGTACGGACTTGATAGTGTTA ] [+] EMBL CD148025 [ GAAGATACTTTACGTGACTACTTTAGCCAGTACGGCGACCTTGTCATGATCCAGATCAA ACGAGACCCAGTAACCCAGCAAAGCAAGGGATATGGATTTATCCGCTTCGCTGATTATACGGC ] [-] EMBL CD097479 [ AAGATACTTTACGTGACTACTTTAGCCAGTACGGCGACCTTGTCATGATCCAGATCAA ACGAGACCCAGTAACCCAGCAAAGCAAGGGATATGGATTTATCCGCTTCGCTGATTATACGGCACAAGTTATGTGTTTGGCTGAACGACATACCA TTGAAAATCGACAGTGCGATGTCCGCATTCCTATATCAAAGATGGAGGGTGACCGTCAAGAAGTTTCCCGAAAGGTTCACATTGGAAGGTTAACAGAAGATATTAGTCCCGAAGCTCTGCGTCAGCATTTCTCCCAATATGGAAGAGTATGTGATGTTTTCATACCGAAACCCTTTCGATCGTTTGCCTTCATTACGT ] [+] EMBL AI975860 [ GACTACTTTAGCCAGTACGGCGACCTTGTCATGATCCAGATCAA ACGAGACCCAGTAACCCAGCAAAGCAAGGGATATGGATTTATCCGCTTCGCTGATTATACGGCACAAGTTATGTGTTTGGCTGAACGACATACCA TTGAAAATCGACAGTGCGATGTCCGCATTCCTATATCAAAGATGGAGGGTGACCGTCAAGAAGTTTCCCGAAAGGTTCACATTGGAAGGTTAACAGAAGATATTAGTCCCGAAGCTCTGCGTCAGCATTTCTCCCAATATGGAAGAGTATGTGATGTTTTCATACCGAAACCCTTTC ATCGTTTGCCTTCATTACGTTCGATGACCNCGAGGTCGCAGCTTCTTTGTTGGGCAAGGACCA ] [-] EMBL CD119116 [ ACTACTTTAGCCAGTACGGCGACCTTGTCATGATCCAGATCAA ACGAGACCCAGTAACCCAGCAAAGCAAGGGATATGGATTTATCCGCTTCGCTGATTATACGGCACAAGTTATGTGTTTGGCTGAACGACATACCA TTGAAAATCGACAGTGCGATGTCCGCATTCCTATATCAAAGATGGAGGGTGACCGTCAAGAAGTTTCCCGAAAGGTTCACATTGGAAGGTTAACAGAAGATATTAGTCCCGAAGCTCTGCGTCAGCATTTCTCCCAATATGGAAGAGTATGTGATGTTTTCATACCGAAACCCTTTCGATCGTTTGCCTTC ] [-] EMBL CD157065 [ ACTACTTTAGCCAGTACGGCGACCTTGTCATGATCCAGATCAA ACGAGACCCAGTAACCCAGCAAAGCAAGGGATATGGATTTATCCGCTTCGCTGATTATACGGCACAAGTTATGTGTTTGGCTGAACGACATACCA TTGAAAATCGACAGTGCGATGTCCGCATTCCTATATCAAAGATGGAGGGTGACCGTCAAGAAGTTTCCCGAAAGGTTCACATTGGAAGGTTAACAGAAGATATTAGTCCCGAAGCTCTGCGTCAGCATTTCTCCCAATATGGA ] [-] EMBL CD115607 [ CTTTAGCCAGTACGGCGACCTTGTCATGATCCAGATCAA ACGAGACCCAGTAACCCAGCAAAGCAAGGGATATGGATTTATCCGCTTCGCTGATTATACGGCACAAGTTATGTGTTTGGCTGAACGACATACCA TTGAAAATCGACAGTGCGATGTCCGCATTCCTATATCAAAGATGGAGGGTGACCGTCAAGAAGTTTCCCGAAAGGTTCACATTGGAAGGTTAACAGAAGATATTAGTCCCGAAGCTCTGCGTCAGCATTTCTCCCAATATGGAAGAGTATGTGATGTTTTCATACCGAAACCCTTTCGATCGTTTGCATTCATTACGTTCGATGCCCCCCCCCCCGCAGATTGTTTGTTGGGCAAGGACCAAGAAATTCAAGGTGTTCCTATAAGCGTTGGTTTTGCAGTTCCCAAGCTCCCTCCTTCTGCTCGTCAAAGTAACA ] [+] EMBL CD158697 [ GTCCGCATTCCTATATCAAAGATGGAGGGTGACCGTCAAGAAGTTTCCCGAAAGGTTCACATTGGAAGGTTAACAGAAGATATTAGTCCCGAAGCTCTGCGTCAGCATTTCTCCCAATATGGAAGAGTATGTGATGTTTTCATACCGAAACCCTTTCGATCGTTTGCCTTCATTGCGTTCGATGACCCCGAGGTCGCAGCTTCTTTGTTGGGCAAGGACCAAGAAATTCAAGGTGTTCGTATAAGCGTTGGTTCTGCAGTTCCCAAGCTCCCTCCTTCTGCTCGTCAAAGTAACACTAATAATCAACGAATCCCGGTTA ] [-] EMBL CD144960 [ GGTGACCGTCAAGAAGTTTCCCGAAAGGTTCACATTGGAAGGTTAACAGAAGATATTAGTCCCGAAGCTCTGCGTCAGCATTTCTCCCAATATGGAAGAGTGTGTGATGTTTTCATACCGAAACCCTTTCGATCGTTTGCCTTCATTACGTTCGATGACCCCGAGGTCGCAGCTTCTTTGTTGGGCAAGGACCAAGAAATTCAAGGTGTTCGTATAAGCGTTGGTTCTGCAGTTCCCAAGCTCCCTCCTTCTGCTCGTCAAAGAAACACTAATAATCAACGAATCCCGGTTACCTCGATGCAAGCTGCTCTTCAGTCAACAATGATGGGAACTCAACAATGGGGTGCTTGGCCACCAGCTTATGG ] [+] EMBL CD158836 [ CTGCGTCAGCATTTCTCCCAATATGGAAGAGTATGTGATGTTTTCATACCGAAACCCTTTCGATCGTTTGCCTTCATTACGTTCGATGACCCCGAGGTCGCAGCTTCTTTGTTGGGCAAGGACCAAGAAATTCAAGGTGTTCGTATAAGCGTTGGTTCTGCAGTTCCCAAGCTCCCTCCTTCTGCTCGTCAAAGTAACACTAATAATCAACGAATCCCGGTTACCTCGATGCAAGCTGCTCTTCAGTCAACAATGATGGGAACTCAACAATGGGGTGCTTGGCCACCAGCTTATGGGGGTATGGTTCAGAATAACCGATATGGAGGCCAACATTCTTCCGGTAAAGGTGGAAGTCGAAACGGATCAATGGGGGGAATGAATC ] [+] EMBL CD158743 [ CTGCGTCAGCATTTCTCCCAATATGGAAGAGTATGTGATGTTTTCATACCGAAACCCTTTCGATCGTTTGCCTTCATTACGTTCGATGACCCCGAGGTCGCAGCTTCTTTGTTGGGCAAGGACCAAGAAATTCAAGGTGTTCGTATAAGCGTTGGTTCTGCAGTTCCCAAGCTCCCTCCTTCTGCTCGTCAAAGTAACACTAATAATCAACGAATCCCGGTTACCTCGATGCAAGCTGCTCTTCAGTCAACAATGATGGGAACTCAACAATGGGGTGCTTGGCCACCAGCTTATGGGGGTATGGTTCAGAATAACCGATATGGAGGCCAACATTCTTCCGGTAAAGGTGGAAGTCGAAACGGATCAATGGGGGGAATGAATC ] [-] EMBL CD158544 [ TGCGTCAGCATTTCTCCCAATATGGAAGAGTATGTGATGTTTTCATACCGAAACCCTTTCGATCGTTTGCCTTCATTACGTTCGATGACCCCGAGGTCGCAGCTTCTTTGTTGGGCAAGGACCAAGAAATTCAAGGTGTTCGTATAAGCGTTGGTTCTGCAGTTCCCAAGCTCCCTCCTTCTGCTCGTCAAAGTAACACTAATAATCAACGAATCCCGGTTACCTCGATGCAAGCTGCGCTTCAGTCAACAATGATGGGAACTCAACAATGGGGTGCTTGGCCACCAGCTTATGGGGGTATGGTTCAGAATAACCGATATGGAGGCCAACATTCTTCCGGTAAAGGTGGAAGTCGAAACGGATCAATGGGGGGAATGAATCC ] [-] EMBL CD141769 [ GTGATGTTTTCATACCGAAACCCTTTCGATCGTTTGCCTTCATTACGTTCGATGACCCCGAGGTCGCAGCTTCTTTGTTGGGCAAGGACCAAGAAATTCAAGGTGTTCGTATAAGCGTTGGTTCTGCAGTTCCCAAGCTCCCTCCTTCTGCTCGTCAAAGTAACACTAATAATCAACGAATCCCGGTTACCTCGATGCAAGCTGCTCTTCAGTCAACAATGATGGGAACTCAACAATGGGGTGCTTGGCCACCAGCTTATGGGGGTATGGTTCAGAATAACCGATATGGAGGCCAACATTCTTCCGGTAAAGGTGGAAGTCGAAACGGATCAATGGGGGGAATGAATCCAGCAGCTGCAGCCGCTGCTGCTGTTTTAGCAGCAGAATATACTCGTG] [-] EMBL CD193830 [ ATGACNNCGAGGTCGCAGCTTCTTGTTTGGGCAAGGACCAAGAAATTCAAGGTGTTCGTATAAGCGTTGGTTCTGCAGTTCCCAAGCTCCCTCCTTCTGCTCGTCAAAGTAACACTAATAATCAACGAATCCCGGTTAC ] [-] EMBL BG932871 [ GTCGCAGCTTCTTTGTTGGGCAAGGACCAAGAAATTCAAGGTGTTCGTGTAAGCGTTGGTTCTGCAGTTCCCAAGCTCCCTCCTTCTGCTCGTCAAAGTAACACTAATAATCAACGAATCCCGGTTACCTCGATGCAAGCTGCTCTTCAGTCAACAATGATGGGAACTCAACAATGGGGTGCTTGGCCACCAGCTTATGGGGGTATGGTTCAGAATAACCGATATGGAGGCCAACATTCTTCCGGTAAAGGTGGAAGTCGAAACG ] [-] EMBL CD195535 [ ATTCAAGGTGTTCGTATAAGCGTTGGTTCTGCAGTTCCCAAGCTCCCTCCTTCTGCTCGTCAAAGTAACACTAATAATCAACGAATCCCGGTTACC ] consensusID : consensus_11116#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 751 fasta sequence [TATGGGGGTATGGTTCAGAATAACCGATATGGAGGCCAACATTCTTCCGGTAAAGGTGGAAGTCGAAACGGATCAATGGGGGGAATGAATCCAGCAGCTGCAGCCGCTGCTGCTGTTTTAGCAGCAGAATATACTCGTGTTCATCATACCCGAAACTCAGGTACCCCAGCAAATGGGCAACCAGAATACAACGGAGTATCTGTGGATTCTTCAAATTCTGCTGCACTTGCTACGATGAATATCCTAAGTAATCCGAATGTAGTAGCCGCCATAGTTAGCGCTGCCACTGGAGCTGGCAATACTTCTATGCTTGGCAATTCTGGTGTAAGTTTGTTTGCAGATCATTCTAACGAATTGAAAACACACCAACCTAGATATACTTTCGCCAATATCGGACTGCATAATTCTCATGCACTCTAATACAATGAATGGATTCAAGTTATTCAATACTCAAATTCTGCATTTCTTACTTCCTCCTTGATTTTGGCTCCACTGAGTCTTTGTTTTGTATCACTGTTGCCCGAACTAAATGGGTTATGTCAATGTGTTGGTAAAAGAATTGGTTTTTCATTATTAAACCAACTGTGTATTTGTTTGGTTCCGTGTGTTGTGAATCGGTGGTTCTTCCAGGGTAAATGTACTTTTATTGTACGACTGTTAGTAGTGTGGTAAAAGCTTGCGTGTTTCTTTGCATACTGATATCAGTCGTGCGATGTTATCCGTGTACTTTGTATGAACGTTATGGTACATA] [-] EMBL CD121018 [TATGGGGGTATGGTTCAGAATAACCGATATGGAGGCCAACATTCTTCCGGTAAAGGTGGAAGTCGAAACGGATCAATGGGGGGAATGAATCCAGCAGCTGCAGCCGCTGCTGCTGTTTTAGCAGCAGAATATACTCGTGTTCATCATACCCGAAACTCAGGTACCCCAGCAAATGGGCAACCAGAATACAACGGAGTATCTGTGGATTCTTCAAATTCTGCTGCACTTGCTACGATGAATATCCTAAGTAATCCGAATGTAGTAGCCGCCATAGTTAGCGCTGCCACTGGAGCTGGCAATACTTCTATGCTTGGCAATTCTGGTGTAAGTTTGTTTGCAGATCATTCTAACGAATTGAAAACACACCAACCTAGATATACTTTCGCCAATATCGGACTGCATA ] [+] EMBL CD163007 [ GTATGGTTCAGAATAACCGATATGGAGGCCAACATTCTTCCGGTAAAGGTGGAAGTCGAAACGGATCAATGGGGGGAATGAATCCAGCAGCTGCAGCCGCTGCTGCTGTTTTAGCAGCAGAATATACTCGTGTTCATCATACCCGAAACTCAGGTACCCCAGCAAATGGGCAACCAGAATACAACGGAGTATCTGTGGATTCTTCAAATTCTGCTGCACTTGCTACGATGAATATCCTAAGTAATCCGAATGTAGTAGCCGCCATAGTTAGCGCTGCCACTGGAGCTGGCAATACTTCTATG ] [-] EMBL CD181104 [ TATGGTTCAGAATAACCGATATGGAGGCCAACATTCTTCCGGTAAAGGTGGAAGTCGAAACGGATCAATGGGGGGAATGAATCCAGCAGCTGCAGCCGCTGCTGCTGTTTTAGCAGCAGAATATACTCGTGTTCATCATACCCGAAACTCAGGTACCCCAGCAAATGGGCAACCAGAATACAACGGAGTATCTGTGGATTCTTCAAATTCTGCTGCACTTGCTACGATGAATATCCTAAGTAATCCGAATGTAGTAGCCGCCATAGTTAGCGCTGCCACTGGAGCTGGCAATACTTCTATGC ] [-] EMBL CD180809 [ TATGGTTCAGAATAACCGATATGGAGGCCAACATTCTTCCGGTAAAGGTGGAAGTCGAAACGGATCAATGGGGGGAATGAATCCAGCAGCTGCAGCCGCTGCTGCTGTTTTAGCAGCAGAATATACTCGTGTTCATCATACCCGAAACTCAGGTACCCCAGCAAATGGGCAACCAGAATACAACGGAGTATCTGTGGATTCTTCAAATTCTGCTGCACTTGCTACGATGAATATCCTAAGTAATCCGAATGTAGTAGCCGCCATAGTTAGCGCTGCCACTGGAGCTGGCAATACTTCTATGC ] [-] EMBL CD137025 [ CCACTGGAGCTGGCAATACTTCTATGCTTGGCAATTCTGGTGTAAGTTTGTTTGCAGATCATTCTAACGAATTGAAAACACACCAACCTAGATATACTTTCGCCAATATCGGACTGCATAATTCTCATGCACTCTAATACAATGAATGGATTCAAGTTATTCAATACTCAAATTCTGCATTTCTTACTTCCTCCTTGATTTTGGCTCCACTGAGTCTTTGTTTTGTATCACTGTTGCCCGAACTAAATGGGTTATGTCAATGTGTTGGTAAAAGAATTGGTTTTTCATTATTAAACCAACTGTGTATTTGTTTGGTTCCGTGTGTTGTGAATCGGTGGTTCTTCCAGGGTAAATGTACTTTTATTGTACGACTGTTAGTAGTGTGGTAAAAGCTTGCGTGTTTCTTTGCATACTGATATCAGTCGTGCGATGTTATCCGTGTACTTTGTATGAACGTTATGGTACATA] consensusID : consensus_11116#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 610 fasta sequence [AGCAAATGGGCAACCAGAATACAACGGAGTATCTGTGGATTCTTCAAATTCTGCTGCACTTGCTACGATGAATATCCTAAGTAATCCGAATGTAGTAGCCGCCATAGTTAGCGCTGCCACTGGAGCTGGCAATACTTCTATGCTTGGCAATTCTGGTGCACTCTAATACAATGAATGGATTCAAGTTATTCAATACTCAAATTCTGCATTTCTTACTTCCTCCTTAATTTTGGCTCCACTGAGTCTTTGTTTTGTATCACTGTTGCCCGAACTAAATGGGTTATGTCAATGTGTTGGTAAAAGAAATTGGTTTTTCTCCTTTAAACCAACTGTGTATTTGTTTGGTTCCGTGTGTTGTGAATCGGTGGTTCTTCCAGGGTAAATGTACTTTTATTGTACGACTGTTAGTAGTGTGGTAAAAGCTTGCGTGTTTCTTTGCATACTGATATCAGTCGTGCGATGTTATCCGTGTACTTTGTATGAACGTTATGGTACATAATGCTGAGATATGAGTGATCAGACTGTTTGACATATAAATTTTGGTGCTGTCGCGTTTCAGAAACCGTTGCTGTGTGGTGAAAGCATCAGAACATATGTTGATGTCTCTAAA] [-] EMBL CD077940 [AGCAAATGGGCAACCAGAATACAACGGAGTATCTGTGGATTCTTCAAATTCTGCTGCACTTGCTACGATGAATATCCTAAGTAATCCGAATGTAGTAGCCGCCATAGTTAGCGCTGCCACTGGAGCTGGCAATACTTCTATGCTTGGCAATTCTGGTGCACTCTAATACAATGAATGGATTCAAGTTATTCAATACTCAAATTCTGCATTTCTTACTTCCTCCTTAATTTTGGCTCCACTGAGTCTTTGTTTTGTATCACTGTTGCCCGAACTAAATGGGTTATGTCAATGTGTTGGTAAAAGAAATTGGTTTTTCTCCT ] [+] EMBL CD069504 [ tacTACTTCTATGCTTGGCAATTCTGGTGCACTCTAATACAATGAATGGATTCAAGTTATTCAATACTCAAATTCTGCATTTCTTACTTCCTCCTTAATTTTGGCTCCACTGAGTCTTTGTTTTGTATCACTGTTGCCCGAACTAAATGGGTTATGTCGATGTGTTGGTAAAAG AATTGGTTTTTCATTATTAAACCAACTGTGTATTTGTTTGGTTCCGTGTGTTGTGAATCGGTGGTTCTTCCAGGGTAAATGTACTTTTATTGTACGACTGTTAGTAGTGTGGTAAAAGCTTGCGTGTTTCTTTGCATACTGATATCAGTCGTGCGATGTTATCCGTGTACTTTGTATGAACGTTATGGTACATAATGCTGAGATATGAGTGATCAGACTGTTTGACATATAAATTTTGGTGCTGTCGCGTTTCAGAAACCGTTGCTGTGTGGTGAAAGCATCAGAACATATGTTGATGTCTCTAAA] consensusID : consensus_11116#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence [TGCAGATCATTCTAACGAATTGAAAACACACCAACCTAGATATACTTTCGCCAATATCGGACTGCATAATTCTCATGCAAGTACATTTCACGTTGTTAAAATTTTACTTAGGCGATAATATCTTTTTTCTATTTAAATCAGAGATGTGACTTAGTTATCAAGCACAATTTTAGATAATTAGCTTTAAAGCACACTTTATATGTCTGTACTGATGATGCTAAACCAAAGTCTTAACCTGGAACCTGTTGATCGAAAGCTGAGTGCTATAACCGTAAGTCACTACTCAGCTACCATTTAAGGATATCGTTCCATTTTCTATAGACCTGCGATTTTGAGAAACATTCATTCATAAAACAGATTTTACTTACCATTGGTATTCGTTTGTTCACTATACAGTAGGTGTAATGGAGTTTTACCACTCATTTCTGTTTTTAGCAAATGAATTCCAGTATCATGAATACTTTACTTAAATTTGACATTAATCATTACTGATTGCAACACAGGTTATTGTATAAGTGGATCAGAACTAACTACACAGATTNTTTTGTAAAATAAATAAAATACCAGAACATTCAAGTTACTAAACTT] [+] EMBL CD096655 [TGCAGATCATTCTAACGAATTGAAAACACACCAACCTAGATATACTTTCGCCAATATCGGACTGCATAATTCTCATGCAAGTACATTTCACGTTGTTAAAATTTTACTTAGGCGATAATATCTTTTTTCTATTTAAATCAGAGATGTGACTTAGTTATCAAGCACAATTTTAGATAATTAGCTTTAAAGCACACTTTATATGTCTGTACTGATGATGCTAAACCAAAGTCTTAACCTGGAACCTGTTGATCGAAAGCTGAGTGCTATAACCGTAAGTCACTACTCAGCTACCATTTAAGGATATCGTTCCATTTTCTATAGACCTGCGATTTTGAGAAACATTCATTCATAAAACAGATTTTACTTACCATTGGTATTCGTTTGTTCACTATACAGTAGGTGTAATGGAGTTTTACCACTCATTTCTGTTTTTAGCAAATGAATTCCAGTATCATGAATACTTTACTTAAATTTGACATTAATCATTACTGATTGCAACACAGGTTATTGTATAAGTGGATCAGAACTAACTACACAGATTNTTTTGTAAAATAAATAAAATACCAGAACATTCAAGTTACTAAACTT] consensusID : consensus_11116#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence [TTTTTTTTTTTTTTTNTAAAAATGAAAAACCAATTCTTTTACCAACACATTGACATAACCCATTTAGTTCGGGCAACAGTGATACAAAACAAAGACTCAGTGGAGCCAAAATTAAGGAGGAAGTAAGAAATGCAGAATTTGAGTATTGAATAACTTGAATCCATTCATTGTATTAGAGTGCATGAGAATTATGCAGTCCGATATTGGCGAAAGTATATCTAGGTTGGTGTGTTTTCAATTCGTTAGAATGATCTGCAAACAAACTTACACCAGAATTGCCAAGCATAGAAGTATTGCCAGCTCCAGTGGCAGCGCTAACTATGGCGGCTACTACATTCGGATTACTTTAAGGATATCATCCGT] [+] EMBL AI395541 [TTTTTTTTTTTTTTTNTAAAAATGAAAAACCAATTCTTTTACCAACACATTGACATAACCCATTTAGTTCGGGCAACAGTGATACAAAACAAAGACTCAGTGGAGCCAAAATTAAGGAGGAAGTAAGAAATGCAGAATTTGAGTATTGAATAACTTGAATCCATTCATTGTATTAGAGTGCATGAGAATTATGCAGTCCGATATTGGCGAAAGTATATCTAGGTTGGTGTGTTTTCAATTCGTTAGAATGATCTGCAAACAAACTTACACCAGAATTGCCAAGCATAGAAGTATTGCCAGCTCCAGTGGCAGCGCTAACTATGGCGGCTACTACATTCGGATTACTTTAAGGATATCATCCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11116#1 ------------------------------------------TATGGGGGTATGGTTCAG 18 consensus_11116#2 ------------------------------------------------------------ consensus_11116#0 CGTTTCAGTTTCGGTTGGGGTGAGGATGCAGTTAACAAGATATGTTAAGATATGTGAGAC 60 consensus_11116#3 ------------------------------------------------------------ consensus_11116#4 ------------------------------------------------------------ consensus_11116#1 AATAACCGATATGGAGGCCAACATTCTTCCGGTAAA-GGTGGAAGTCGAAACGGATCAAT 77 consensus_11116#2 ------------------------------------------------------------ consensus_11116#0 TGAGGATGACCAGCCAATCGAGGTGCCTCTGGAAGACGATGACACTCTTTTACTATCAAC 120 consensus_11116#3 ------------------------------------------------------------ consensus_11116#4 ------------------------------------------------------------ consensus_11116#1 GGGGGGAA-TGAATCCAGCAGCTGCA---GCCGCTGCTGCTGTTTTAGCAGCAGAA---- 129 consensus_11116#2 ------------------------------------------------------------ consensus_11116#0 ATTAACTGCTCAGTTCCCAGATTGCACGGGACTTAAGTACAGGTCTGGCGACTCAGGGTG 180 consensus_11116#3 ------------------------------------------------------TGCAGA 6 consensus_11116#4 ------------------------------------------------------------ consensus_11116#1 -TATACTCGTGTTCATCATACCCGAAAC---TCAGGTACCCCAGCAAAT---GGGCAACC 182 consensus_11116#2 ------------------------------------------AGCAAAT---GGGCAACC 15 consensus_11116#0 CTATCGTGGTGTTCGTCTTTTGGATGACCGTTTATTTCCTCCCACTGAT---GGACAATG 237 consensus_11116#3 TCATTCTAACGAATTGAAAACACACCAACCTAGATATACTTTCGCCAATATCGGACTGCA 66 consensus_11116#4 ------------------------------------------------------------ consensus_11116#1 AGAATACAACGGA-GTAT-CTGTGGATTCTTCAAATTCTGCTGCACTTGCTACGATGAAT 240 consensus_11116#2 AGAATACAACGGA-GTAT-CTGTGGATTCTTCAAATTCTGCTGCACTTGCTACGATGAAT 73 consensus_11116#0 GCATGGAAACACT-TTTTGTTGTGTCTTTCCAAAATGTTCCAAGAGGAAAGCAGATGAAG 296 consensus_11116#3 TAATTCTCATGCAAGTACATTTCACGTTGTTAAAATTTTACT-TAGGCGATAATATCTTT 125 consensus_11116#4 ------------------------------------------------------------ consensus_11116#1 ATCCTAAGTAA-TCCGAA-TGTAGT--AGCCGCCATAGTTAGCGCTGCCAC-TGGAGCTG 295 consensus_11116#2 ATCCTAAGTAA-TCCGAA-TGTAGT--AGCCGCCATAGTTAGCGCTGCCAC-TGGAGCTG 128 consensus_11116#0 ACTCGTTAGAT-TCCAAAATGAAGCTAAAACGTTTTGATAAAAAAACATGTACGGACTTG 355 consensus_11116#3 TTTCTATTTAAATCAGAGATGTGACTTAGTTATCAAGCACAATTTTAGATAATTAGCTTT 185 consensus_11116#4 ------------------------------------------------------------ consensus_11116#1 GCAATACTT--CTATGCTTGGCAATTCTGGTGTAAGTTTGTTTGCAGATCATTCTAACGA 353 consensus_11116#2 GCAATACTT--CTATGCTTGGCAATTCTGGTG---------------------------- 158 consensus_11116#0 ATAGTGTTAAACTAGCCTTGGCGGC-CAGATGAAGATACTTTACGTGACTACTTTAGCCA 414 consensus_11116#3 AAAGCACAC---TTTATATGTCTGTACTGATGA-----TGCTAAACCAAAGTCTTAACC- 236 consensus_11116#4 ------------------------------------------------------------ consensus_11116#1 ATTGAAAACACACCAACCTAGATATACTTTCGCCAATATCGGACTGCATAATTCTCATGC 413 consensus_11116#2 -----------------------------------------------------------C 159 consensus_11116#0 GT-------ACGGCGACCTTGTCATGATCCAGATCAAACGAGACCCAGTAA--CCCAGCA 465 consensus_11116#3 --------------------------------------TGGAACCTGTTGA----TCGAA 254 consensus_11116#4 ------------------------------------------------------TTTTTT 6 consensus_11116#1 ACTCTAATACAATGAATGGAT--TCAAGTTATTCAATA-----CTCAAATTCTGCATTTC 466 consensus_11116#2 ACTCTAATACAATGAATGGAT--TCAAGTTATTCAATA-----CTCAAATTCTGCATTTC 212 consensus_11116#0 AAGCAAGGGATATGGATTTAT--CCGCTTCGCTGATTATACGGCACAAGTTATGTGTTTG 523 consensus_11116#3 AGCTGAGTGCTATAACCGTA------AGTCACTACTCA---GCTACCATTTAAGGATATC 305 consensus_11116#4 TTTTTTTTTNTAAAAATGAAAAACCAATTCTTTTACCAACACATTGACATAACCCATTTA 66 * * * * * * * * consensus_11116#1 TT------ACTTCCTCCTTGATTTTGGCTCCACTGAGTCTTTGTTT-TGTATCACTGTTG 519 consensus_11116#2 TT------ACTTCCTCCTTAATTTTGGCTCCACTGAGTCTTTGTTT-TGTATCACTGTTG 265 consensus_11116#0 GCTGAACGACATACCATTGAAAATCGACAGTGCGATGTCCGCATTCCTATATCAAAGATG 583 consensus_11116#3 GTT---CCATTTTCTATAGACCTGCGATTTTGAGAAACATTCATTCATAAAACAGATTTT 362 consensus_11116#4 GTT------CGGGCAACAGTGATACAAAACAAAGACTCAGTGGAGCCAAAATTAAGGAGG 120 * * * consensus_11116#1 CC---CGAACTAAATGGGTTATGTCAATGTGTTGGTAAAAGAA-TTGGTTTTTCATTATT 575 consensus_11116#2 CC---CGAACTAAATGGGTTATGTCAATGTGTTGGTAAAAGAAATTGGTTTTTCTCCTTT 322 consensus_11116#0 GAGGGTGACCGTCAAGAAGTTTCCCGAAAGGTTCACATTGGAAGGTTAACAGAAGATATT 643 consensus_11116#3 ACTTACCATTGGTATTCGTTTGTTCACTATACAGTAGGTGTAA--TGGAGTTTTACCACT 420 consensus_11116#4 AAGTAAGAAATGCA-GAATTTGAGTATTGAATAACTTGAATCCATTCATTGTATTAGAGT 179 * * * * * consensus_11116#1 AAACC---AACTGTGTA-TT-TGTTTGGTTCCGTGTGTTGT-GAATCGGTGGTTCTTCCA 629 consensus_11116#2 AAACC---AACTGTGTA-TT-TGTTTGGTTCCGTGTGTTGT-GAATCGGTGGTTCTTCCA 376 consensus_11116#0 AGTCCCGAAGCTCTGCG-TC-AGCATTTCTCCCAATATGGAAGAGTATGTGATGTTTTCA 701 consensus_11116#3 CATTT-----CTGTTTT-TAGCAAATGAATTCCAGTATCAT-GAATACTT--TACTTAAA 471 consensus_11116#4 GCATGAG-AATTATGCAGTCCGATATTGGCGAAAGTATATCTAGGTTGGTGTGTTTTCAA 238 * * * * * * * * ** * consensus_11116#1 GGGTAAATGTACTTTTATTGTACGACTGTTAGTA-GTGTGGTAA----AAGCTTGCGTGT 684 consensus_11116#2 GGGTAAATGTACTTTTATTGTACGACTGTTAGTA-GTGTGGTAA----AAGCTTGCGTGT 431 consensus_11116#0 TACCGAAACCCTTTCGATCGTTTGCCT-TCATTACGTTCGATGACCCCGAGGTCGCAGCT 760 consensus_11116#3 TTTGACATTAATCATTACTGATTGCAACACAGGTTATTGTATAAG---TGGATCAGAACT 528 consensus_11116#4 TTCGTTAGAATGATCTGCAAACAAACTTACACCAGAATTGCCAAGCATAGAAGTATTGCC 298 * * * consensus_11116#1 TTCTTTGCATACTGATATCAGTCGTGCGA-TGTTATCCGTGTAC---TTTGTATGAACGT 740 consensus_11116#2 TTCTTTGCATACTGATATCAGTCGTGCGA-TGTTATCCGTGTAC---TTTGTATGAACGT 487 consensus_11116#0 TCTTTGTTGGGCAAGGACCAAGAAATTCA-AGGTGTTCGTATAAGCGTTGGTTCTGCAGT 819 consensus_11116#3 AACTACACAGATTNTT-TTGTAAAATAAA-TAAAATACCAGAAC--------ATTCAAGT 578 consensus_11116#4 AGCTCCAGTGGCAGCGCTAACTATGGCGGCTACTACATTCGGAT-----TACTTTAAGGA 353 * * * consensus_11116#1 TATGGTACATA------------------------------------------------- 751 consensus_11116#2 TATGGTACATAATGCTGAGATATGAGTGATCAGACTGTTTGACATATAAATTTTGGTGCT 547 consensus_11116#0 TCCCAAGCTCCCTCCTTCTGCTCGTCAAAGTAACACTAATAATCAACGAATCCCGGTTAC 879 consensus_11116#3 TACTAAACTT-------------------------------------------------- 588 consensus_11116#4 TATCATCCGT-------------------------------------------------- 363 * * consensus_11116#1 ------------------------------------------------------------ consensus_11116#2 GTCGCGTTTCAGAAACCGTTGCTGTGTGGTGAAAGCATCAGAACATATGTTGATGTCTCT 607 consensus_11116#0 CTCGATGCAAGCTGCTCTTCAGTCAACAATGATGGGAACTCAACAATGGGGTGCTTGGCC 939 consensus_11116#3 ------------------------------------------------------------ consensus_11116#4 ------------------------------------------------------------ consensus_11116#1 ------------------------------------------------------------ consensus_11116#2 AAA--------------------------------------------------------- 610 consensus_11116#0 ACCAGCTTATGGGGGTATGGTTCAGAATAACCGATATGGAGGCCAACATTCTTCCGGTAA 999 consensus_11116#3 ------------------------------------------------------------ consensus_11116#4 ------------------------------------------------------------ consensus_11116#1 ------------------------------------------------------------ consensus_11116#2 ------------------------------------------------------------ consensus_11116#0 AGGTGGAAGTCGAAACGGATCAATGGGGGGAATGAATCCAGCAGCTGCAGCCGCTGCTGC 1059 consensus_11116#3 ------------------------------------------------------------ consensus_11116#4 ------------------------------------------------------------ consensus_11116#1 -------------------------- consensus_11116#2 -------------------------- consensus_11116#0 TGTTTTAGCAGCAGAATATACTCGTG 1085 consensus_11116#3 -------------------------- consensus_11116#4 -------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||