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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11123#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 32 consensus length = 721 fasta sequence
[CAGCCAANAATTTGGCACGAGGGTCTTCGGCGGGCTTATTTTCGCAGTCGCTATTCTTTTGTCTGGGGTATTTATTGTCTGGAAATTGTATAACAAGTCAACTAAGAAAGGTGGACAGCGCCCCCACGTACATGCAGCTGCTGCTGGCAGAGTGCGTCGCCGCGTTGGAAATGTAGGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCTTCAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCC-AAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATT-GAAAAACGCAAGAAAGCAGAAGAAGCAGAAGAAAAAGCTGCAGCCGCGGCAGCTGCTGCTGAGGCTAAACGTCGTGAAGAAGAAGCAGCTCGTGAACAAGCTGAATACGAGCGCTTAAAACAAGAGTTTAGTATTG-AAGAAGAGGGATTAGATGCACAACAACAAGATGAC-AAAGCAAAAGCATTAATTAATGCACAAATTATTGCAGCTATTGAAGAAGCAAAAATCATTCCAGTCGAACATTTGGCAATCAATTTAAATTTGAAAACAGAGGTTTGTATAGAAAACATCAAAGCA]
[+] EMBL CD079578 [CAGCCAANAATTTGGCACGAGGGTCTTCGGCGGGCTTATTTTCGCAGTCGCTATTCTTTTGTCTGGGGTATTTATTGTCTGGAAATTGTATAACAAGTCAACTAAGAAAGGTGGACAGCGCCCCCACGTACATGCAGCTGCTGCTGGCAGAGTGCGTCGCCGCGTTGGAAATGTAGGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCTTCAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCC AAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATT GAAAAACGCAAGAAAGCAGAAGAAGCAGAAGAAAAAGCTGCAGCCGCGGCAGCTGCTGCTGAGGCTAAACGTCGTGAAGAAGAAGCAGCTCGTGAACAAGCTGAATACGAGCGCTTAAAACAAGAGTTTAGTATTG AAGAAGAGGGATTAGATGCACAACAACAAGATGAC AAAGCANAAGCATTAATTAATGCACAAATTATTGCAGCTATTGAAGAAGCAAAAATCATTCCAGTCGAACATTTGGCAATCAATTTAAATTTGAAAACAGAGGTTTGTATAGAAAACATCAAAGCA]
[+] EMBL CD148963 [ GCTGCTGGCAGAGTGCGTCGCCGCGTTGGAAATGTAGGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCTTCAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCC AAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATT GAAAAACGCAAGAAAGCA ]
[+] EMBL CD114790 [ GCTGGCAGAGTGCGTCGCCGCGTTGGAAATGTAGGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCTTCAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCC AAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATT GAAAAACGCAAGAAAGCAGAAGAAGCAGAAGAAAAAGCTGCAGCCGCGGCAGCTGCTGCTGAGGCTAAACGTCGTGAAGAAGAAGCAGCTCGTGAACAAGCTGAATACGAGCGCTTAAAACAAGAGTTTAGTATTG AAGAA ]
[+] EMBL CD114778 [ GCTGGCAGAGTGCGTCGCCGCGTTGGAAATGTAGGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCTTCAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCC AAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATT GAAAAACGCAAGAAAGCAGAAGAAGCAGAAGAAAAGGCTGCAGCCGCGGCAGCTGCTGCTGAGGCTAAACGTCGTGAAGAAGAAGCAGCTCGTGAACAAGCTGAATACGAGCGCTTAAAACAAGAGTTTAGTATTG AAGAA ]
[+] EMBL CD114828 [ GCTGGCAGAGTGCGTCGCCGCGTTGGAAATGTAGGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCTTCAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCC AAAAAAGCTGCCAAGTTGGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATT GAAAAACGCAAGAAAGCAGAAGAAGCAGAAGAAAAAGCTGCAGCCGCGGCAGCTGCTGCTGAGGCTAAACGTCGTGAAGAAGAAGCAGCTCGTGAACAAGCTGAATACGAGCGCTTAAAACAAGAGTTTAGTATTG AAGAAGAGGGATTAGATGCACAACAACAAGATGAC AAAGCAAA ]
[+] EMBL CD114762 [ GCTGGCAGAGTGCGTCGCTGCGTTGGAAATGTAGGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCTTCAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCC AAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGGACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATT GAAAAACGCAAGAAAGCAGAAGAAGCAGAAGAAAAAGCTGCAGCCGCGGCAGCTGCTGCTGAGGCTAAACGTCGTGAAGAAGAAGCAGCTCGTGAACAAGCTGAATACGAGCGCTTAAAACAAGAGTTTAGTATTG AAGAA ]
[+] EMBL CD114720 [ GCTGGCAGAGTGCGTCGCCGCGTTGGAAGTGTAGGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCTTCAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCC AAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATT GAAAAACGCAAGAAAGCAGAAGAAGCAGAAGAAAAAGCTGCAGCCGCGGCAGCTGCTGCTGAGGCTAAACGTCGTGAAGAAGAAGCAGCTCGTGAACAAGCTGAATACGAGCGCTTAAAACAAGAGTTTAGTATTG AAGAA ]
[+] EMBL CD114780 [ GCTGGCAGAGTGCGTCGCCGCGTTGGAAATGTAGGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCTTCAGATGCAGACCAATCGAAAGAAAGTTCAAAGAAAGTTGGCTCC AAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATT GAAAAACGCAAGAAAGCAGAAGAAGCAGAAGAAAAAGCTGCAGCCGCGGCAGCTGCTGCTGAGGCTAAACGTCGTGAAGAAGAAGCAGCTCGTGAACAAGCTGAATACGAGCGCTTAAAACAAGAGTTTAGTATTG AAGAA ]
[+] EMBL CD114764 [ GCTGGCAGAGTGCGTCGCTGCGTTGGAAATGTAGGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCTTCAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCC AAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATT GAAAAACGCAAGAAAGCAGAAGAAGCAGAAGAAAAAGCTGCAGCCGCGGCAGCTGCTGCTGAGGCTAAACGTCGTGAAGAAGAAGCAGCTCGTGAACAAGCTGAATACGAGCGCTTAAAACAAGAGTTTAGTATTGAAAGAAG ]
[-] EMBL CD071909 [ CTGGCAGAGTGCGTCGCCGCGTTGGAAATGTAGGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCTTCAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCC AAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACATTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATT GAAAAACGCAAGAAAGCAGAAGAAGCAGAAGAAAAAGCTGCAGCCGCGGCAGCTGCTGCTGAGGCTAAACGTCGTGAAGAAGAAGCAGCTCGTGAACAAGCTGAATACGAGCGCTTAAAACAAGAGTTTAGTATTG AAGAAGAGGGATT ]
[-] EMBL CD071968 [ CTGGCAGAGTGCGTCGCCGCGTTGGAAATGTAGGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCTTCAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCC AAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATT GAAAAACGCAAGAAAGCAGAAGAAGCAGAAGAAAAAGCTGCAGCCGCGGCAGCTGCTGCTGAGGCTAAACGTCGTGAAGAAGAAGCAGCTCGTGAACAAGCTGAATACGAGCGCTTAAAACAAGAGTTTAGTATTG AAGAAGAGGGATT ]
[-] EMBL CD071953 [ CTGGCAGAGTGCGTCGCCGCGTTGGAAATGTAGGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCTTCAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCC AAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAGATT GAAAAACGCAAGAAAGCAGAAGAAGCAGAAGAAAAAGCTGCAGCCGCGGCAGCTGCTGCTGAGGCTAAACGTCGTGAAGAAGAAGCAGCTCGTGAACAAGCTGAATACGAGCGCTTAAAACAAGAG TTAGTATTG AAGAAGAGGGATT ]
[-] EMBL CD144851 [ CTGGCAGAGTGCGTCGCCGCGTTGGAAATGTAGGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCTTCAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCC AAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATT GAAAAACGCAAGAAAGCAGAAGAAGCAGAAGAAAAAGCTGCAGCCGCGGCAGCTGCTGCTGAGGCTAAACGTCGTGAAGAAGAAGCAGCTCGTGAACAAGCTGAATACGAGCGCTTAAAACAAGAGTTTAGTATTG AAGAAG ]
[-] EMBL CD114665 [ CTGGCAGAGTGCGTCGCCGCGTTGGAAATGTAGGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCTTCAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCC TAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATT GAAAAACGCAAGAAAGCAGAAGAAGCAGGAGAAAAAGCTGCAGCCGCGGCAGCTGCTGCTGAGGCTAAACGTCGTGAAGAAGAAGCAGCTCGTGAACAAGCTGAATACGAGCGCTTAAAACAAGAGTTTAGTATTG AAGAAG ]
[-] EMBL CD144896 [ CTGACAGAGCGCGTCGCCGCGTGGGAAATGTAGGTGGACAGCGCGGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCTTCAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCT AAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATT GAAAAACGCAAGAAAGCAGAGGAAGCAGAAGAAAAAGCTGCAGCCGCGGCAGCTGCTGCTGAGGCTAAACGTCGTGAAGAAGAAGCAGCTCGTGAACAAGCTGAATACGAGCGCTTAAAACAAGAGTTTAGTATTG AAGAAG ]
[-] EMBL CD114667 [ CTGGCAGAGTGCGTCGCCGCGTTGGAAATGTAGGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCTGGCCTTCAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCC AAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATT GAAAAACGCAAGAAAGCAGGAGAAGCAGAAGAAAAAGCTGCAGCCGCGGCAGCTGCTGCTGAGGCTAAACGTCGTGAAGAAGAAGCAGCTCGTGAACAAGCTGAATACGAGCGCTTAAAACAAGAGTTTAGTATTG AAGAAG ]
[-] EMBL CD114672 [ CTGGCAGAGTGCGTCGCTGCGTTGGAAATGTAGGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCTTCAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCC AAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATT GAAAAACGCAAGAATGCAGAAGAAGCAGAAGAAAAAGCTGCAGCCGCGGCAGCTGCTGCTGAGGCTAAACGTCGTGAAGAAGAAGCAGCTCGTGAACAAGCTGAATACGAGCGCTTAAAACAAGAGTTTAGTATTG AAGAAG ]
[-] EMBL CD144849 [ CTGGCAGAGTGCGTCGCCGCGTTGGAAATGTAGGTGGACAGCGCCGTATGACTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCTTCAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCC AAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATT GAAAAACGCAAGAAAGCAGAAGAAGCAGAAGAAAAAGCTGCAGCCGCGGCAGCTGCTGCTGAGGCTAAACGTCGTGAAGAAGAAGCAGCTCGTGAACAAGCTGAATACGAGCGCTTAAAACAAGAGTTTAGTATTG AAGAAG ]
[-] EMBL CD144871 [ cgGGCAGAGTGCGTCGCCGCGTGGGAAATGTAGGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCTTCAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCC AAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAGTT GAAAAACGCAAGAAAGCAGAAGAAGCAGAAGAAAAAGCTGCAGCCGCGGCAGCTGCTGCTGAGGCTAAACGTCGTGAAGAAGAAGCAGCTCGTGAACAAGCTGAATACGAGCGCTTAAAACAAGAGTTTAGTATTG AAGAAG ]
[+] EMBL CD138957 [ GCGTCGCCGCGTTGGAAATGTAGGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCTTCAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCC AAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATT GAAAAACGCAAGAAAGCAGAAGAAGCAGAAGAAAAAGCTGCAGCCGCGGCAGCTGCTGCTGAGGCTAAACGTCGTGAAGAAGAAGCAGCTCGTGAACAAGCTGAATACGAGCGCTTAACACAAGAGTTTAGTATTG AAGAAGAGGGATTAGATGCACAACAACCAGATGACAAAAGC AAAGCATTAATTAATGC ]
[+] EMBL CD125538 [ GCGTCGCCGCGTTGGAAATGTAGGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCTTCAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCC AAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAGAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATT GAAAAACGCAAGAAAGCAGAAGAAGCAGAAGAAAAAGCTGCAGCCGCGGCAGCTGCTGCTGAGGCTAAACGTCGTGAAGAAGAAGCAGCTCGTGAACAAGCTGAATACGAGCGCTTAAAACAAGAGTTTAGTATTG AAGAAGAGGGATTAGATGCACAACAACAAGATGAC AAAGCAAAAGCATTAATTAATGC ]
[+] EMBL CD182799 [ GCGTCGCCGCGTTGGAAATGTAGGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCTTCAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCC AAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATTNGAAAAc ]
[+] EMBL CD164774 [ GCGTCGCCGCGTTGGAAATGTAGGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCTTCAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCC AAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAAC ]
[+] EMBL CD125531 [ GCGTCGCCGCGTTGGAAATGTAGGTGGACAGCGCCGTACGGCTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCTTCAGATGCGGACCAATCAAAGGAAAGTTCAAAGAAAGTTGGCTCC AAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATT GAAAAACGCAAGAAAGCAGAAGAAGCAGAAGAAAAAGCTGCAGCCGCGGCAGCTGCTGCTGAGGCTAAACGTCGTGAAGAAGAAGCAGCTCGTGAACAAGCTGAATACGAGCGCTTAAAACAAGAGTTTAGTATTG AAGAAGAGGGATTAGATGCACAACAACAAGATGAC AAAGCANAAGCATTAATTAATGCACAAATTA ]
[+] EMBL CD182867 [ GCGTCGCCGCGTTGGAAATGTAGGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCTTCAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCC AAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATT GAAAAACGCAAGAAAGCAGAAGAAGCAGAAGAAAAAGCTGCAGCCGCG ]
[-] EMBL CD186665 [ TCGCCGCGTTGGAAATGTAGGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCTTCAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCC AAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATT GAAAAAC ]
[-] EMBL CD144894 [ CGCCGCGTTGGAAATGTAGGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCTTCAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCC AAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATT GAAAAACGCAAGAAAGCAGAAGAAGCAGAAGAAAAAGCTGCAGCCGCGGCAGCTGCTGCTGAGGCTAAACGTCGTGAAGAAGAAGCAGCTCGTGAACAAGCTGAATACGAGCGCTTAAAACAAGAGTTTAGTATTG AAGAAG ]
[-] EMBL CD144874 [ TTGGAAATGTAGGTGGACAGCGCCGTATGGCTGCTCGGATGGGAGATGCTTCAGAATCTGAGGAGGACGATAGGCGTGTCGAAAATGTCATGGAAAATCCAGACACCCGGCCTTCAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCC AAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATT GAAAAACGCAAGAAAGCAGAAGAAGCAGAAGAAAAAGCTGCAGCCGCGGCGGCTGCTGCTGAGGCTAAACGTCGTGAAGAAGAAGCAGCTCGTGAACAAGCTGAATACGAGCGCTTAAAACAAGAGTTTAGTATTG AAGAAG ]
[-] EMBL CD144854 [ TTGGAAATGTAGGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCTTCAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCC AAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATT GAAAAACGCAAGAAAGCAGAAGAAGCAGAAGAAAAAGCTGCAGCCGCGGCAGCTGCTGCTGAGGCTAAACGTCGTGAAGAAGAAGCAGCTCGTGAACAAGCTGAATACGAGCGCTTAAAACAAGAGTTTAGTATTG AAGAAG ]
[+] EMBL CD184334 [ tcCACCCGGCCTTCAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCCAAAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATT GAAAAACGCAAGAAAGCAGAAGAAGCAGAAGAAAAAGCTGCAGCCGCGGCAGCTGCTGCTGAGGCTAAACGTCGTGAAGAAGAAGCAGCTCGTGAACAAGCTGAATACGAGCGCTTAAAACAAGAG ]
[-] EMBL CD063395 [ GATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCC AAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATT GAAAAACGCAAGAAAGCAGAAGAAGCAGAAGAAAAAGCTGCAGCCGCGGCAGCTGCTGCTGAGGCTAAACGTCGTGAAGAAGAAGCAGCTCGTGAACAAGCTGAATACGAGCGCTTAAAACAAG ]
[+] EMBL CD119697 [ ccttcatGGAAAA CGAAGAC TGGAAATT GAAAAACGCAAGAAAGCAGAAGAAGCAGAAGAAAAAGCTGCAGCCGCGGCAGCTGCTGCTGAGGCTAAACGTCGTGAAGAAGAAGCAGCTCGTGAACAAGCTGAATACGAGCGCTTAAAACAAGAG TTAGTATTG AAGAAGAGGGATTAGATGCACAACAACAAGATGAC AAAGCAAAAGCATTAATTAATGCACAAAT ]
consensusID : consensus_11123#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence
[ATGCAGCTGCTGCTGGCAGAGTGCGTCGCCGCGTTGGAAATGTAGGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCTTCAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCCAAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATTGAAAAACGCAAGAAAGCAGAAGAAGCAGAAGAAAATGCTGCTGGCAGAGTGCGTCGCCGCGTTGGAAATGTANGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGNAGGAGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCCTCAGATGCAGACCAATCAAAAGAAAGTT]
[+] EMBL CD183756 [ATGCAGCTGCTGCTGGCAGAGTGCGTCGCCGCGTTGGAAATGTAGGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCTTCAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCCAAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATTGAAAAACGCAAGAAAGCAGAAGAAGCAGAAGAAAATGCTGCTGGCAGAGTGCGTCGCCGCGTTGGAAATGTANGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGNAGGAGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCCTCAGATGCAGACCAATCAAAAGAAAGTT]
consensusID : consensus_11123#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 339 fasta sequence
[CGTTGGAAATGTAGGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCCAAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATTGAAAAACGCAAGAAAGCAGAGGAAGCAGAAGAAAAAGCTGCAGCCGCGGCAGCTGCTGCTGAGGCTAAACGTCGTGAAGAAGAAGCAGCTCGTGAACAAGCTGAATACGAGCGCTTAAAACAAGAGTTTAGTATTGAAGAAGCGGGAAG]
[-] EMBL CD144853 [CGTTGGAAATGTAGGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCAGACCAATCAAAAGAAAGTTCAAAGAAAGTTGGCTCCAAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAAAGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATTGAAAAACGCAAGAAAGCAGAGGAAGCAGAAGAAAAAGCTGCAGCCGCGGCAGCTGCTGCTGAGGCTAAACGTCGTGAAGAAGAAGCAGCTCGTGAACAAGCTGAATACGAGCGCTTAAAACAAGAGTTTAGTATTGAAGAAG ]
[+] EMBL CD181471 [ CCGGGAGCATCAAAGGAAAATCGAAGACATGGAAATTGAAAAACGCAAGAAAGCAGAAGAAGCAGAAGAAAAAGCTGCAGCCGCGGCAGCTGCTGCTGAGGCTAAACGTCGTGAAGAAGAAGCAGCTCGTGAACAAGCTGAATACGAGCGCTTAAAACAAGAGTTTAGTATTGAAGAAGCGGGAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11123#0 CAGCCAANAATTTGGCACGAGGGTCTTCGGCGGGCTTATTTTCGCAGTCGCTATTCTTTT 60
consensus_11123#2 ------------------------------------------------------------
consensus_11123#1 ------------------------------------------------------------
consensus_11123#0 GTCTGGGGTATTTATTGTCTGGAAATTGTATAACAAGTCAACTAAGAAAGGTGGACAGCG 120
consensus_11123#2 ------------------------------------------------------------
consensus_11123#1 ------------------------------------------------------------
consensus_11123#0 CCCCCACGTACATGCAGCTGCTGCTGGCAGAGTGCGTCGCCGCGTTGGAAATGTAGGTGG 180
consensus_11123#2 ------------------------------------------------------------
consensus_11123#1 -----------ATGCAGCTGCTGCTGGCAGAGTGCGTCGCCGCGTTGGAAATGTAGGTGG 49
consensus_11123#0 ACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCG 240
consensus_11123#2 ---------------------------------------------------CGTTGGAAA 9
consensus_11123#1 ACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGAATCTGAGGAGGACGATAGGCG 109
** * *
consensus_11123#0 TGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCTTCAGATGCAGACCAATCAAAAGA 300
consensus_11123#2 TGT---AGGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCAGACCAATCAAAAGA 66
consensus_11123#1 TGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCTTCAGATGCAGACCAATCAAAAGA 169
*** * ** * * * * * *** *********************
consensus_11123#0 AAGTTCAAAGAAAGTTGGCTCCAAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAA 360
consensus_11123#2 AAGTTCAAAGAAAGTTGGCTCCAAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAA 126
consensus_11123#1 AAGTTCAAAGAAAGTTGGCTCCAAAAAAGCTGCCAAGTTAGCTGAAAAGGAACGTCGAAA 229
************************************************************
consensus_11123#0 AGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGA 420
consensus_11123#2 AGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGA 186
consensus_11123#1 AGAAGAGCGAGAAGCTGAGGAACGTTACCGGGAGCATCAAAGGAAAATCGAAGACATGGA 289
************************************************************
consensus_11123#0 AATTGAAAAACGCAAGAAAGCAGAAGAAGCAGAAGAAAAAGCTGCAGCCGCGGCA-GCTG 479
consensus_11123#2 AATTGAAAAACGCAAGAAAGCAGAGGAAGCAGAAGAAAAAGCTGCAGCCGCGGCA-GCTG 245
consensus_11123#1 AATTGAAAAACGCAAGAAAGCAGAAGAAGCAGAAGAAAATGCTGCTGGCAGAGTGCGTCG 349
************************ ************** ***** * * * * *
consensus_11123#0 CTGC--TGAGGCTAAACGTCGTGAAGAAGA---AGCAGCTCGTGAACAAGCTGAATACGA 534
consensus_11123#2 CTGC--TGAGGCTAAACGTCGTGAAGAAGA---AGCAGCTCGTGAACAAGCTGAATACGA 300
consensus_11123#1 CCGCGTTGGAAATGTANGTGGACAGCGCCGTATGGCTGCTCGGATGAGAGATGCTTCAGA 409
* ** ** * * ** * * ** ***** ** ** * **
consensus_11123#0 GCGCTTAAAACAAGAGTTTAGTATTGAAGAAGAGGGATTAGATGCACAACAACAAGATGA 594
consensus_11123#2 GCGCTTAAAACAAGAGTTTAGTATTGAAGAAGCGGGAAG--------------------- 339
consensus_11123#1 ATCTGNAGGAGACGATAGGCGTGTCGAAAATGTCATGGAAAATCTAGACACCCGGCCCTC 469
* * * ** ** * *** * *
consensus_11123#0 CAAAGCAAAAGCATTAATTAATGCACAAATTATTGCAGCTATTGAAGAAGCAAAAATCAT 654
consensus_11123#2 ------------------------------------------------------------
consensus_11123#1 AGATGCAGACCAATCAAAAGAAAGTT---------------------------------- 495
consensus_11123#0 TCCAGTCGAACATTTGGCAATCAATTTAAATTTGAAAACAGAGGTTTGTATAGAAAACAT 714
consensus_11123#2 ------------------------------------------------------------
consensus_11123#1 ------------------------------------------------------------
consensus_11123#0 CAAAGCA 721
consensus_11123#2 -------
consensus_11123#1 -------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||