These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11121#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 566 fasta sequence [GAACGG-TTGTTACCACGA-GGATGAA-GTTAGAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACTTCATAAACAAAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGGCTAAACGCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAGCCATACGGTAAGTTGGTTTTTTTATAAATCCAACATTAATATAGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCANAAGGCTGCTCCTAGAGTTGGTGGAAAGCGTTAATACATATGTGACATGCTTATTTTGTGGAATAAATT] [+] EMBL CD163122 [GAACGGATTGTTACCACGATGTATAAACCTTTGAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACTTCATAAACAAAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACACGAAAGGCATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAA ] [+] EMBL CD078986 [ CGA GGATGAA GTTAGAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACTTCATAAACAAAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGGCTAAACGCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAGCCATACGGTAAGTTGGTTTTTTTATAAATCCAACATTAATATAGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCANAAGGCTGCTCCTAGAGTTGGTGGAAAGCGTTAATACATATGTGACATGCTTATTTTGTGGAATAAAT ] [-] EMBL CD073437 [ GA GGATGAA GTTAGAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACTTCATAAACAAAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGGCTAAACGCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAGCCATACGGTAAGTTGGTTTTTTTATAAATCCAACATTAATATAGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCAAAAGGCTGCTCCTAGAGTTGGTGGAAAGCGTTAATACATATGTGACATGCTTATTTTGTGGAATAAATT] consensusID : consensus_11121#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 31 consensus length = 552 fasta sequence [CCACTCACTACTAGAGCGGTTGTTACCACGAGGATGAAG-TT-A-GAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT-TCATA-AACA-AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG-CTAAAC-GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG-CCATACGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCAAAAGGCTGCTCCTAGGGTTGGTGGAAACGTAATACTATGTGACATGCTATTTGTGGATAATTTTCTTGTAAAAAAAAAA] [+] EMBL CD118505 [CCACTCACTACTAGAGCGGTTGTTACCACGAGGATGAAG TT A GAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCATAAAGCGATGCGTGACCAAG CCATACGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCC AGTAGCTCCTTCAAAAC NAAAGCTACCAAGATTACTCAAAAG ] [+] EMBL CD098465 [ CTATAGCGGTTGTTACCACGAGGATGAAGATTCA GAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGAGTGTTAATACCCTT GACG AAAAATGTGAACGGTCCCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGTGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTNAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCA ] [+] EMBL CD098479 [ AGCGGTTGTTACCACGAGGATGAAG TTCA GAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGAGTGTTACT TCATA GACG AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCA ] [+] EMBL CD165390 [ AGCGGTTGTTACCACGAGGATGAAG TT A GAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGCGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGTGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTANAGCGATGCGTGACCAAGCCCATACGTGCAGCT AAGAAAAAC ANAGC AAAAGAAATGGA ] [+] EMBL CD111085 [ AGCGGTTGTTACCACGAGGATGAAG TT A GAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGAGTTTTACT TCATA AACAGAAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTCAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCA ] [+] EMBL CD181135 [ GCGGTTGTTACCACGAGGATGAAG TT A GAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCAAAAGGCT ] [+] EMBL CD159346 [ GCGGTTGTTACCACGAGGATGAAG TT A GAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAGAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGC ] [+] EMBL CD148721 [ GCGGTTGTTACCACGAGGATGAAG TT A GAAGTGTGCTCTTACAGTGGTTCTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCA ] [+] EMBL CD148661 [ GCGGTTGTTACCACGAGGATGAAG TT A GAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCA ] [+] EMBL CD185240 [ cCGGTTGTTACCACGAGGATGAAG TT A GAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAGAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGCTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTAAAGAAAAACAAAAGCAA ] [+] EMBL CD098427 [ GGTTGTTACCACGAGGATGAAG TT A GAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTNAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCn ] [+] EMBL CD163098 [ GGTTGTTACCACGAGGATGAAG TT ATGAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTNAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCATAAG ] [+] EMBL CD163257 [ GGTTGTTACCACGAGGATGAAG TT ATGAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCAAAAG ] [+] EMBL CD110872 [ GGTTGTTACCACGAGGATGAAG TT A GAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCCCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTNAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCA ] [+] EMBL CD163538 [ GTTGTTACCACGAGGATGAAG TT A GAAGTGTGCTCTTACAGTGG TTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACACAA ] [-] EMBL CD111224 [ GTTGTTACCACGAGGATGAAG TT A GAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGA TACTCAA ] [+] EMBL CD202303 [ GTTGTTACCACGAGGATGAAG TT A GAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGTTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAG ] [+] EMBL CD163422 [ GTTGTTACCACGAGGATGAAG TT A GAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGAC ] [-] EMBL CD111242 [ A GAAGTGTGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATATCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGACGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGA TACTCAA ] [+] EMBL CD153875 [ GCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCAAAAGGCTGCTCCTAGGGTTGGTGGAAA ] [+] EMBL SMAA33971 [ TACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGTATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGAGAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTACCCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTAAAG AAAAC AAAGC AAAAG AATGGAG AAAAGGTG AG AGGTCG AAAG AAAAGCCC AGTAGCT CTTC AAAC AAAAGCTA CAAGATTACTC AAGGCTGCT CTAGAG TGGTGGAAGCGTAATACTATGTGACATGCTATTTGTGGATAATTTTCTTGTAAAAAAAAAA] [+] EMBL CD192483 [ CGCGCTATCCGCATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAGGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAG ] [+] EMBL CD139246 [ gcgGCTATCCGTATCGATGGTCGTGGGTTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGGACTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG TCATACGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAA ] [+] EMBL CD111100 [ ATGGTCGTGAGTGGGAAT ACCTATGACG AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTTAACGGCAATC AAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG C ] [+] EMBL CD131200 [ TTTTACT TCATA AACA AAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTNAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAGAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCT ] [-] EMBL CD111305 [ GAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTANACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCAA ] [+] EMBL CD180785 [ TCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTAAGGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCAAAAGGCT ] [+] EMBL CD136335 [ ACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAA ] [+] EMBL CD131487 [ AAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCGGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTAAAGAAAAACAAAAGCAA ] [-] EMBL CD143041 [ CAAAAAAGGGATAAGTGAAGAGCTGGTAAAAAAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCAAAAGGCTG ] [+] EMBL CD110851 [ TCGAGGTATTGCAGGAGCAAGTCTGGCTGAAATCATGG CTAAAC GCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAG CCATACGTGCAGCTAAAGAAAAACAAAAGCAAAAAGAAATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTCCTTCAAAACAAAAAGCTACCAAGATTACTCA ] consensusID : consensus_11121#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence [CACGTATGGCTTGGTCACGCATCGCTTTACGAACTTCTGGCTTTTGATTGCGTTTAGCCATGATTTCAGCCAGACTTGCTCCTGCAATACCTCGAGCACTCTTGGTTACACGTTTAGTTCGCTTTTTACCAGCTCTTCACTTATCCCTTTTTCTCCATTTCTTTTTGCTTTTGTTTTTCTTTAGCTGCACGTATGGCTTGGTCACGCATCGCTTTACGAACTTCTGGCTTTTGATTGCGTTTAGCCATGATTTCAGCCAGACTTGCTCCTGCAATACCTCGAGCACTCTTGGTTACACGCTTAGTTCGCTTTTTTACCAGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACTTCATAAACAAAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCG] [+] EMBL CD133853 [CACGTATGGCTTGGTCACGCATCGCTTTACGAACTTCTGGCTTTTGATTGCGTTTAGCCATGATTTCAGCCAGACTTGCTCCTGCAATACCTCGAGCACTCTTGGTTACACGTTTAGTTCGCTTTTTACCAGCTCTTCACTTATCCCTTTTTCTCCATTTCTTTTTGCTTTTGTTTTTCTTTAGCTGCACGTATGGCTTGGTCACGCATCGCTTTACGAACTTCTGGCTTTTGATTGCGTTTAGCCATGATTTCAGCCAGACTTGCTCCTGCAATACCTCGAGCACTCTTGGTTACACGCTTAGTTCGCTTTTTTACCAGCTCTTACAGTGGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTTTACTTCATAAACAAAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGGTGCTCTACCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11121#0 -------------GAACGGTTGTTACCACGAGGATGAAGTTAGAAGTGTGCTCTTACAGT 47 consensus_11121#1 CCACTCACTACTAGAGCGGTTGTTACCACGAGGATGAAGTTAGAAGTGTGCTCTTACAGT 60 consensus_11121#2 ----------CACGTATGGCT-TGGTCACGCATCGCTTTACGAACTTCTGGCTTTTGATT 49 * ** * * **** * * ** ** * * consensus_11121#0 GGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTT 107 consensus_11121#1 GGTTTTAAAGTTTATCCGGGACATGGAAAACGCGCTATCCGCATCGATGGTCGTGGGTTT 120 consensus_11121#2 GCGTTTAGCCATGATTTCAGCCA-GACTTGCTCCTGCAATACCTCGAGCACTCTTGGTTA 108 * **** * ** * ** * * * * **** * **** consensus_11121#0 TACTTCATAAACAAAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATC 167 consensus_11121#1 TACTTCATAAACAAAAAATGTGAACGGTCTCATTTCTTAAAGCGTAATCCGCGTGAAATC 180 consensus_11121#2 CACGTTTAGTTCGC----TTTTTACCAGCTCTTCACTTATCCCTTTTTCTCCATT---TC 161 ** * * * * ** *** * **** * * ** * * ** consensus_11121#0 AGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAA 227 consensus_11121#1 AGCTGGACGGTGCTCTACCGAAGGAAGTACAAAAAAGGGATAAGTGAAGAGCTGGTAAAA 240 consensus_11121#2 TTTTTGCTTTTGTTTTTCTTTAGC---TGCACGTATGGCTTG-GTCACGCATCGCTTTAC 217 * * ** * * * ** * ** * ** * ** * * * * * consensus_11121#0 AAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAA 287 consensus_11121#1 AAGCGAACTAAACGTGTAACCAAGAGTGCTCGAGGTATTGCAGGAGCAAGTCTGGCTGAA 300 consensus_11121#2 GAAC--TTCTGGCTTTTGATTGCGTTTAGCCATGATTTC-----AGCCAGACTTGCTCCT 270 * * * * * * * * * * * * *** ** ** *** consensus_11121#0 ATCATGGCTAAACGCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAGCCATA 347 consensus_11121#1 ATCATGGCTAAACGCAATCAAAAGCCAGAAGTTCGTAAAGCGATGCGTGACCAAGCCATA 360 consensus_11121#2 GCAATACCTCGA-GCACTCTTG-GTTACACGCT--TAGTTCGCTTTTTTACCAGCTCTTA 326 ** ** * *** ** * * * * * ** ** * * **** * ** consensus_11121#0 CGGTAAGTTGGTTTTTTTATAAATCCAACATTAATATAGTGCAGCTAAAGAAAAACAAAA 407 consensus_11121#1 CG-------------------------------------TGCAGCTAAAGAAAAACAAAA 383 consensus_11121#2 CAGTGGTTT-------------------------TAAAGTTTATCCGGGACATGGAAAAC 361 * * * * * *** consensus_11121#0 GCAAAAAGAA-ATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTC 466 consensus_11121#1 GCAAAAAGAA-ATGGAGAAAAAGGTGAAGAAGGTCGAAAAGAAAAAGCCCCAAGTAGCTC 442 consensus_11121#2 GCGCTATCCGCATCGATGGTCGTGGGTTTTACTTCATAAACAAAAAATGTGAACGGTCTC 421 ** * ** ** * * * ** *** ***** ** *** consensus_11121#0 CTTC---AAAACAAAAAGCTACCAAGATTACTCANAAGGCTGCTCCTAGAGTTGGTGGAA 523 consensus_11121#1 CTTC---AAAACAAAAAGCTACCAAGATTACTCAAAAGGCTGCTCCTAGGGTTGGTGGAA 499 consensus_11121#2 ATTTCTTAAAGCGTAATCCGCGTGAAATCAGCTGGACGG-TGCTCTACCG---------- 470 ** *** * ** * * ** * * ** ***** consensus_11121#0 AGCGTTAATACATATGTGACATGCTTATTTTGTGGAATAAATT------------- 566 consensus_11121#1 A-CGT-AATAC-TATGTGACATGCTATTTGTGGATAATTTTCTTGTAAAAAAAAAA 552 consensus_11121#2 -------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||