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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11131#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 676 fasta sequence
[TTCGGCCGACGGAATCGCTACACGTGAGTGCTGTATACAATAGTGGTCAATTGACGAACTTACACGATGATTTCTCGTCTTGGGATATGTCAGTCAACCATTACAAGATGTCTAAGACAGCATGCGTCGGCGTATCACAAGAATGTCATAGATCATTATGAGAACCCTCGTAATGTAGGCTCACTCGATAAGAAAGACACGTCTGTCGGTACTGGTTTGGTTGGTGCACCGGCCTGCGGAGATGTCATGAAGCTTCAAATAAAGGTAGATGAAAATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGGCAATTGCATCTAGTTCACTGGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAACTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCTGAAGATGCTATCCAGGCTGCTATTAAAGATTATAAGAAAAAGTCTACTTGAGTATTACTTTATAAGCACAAATCAATCCCAATCATATTCGACGTCATAATTTCTCATTTCACTTAGATAGACATTATTGTAAATCATAAGCACTATATTGAAAGTCATTTTGTTATCTAACAAATTTAACCA-TAGATACAGAGATACTCTCATAAT-ATAAA--GGTTGTTT]
[+] EMBL CD081655 [TTCGGCCGACGGAATCGCT CACGTGAGTGCTGT TACAATAGTGGTCAATTGACGAACTTACACGATGATTTCTCGTCTTGGGATATGTCAGTCAACCATTACAAGATGTCTAAGACAGCATGCGTCGGCGTATCACAAGAATGTCATAGATCATTATGAGAACCCTCGTAATGTAGGCTCACTCGATAAGAAAGACACGTCTGTCGGTACTGGTTTGGTTGGTGCACCGGCCTGCGGAGATGTCATGAAGCTTCAAATAAAGGTAGATGAAAATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGGCAATTGCATCTAGTTCACTGGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAACTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCTGAAGATGCTATCCAGGCTGCTATTAAAGATTATAAGAAAAAGTCTACTTGAGTATTACTTTATAAGCACAAATCAATCCCAATCATATTCGACGTCATAATTTCTCATTTCACTTAGATAGACATTATTGTAAATCATAAGCACTATATTGAAAGTCATTTTGTTATCTAACAAATTTAACCA TAGATACAGAGATACTCTCATAATAATAAA GTTTGTT ]
[+] EMBL CD081923 [ gaAATCGCTACACGTGAGTGCTGTATACAATAGTGGTCAATTGACGAACTTACACGATGATTTCTCGTCTTGGGATATGTCAGTCAACCATTACAAGATGTCTAAGACAGCATGCGTCGGCGTATCACAAGAATGTCATAGATCATTATGAGAACCCTCGTAATGTAGGCTCACTCGATAAGAAAGACACGTCTGTCGGTACTGGTTTGGTTGGTGCACCGGCCTGCGGAGATGTCATGAAGCTTCAAATAAAGGTAGATGAAAATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGGCAATTGCATCTAGTTCACTGGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAACTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCTGAAGATGCTATCCAGGCTGCTATTAAAGATTATAAGAAAAAGTCTACTTGAGTATTACTTTATAAGCACAAATCAATCCCAATCATATTCGACGTCATAATTTCTCATTTCACTTAGATAGACATTATTGTAAATCATAAGCACTATATTGAAAGTCATTNTGTTATCTAACAAATTTAACCA TAGATACAGAGATACTCTCATAAT ATAAA NGTTGTT ]
[+] EMBL CD192668 [ ATCGCTACACGTGAGTGCTGTATACAATAGTGGTCAATTGACGAACTTACACGATGATTTCTCGTCTTGGGATATGTCAGTCAACCATTACAAGATGTCTAAGACAGCATGCGTCGGCGTATCACAAGAATGTCATAGATCATTATGAGAACCCTCGTAATGTAGGCTCACTCGATAAGAAAGACACGTCTGTCGGTACTGGTTTGGTTGGTGCACC ]
[+] EMBL CD063207 [ CAATAGTGGTCAATTGACGAACTTACACGATGATTTCTCGTCTTGGGATATGTCAGTCAACCATTACAAGATGTCTAAGACAGCATGCGTCGGCGTATCACAAGAATGTCATAGATCATTATGAGAACCCTCGTAATGTAGGCTCACTCGATAAGAAAGACACGTCTGTCGGTACTGGTTTGGTTGGTGCACCGGCCTGCGGAGATGTCATGAAGCTTCAAATAAAGGTAGATGAAAATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGG ]
[-] EMBL CD063234 [ AATAGTGGTCAATTGACGAACTTACACGATGATTTCTCGTCTTGGGATATGTCAGTCAACCATTACAAGATGTCTAAGACAGCATGCGTCGGCGTATCACAAGAATGTCATAGATCATTATGAGAACCCTCGTAATGTAGGCTCACTCGATAAGAAAGACACGTCTGTCGGTACTGGTTTGGTTGGTGCACCGGCCTGCGGAGATGTCATGAAGCTTCAAATAAAGGTAGATGAAAATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTG ]
[-] EMBL CD135286 [ GTCAATTGACGAACTTACACGATGATTTCTCGTCTTGGGATATGTCAGTCAACCATTACAAGATGTCTAAGACAGCATGCGTCGGCGTATCACAAGAATGTCATAGATCATTATGAGAACCCTCGTAATGTAGGCTCACTCGATAAGAAAGACACGTCTGTCGGTACTGGTTTGGTTGGTGCACCGGCCTGCGGAGATGTCATGAAGCTT ]
[+] EMBL CD202789 [ ATTTCTCTTCCCGGGATATGTCAGTCAACCATTACAAGATGTCTAAGACAGCATGCGTCGGCGTATCACAAGAATGTCATAGATCATTATGAGAACCCTCGTAATGTAGGCTCACTCGATAAGAAAGACACGTCTGTCGGTACTGGTTTGGTTGGTGCACCGGCCTGCGGAGATGTCATGAAGCTTCAAATAAAGGTAGATGAAAATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGGCAAT ]
[+] EMBL CD133059 [ CAGTCAACCATTACAAGATGTCTAAGACAGCATGCGTCGGCGTATCACAAGAATGTCATAGATCATTATGAGAACCCTCGTAATGTAGGCTCACTCGATAAGAAAGACACGTCTGTCGGTACTGGTTTGGTTGGTGCACCGGCCTGCGGAGATGTCATGAAGCTTCAAATAAAGGTAGATGAAAATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGGCAATTGCATCTAGTTCACTGGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAACTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCTGAAGATGCTATCCAGGCTGCTATTAAAGATTATAAGAAAAAGTCTACTTGAGTATTACTTTATAAGCACAAATCAATCCCAATCATATTCGACGTCATAATTTCTCATTTCACTTAGATAGACATTATTGTNAATCATAAGCACTATATTGAAAGTCATTTTGTTATCT ]
[+] EMBL AI444555 [ GTGATATTGCCAAAGAACTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCTGAAGATGCTATCCAGGCTGCTATTAAAGATTATAAGAAAAAGTCTACTTGAGTATTACTTTATAAGCACACATCAATCCCAATCATATTCGACGTCATAATTTCTCATTTCACTTAGATAGACATTATTGTAAATCATGAGCACTATATTGAATGTCATTTTGTTATCTAACATATTTCACCAGTAGATACAGAGATCCTCTCATAAT AAAGATTGGTTGTT ]
[+] EMBL AI447082 [ GTGATATTGCCAAAGAACTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCTGAAGATGCTATCCAGGCTGCTATTAAAGATTATAAGAAAAAGTCTACTTGAGTATTACTTTATAAGCACACATCAATCCCAATCATATTCGACGTCATAATTTCTCATTTCACTTAGATAGACATTATTGTAAATCATGAGCACTATATTGAATGTCATTTTGTTATCTAACATATTTCACCAGTAGATACAGAGATCCTCTCATAAT AAAGATTGGTTGTT ]
[+] EMBL SM550 [ GCTATTAAAGATTATAAGAAAAAGTCTACTTGAGTATTACTTTATAAGCACAAATCAATCCCAATCATATTCGANGTCATAATTTCTCATTTCACTTAGATAGACATTATTGTAAATCATAAGCACTATATTGAAAGTCATTTGGTTATCTAACAAATTTAACCA TAGATACAGAGATACTCTCATAATAATAAA GTTGGTTT]
consensusID : consensus_11131#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 599 fasta sequence
[CTGTCCTGGGACATACGTTGTCGTTGGTTACTTTTCACAAACCAAAAAAATAATTCCGATGCTCAGTCAACCATTACAAGATGTCTAAGACAGCATGCGTCGGCGTATCACAAGAATGTCATAGATCATTATGAGAACCCTCGTAATGTAGGCTCACTCGATAAGAAAGACACGTCTGTCGGTACTGGTTTGGTTGGTGCACCGGCCTGCGGAGATGTCATGAAGCTTCAAATAAAGGTAGATGAAAATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGGCAATTGCATCTAGTTCACTGGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAA-CTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCTGAAGATGCTATCCAGGCTGCTATTAAAGATTATAAGAAAAAGTCTACTTGAGTATTACTTTATAAGCACAAATCAATCCCAATCATATTCGACGTCATAATTTCTCATTTCACTTAGATAGACATTATTGTAAATCATAAGCACTATATTGGAAGTCATTTTGTTATCTA]
[+] EMBL CD133218 [CTGTCCTGGGACATACGTTGTCGTTGGTTACTTTTCACAAACCAAAAAAATAATTCCGATGCTCAGTCAACCATTACAAGATGTCTAAGACAGCATGCGTCGGCGTATCACAAGAATGTCATAGATCATTATGAGAACCCTCGTAATGTAGGCTCACTCGATAAGAAAGACACGTCTGTCGGTACTGGTTTGGTTGGTGCACCGGCCTGCGGAGATGTCATGAAGCTTCAAATAAAGGTAGATGAAAATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGGCAATTGCATCTAGTTCACTGGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAA CTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCTGAAGATGCTATCCAGGCTGCTATTAAAGATTATAAGAAAAAGTCTACTTGAGTATTACTTTATAAGCACAAATCAATCCCAATCATATTCGACGTCATAATTTCTCATTTCACTTAGATAGACATTATTGTAAATCATAAGCACTATATTGGAAGTCATTTTGTTATCTA]
[+] EMBL CD065021 [ GACAGCATGCGTCGGCGTATCACAAGAATGTCATAGATCATTATGAGAACCCTCGTAATGTAGGCTCACTCGATAAGAAAGACACGTCTGTCGGTACTGGTTTGGTTGGTGCACCGGCCTGCGGAGATGTCATGAAGCTTCAAATAAAGGTAGATGAAAATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGGCAATTGCATCTAGTTCACTGGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAA CTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCTGAAGATGCTATCCAGGCTGCTATTAAAGATTATAAAAAAAAGCCCACTTGAGTATTACTTTATAAGCACAAATCAATCCCAATCATATTTGACCGCCTAATTTCTCATTTTACTTTAATACACACTATTGTAAATCATAAc ]
[+] EMBL CD062854 [ TATCACAAGAATGTCATAGATCATTATGAGAACCCTCGTAATGTAGGCTCACTCGATAAGAAAGACACGTCTGTCGGTACTGGTTTGGTTGGTGCACCGGCCTGCGGAGATGTCATGAAGCTTCAAATAAAGGTAGATGAAAATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGGCAATTGCATCTAGTTCACTGGCAACTGAATGGGTTAAAGGTAAAACAATTGAT ]
[-] EMBL CD093118 [ GGAGATGTCATGAAGCTTCAAATAAAGGTAGATGAAAATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGGCAATTGCATCTAGTTCACTGGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAGAAAATAGTGATATTGCCAAAGAA CTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCT ]
[-] EMBL CD093366 [ GGAGATGTCATGAAGCTTCAAATAAAGGTAGATGAAAATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGGCAATTGCATCTAGTTCACTGGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAGAAAATAGTGATATTGCCAAAGAA CTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCT ]
[-] EMBL CD093133 [ GGAGATGTCATGAAGCTTCAAATAAAGGTAGATGAAAATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGGCAATTGCATCTAGTTCACTGGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAA CTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCT ]
[-] EMBL CD062757 [ AGCTTCAAATAAAGGTAGATGAAAATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGGCAATTGCATTTAGTTCACTGGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAATCTAAAACTTCCTCCTGTCAAATTGCACTGTTCTATGCTTGCTG ]
[+] EMBL CD063076 [ AATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGGCAATTGCATCTAGTTCACTGGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAA CTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCTGAAGATGCTATCCAGGCTGCTATTAAAGATTATAAGAAAAAGTCTACTTGAGTATTACTTTATAAGCACAAATCAATCCCAATCATATTCGAC ]
[-] EMBL CD063215 [ ATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGGCAATTGCATCTAGTTCACTGGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAGGAA CTAAAACTTCCCCCTGTCAAATTGCACTGTTCTATGCTTGCTGAAGATGCTATCCAGGCTGCTATTAAAGATTATAAGAAAAAGTCTACTTGAGTATTACTTTATAAGCACAAAGCAATCCCAATCATATTAGACG ]
[-] EMBL CD063027 [ ATGGGAAGATAATAGATGCGAAATTTAAAACATTTGGTTGTGGTTCGGCAATTGCATCTAGTTCACTGGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAA CTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCTGAAGATGCTATCCAGGCTGCTATTAAAGATTATAAGAAAAAGTCTACTTGAGTATTACTTTATAAGCACAAATCAATCCCAATC ]
[-] EMBL CD138494 [ GGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAA CTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCTGAAGATGCTATC ]
[-] EMBL CD124923 [ GGCAACTGAATGGGTTAAAGGTAAAACAATTGATGATGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAA CTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCT ]
[-] EMBL CD138471 [ GGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAA CTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCT ]
[-] EMBL CD138483 [ GGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAA CTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCT ]
[-] EMBL CD093192 [ GGCAACTGAATGGGTTAAAGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAA CTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCT ]
[-] EMBL CD138408 [ TAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAA CTAAAACTTCCACCTGTCAAATTGCACTGTTCTATGCTTGCTGAAGATGCTATCCAGG ]
consensusID : consensus_11131#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 591 fasta sequence
[TTCGCACGAGGCTGATAAATGATTTCTAATAAGATGGGATATCCGCTGGCAGTTATTTCTGGATTTTGTGCAGCGTGTACCAGTCTATATGGCAAGTTATTGAGCGAGGGGTACATATTAACCAAATTGCTGGCGTGTTTCCCAGATGCAAACAAGAATTTTCTCGTCTTTTCAAGCTACGGTGGTGCTATTGTCCTAAATGTCGTAATGTGGCTGGCTCTTGTCACCGCACTTAGCATTAGTCAAAAAAGTGTTGCGGCACTGGCAACAAACACACTGTCGAATTTCGCTTTTTCAGCAGCTTTTGGTAGGTGTATTTTTCAAGAAGAACTGACTGGGAATTGGTTTCTTGGAATGCTTTGCCTGAGCATCGGAATTATTTTTTTGGTTTGTGAAAAGTAACCAACGACAACGTATGTCTCAGAACAGAACTACAAGAAAACTTCGTGGTGAAAATCATATTTTATGTACGTTTCATTACAATTAGTCTTTCCACGGCTGTACACTTTGATTATTAATATTAACCTTAGTAGTGTTTTTTGTATAAAAACTGTGGGCTATTTATCTACTTCGTAAGCATATCGCTGCTGT]
[+] EMBL CD083541 [TTCGCACGAGGCTGATAAATGATTTCTAATAAGAT GGATATCCGCTGGCAGTTATTTCTGGATTTTGTGCAGCGTGTACCAGTCTATATGGCAAGTTATTGAGCGAGGGGTACATATTAACCAAATTGCTGGCGTGTTTCCCAGATGCAAACAAGAATTTTCTCGTCTTTTCAAGCTACGGTGGTGCTATTGTCCTAAATGTCGTAATGTGGCTGGCTCTTGTCACCGCACTTAGCATTAGTCAAAAAAGTGTTGCGGCACTGGCAACAAACACACTGTCGAATTTCGCTTTTTCAGCAGCTTTTGGTAGGTGTATTTTTCAAGAAGAACTGACTGGGAATTGGTTTCTTGGAATGCTTTGCCTGAGCATCGGAATTATTTTTTTGGTTTGTGAAAAGTAACCAACGACAACGTATGTCTCAGAACAGAACTACAAGAAAACTTCGTGGTGAAAATCATATTTTATGTACGTTTCATTACAATTAGTCTTTCCACGGCTGTACACTTTGATTATTTATATTAACC ]
[+] EMBL CD130446 [ CTGATAAATGATTTCTAATAAGATGGGATATCCGCTGGCAGTTATTTCTGGATTTTGTGCAGCGTGTACCAGTCTATATGGCAAGTTATTGAGCGAGGGGTACATATTAACCAAATTGCTGGCGTGTTTCCCAGATGCAAACAAGAATTTTCTCGTCTTTTCAAGCTACGGTGGTGCTATTGTCCTAAATGTCGTAATGTGGCTGGCTCTTGTCACCGCACTTAGCATTAGTCAAAAAAGTGTTGCGGCACTGGCAACAAACACACTGTCGAATTTCGCTTTTTCAGCAGCTTTTGGTAGGTGTATTTTTCAAGAAGAACTGACTGNGAATTGGNTTC ]
[+] EMBL CD146081 [ CTGATAAATGATTTCTAATAAGATGGGATATCCGCTGGCAGTTATTTCTGGATTTTGTGCAGCGTGTACCAGTCTATATGGCAAGTTATTGAGCGAGGGGTACATATTAACCAAATTGCTGGCGTGTTTCCCAGATGCAAACAAGAATTTTCTCGTCTTTTCAAGCTACGGTGGTGCTATTGTCCTANATGTCGTAATGTGGCTGGCTCTTGTCACCGCACTTAGCATTAGTCAAAA ]
[-] EMBL CD130264 [ TGATAAATGATTTCTAATAAGATGGGATATCCGCTGGCAGTTATTTCTGGATTTTGTGCAGCGTGTACCAGTCTATATGGCAAGTTATTGAGCGAGGGGTACATATTAACCAAATTGCTGGCGTGTTTCCCAGATACAAACAAGAATTTTCTCGTCTTTTCAAGCTACGGTGGTGCTATTGTCCTAAATGTCGTAATGTGGCTGGCTCTTGTCACCG ]
[+] EMBL AI975294 [ GATAAATGATTTCTAATAAGATGGGATATCCGCTGGCAGTTATTTCTGGATTTTGTGCAGCGTGTACCAGTCTATATGGCAAGTTATTGAGCGAGGGGTACATATTAACCAAATTGCTGGCGTGTTTCCCAGATGCAAACAAGAATTTTCTCGTCTTTTCAAGCTACGGTGGTGCTATTGTCCTAAATGTCGTAATGTGGCTGGCTCTTGTCACCGCACTTAGCATTAGTCAAAAAAGTGTTGCGGCACTGGCAACAAACACACTGTCGAATTTCGCTTTTTCAGCAGCTTTTGGTAGGTGTATTTTTCAAGAAGAACTGACTGGGAATTGGTTTCTTGGAATGCTTTGCCTGAGCATCGGAATTATTTTTTTGGTTTGTGAAAAGTAACCAACGACAACGTATGTCTCAGAACAGAACTACAAGAAAACTTCGTGGTGAAAATCATATTTTATGTACGTTTCATTACAATTAGTCTTTCCACGGCTGTACACTTTGATTATTAATATTAACCTTAGTAGTGTTTTTTGTATAAAAACTGTGGGCTATTTATCTACTTCGTAAGCATATCGCTGCTGT]
[+] EMBL BF936456 [ AAATGATTTCTAATAAGATGGGATATCCGCTGGCAGTTATTTCTGGATTTTGTGCAGCGTGTACCAGTCTATATGGCAAGTTATTGAGCGAGGGGTACATATTAACCAAA ]
[+] EMBL AI976876 [ GTTATTGAGCGAGGGGTACATATTAACCAAATTGCTGGCGTGTTTCCCAGATGCAAACAAGAATTTTCTCGTCTTTTCAAGCTACGGTGGTGCTATTGTCCTAAATGTCGTAATGTGGCTGGCTCTTGTCACCGCACTTAGCATTAGTCAAAAAAGTGTTGCGGCACTGGCAACAAACACACTGTCGAATTTCGCTTTTTCAGCAGCTTTTGGTAGGTGTATTTTTCAAGAAGAACTGACTGGGAATTGGTTTCTTGGAATGCTTTGCCTGAGCATCGGAATTATTTTTTTGGTTTGTGAAAAGTAACCAACGACAACGTATGTCTCAGAACAGAACTACAAGAAAACTTCGTGGTGAAAATCATATTTTATGTACGTTTCATTACAATTAGTCTTTCCACGGCTGTACACTTTGATTACTAATATTAACCTTAGTGGTGTTTTTTGTATAAAGACTGTGGGCTATTTATCTACTTCGTTAGCAT ]
consensusID : consensus_11131#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence
[CAAATTGCACTTTTTAATGCTTGTTGAAGATGCTATCCAGGTTGCTTTTAAAGATTTTATGAAAAAGTCTACTTGCGTATTACCTTTTAAGCACAATTCAATCCCAATCATTTTCGACGTCATAATTTCTCATTTCACTTGGATTGACATTATTGTAAATCATAAGCTCTATATTGAAAGTCATTTTGTTATTTAACAAATTTAACCCTAGATACAGGGATACTCTCATAATAATAAAGGTTGTTTTCATCTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL AI395113 [CAAATTGCACTTTTTAATGCTTGTTGAAGATGCTATCCAGGTTGCTTTTAAAGATTTTATGAAAAAGTCTACTTGCGTATTACCTTTTAAGCACAATTCAATCCCAATCATTTTCGACGTCATAATTTCTCATTTCACTTGGATTGACATTATTGTAAATCATAAGCTCTATATTGAAAGTCATTTTGTTATTTAACAAATTTAACCCTAGATACAGGGATACTCTCATAATAATAAAGGTTGTTTTCATCTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11131#0 TTCGGCCGACGGAATCGCTACACGTGAGTGCTGTATACAATAGTGGTCAATTGACGAACT 60
consensus_11131#1 -----------------CTGTCCTGGGACATACGTTGTCGTTGGTTACTTTTCACAAACC 43
consensus_11131#3 ------------------------------------------------------------
consensus_11131#2 ------------------------------------------------------------
consensus_11131#0 TACACGATGATTTCTCGTCTTGGGATATGTCAGTCAACCATTACAAGATGTCTAAGACAG 120
consensus_11131#1 AAAAAAATAATTCC---------GATGC-TCAGTCAACCATTACAAGATGTCTAAGACAG 93
consensus_11131#3 ------------------------------------------------------------
consensus_11131#2 ----------------------------TTCGCACGAGGCTGATAAATGATTTCTAATAA 32
consensus_11131#0 CATGCGTCGGCGTATCACAAGAATGTCATAGATCATTATGAGAACCCTCGTAATGTAGGC 180
consensus_11131#1 CATGCGTCGGCGTATCACAAGAATGTCATAGATCATTATGAGAACCCTCGTAATGTAGGC 153
consensus_11131#3 ------------------------------------------------------------
consensus_11131#2 GATGGGATATCCGCTGGCAGTTATTTCTGGATTTTGTGCAGCGTGTACCAGTCTATATGG 92
consensus_11131#0 TCACTCGATAAGAAAGACACGTCTGTCGGTACTGGTTTGGTTGGTGCACCGGCCTGCGGA 240
consensus_11131#1 TCACTCGATAAGAAAGACACGTCTGTCGGTACTGGTTTGGTTGGTGCACCGGCCTGCGGA 213
consensus_11131#3 ------------------------------------------------------------
consensus_11131#2 CAAGTTATTGAGCGAGGGGTACATATTAACCAAATTGCTGGCGTGTTTCCCAGATGCAAA 152
consensus_11131#0 GATGTCATGAAGCTTCAAATAAAGGTA-GATGAAAATGGGAAGATAATAGATGCGAAATT 299
consensus_11131#1 GATGTCATGAAGCTTCAAATAAAGGTA-GATGAAAATGGGAAGATAATAGATGCGAAATT 272
consensus_11131#3 ------------------------------------------------------------
consensus_11131#2 CAAGAATTTTCTCGTCTTTTCAAGCTACGGTGGTGCTATTGTCCTAAATGTCGTAATGTG 212
consensus_11131#0 TAAAACATTTGGTTGTGGTTCGGCAATTGCATCTAGTTCACTGGCAACTGAATGGGTTAA 359
consensus_11131#1 TAAAACATTTGGTTGTGGTTCGGCAATTGCATCTAGTTCACTGGCAACTGAATGGGTTAA 332
consensus_11131#3 ------------------------------------------------------------
consensus_11131#2 GCTGGCTCTTGTCACCGCACTTAGCATTAGTCAAAAAAGTGTTGCGGCACTGGCAACAAA 272
consensus_11131#0 AGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAACTAA- 418
consensus_11131#1 AGGTAAAACAATTGATGAAGCTGCAAAAATAAAAAATAGTGATATTGCCAAAGAACTAA- 391
consensus_11131#3 ------------------------------------------------------------
consensus_11131#2 CACACTGTCGAATTTCGCTTTTTCAGCAGCTTTTGGTAGGTGTATTTTTCAAGAAGAACT 332
consensus_11131#0 AACTTCCACCTGTCAAATTGCACTGTTCTA--TGCTTGCTGAAGATGCTATCCAGGCTGC 476
consensus_11131#1 AACTTCCACCTGTCAAATTGCACTGTTCTA--TGCTTGCTGAAGATGCTATCCAGGCTGC 449
consensus_11131#3 -------------CAAATTGCACTTTTTAA--TGCTTGTTGAAGATGCTATCCAGGTTGC 45
consensus_11131#2 GACTGGGAATTGGTTTCTTGGAATGCTTTGCCTGAGCATCGGAATTATTTTTTTGGTTTG 392
*** * * * ** * * * * * ** *
consensus_11131#0 TATTAAAGATTATAAGAAAAAGTCTACTTGAGTATTACTTTATAAGCACAAATCA--ATC 534
consensus_11131#1 TATTAAAGATTATAAGAAAAAGTCTACTTGAGTATTACTTTATAAGCACAAATCA--ATC 507
consensus_11131#3 TTTTAAAGATTTTATGAAAAAGTCTACTTGCGTATTACCTTTTAAGCACAATTCA--ATC 103
consensus_11131#2 TGAAAAGTAACCAACGACAACGTATGTCTCAGAACAGAACTACAAGAAAACTTCGTGGTG 452
* ** * * ** ** ** * * * * * *** * * ** *
consensus_11131#0 CCAATCATATTCGACGTCATAATTTCTCATTTCACTTAGA-TAGACATTATTGTAAATCA 593
consensus_11131#1 CCAATCATATTCGACGTCATAATTTCTCATTTCACTTAGA-TAGACATTATTGTAAATCA 566
consensus_11131#3 CCAATCATTTTCGACGTCATAATTTCTCATTTCACTTGGA-TTGACATTATTGTAAATCA 162
consensus_11131#2 AAAATCATATTTTATGT----ACGTTTCATTACAATTAGTCTTTCCACGGCTGTACACTT 508
****** ** * ** * * ***** ** ** * * ** **** *
consensus_11131#0 TAAGCACTA-TATTGAAAGTCATTTTGTTATCTA-ACAAATTTAACCATAGA-TACAGAG 650
consensus_11131#1 TAAGCACTA-TATTGGAAGTCATTTTGTTATCTA-------------------------- 599
consensus_11131#3 TAAGCTCTA-TATTGAAAGTCATTTTGTTATTTA-ACAAATTTAACCCTAGA-TACAGGG 219
consensus_11131#2 TGATTATTAATATTAACCTTAGTAGTGTTTTTTGTATAAA---AACTGTGGGCTATTTAT 565
* * ** **** * * **** * *
consensus_11131#0 ATACTCTCATAATA-TAAAGGTTGTTT--------------------------------- 676
consensus_11131#1 ------------------------------------------------------------
consensus_11131#3 ATACTCTCATAATAATAAAGGTTGTTTTCATCTCCCAAAAAAAAAAAAAAAAAAAAAAAA 279
consensus_11131#2 CTACT-TCGTAAGCATATCGCTGCTGT--------------------------------- 591
consensus_11131#0 -------------------------
consensus_11131#1 -------------------------
consensus_11131#3 AAAAAAAAAAAAAAAAAAAAAAAAA 304
consensus_11131#2 -------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||