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Schistosoma mansoni
cluster # 11136 cluster # 11136       Sequences # 35       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11136#0 length = 692 sequences # 26  
consensus_11136#1 length = 624 sequences # 7  
consensus_11136#2 length = 432 sequences # 1  
consensus_11136#3 length = 326 sequences # 1  

consensusID : consensus_11136#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 26
consensus length = 692
fasta sequence
                              [GCCAAAATTTCGGTACGAGGCATATATATTACTTCAATGAATTCAATTTATACACATTCTAATTATCGTTATAATGGATTTATGGATCAATCTAAAAAAGATTCATATGAGGCTATTAACTTTCATTTGAAAACAA-TTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATACCAGATAATTATGGTAATCATGATAACCATGATGATCAAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAAT-GAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGAGAATATAATGATCGATATTATAGACCACGTGATGAGCCGGATATCGAATCAACAGAAGAAACGACTGAAGGGCCGAGAAGAACTACAACGACTACAGATTTTACGGGAGAGTAAAGTATTCATTGAATTAATTCAACTGATTACTCAGGGCTCAAAATATAAGGTTCAACATTTAACATTTTTAGTTAAATATTTTCATTCAATATGAGAATAACTCTACAGATGTATCTTATCCTTCAGTTTCCATCAATGAATGATTATTCATTAAATATGTATATGCTTGAAGTATGAAACATTCGACTTGTATCANA]

[+] EMBL CD080785             [GCCAAAATTTCGGTACGAGGCATATATATTACTTCAATGAATTCAATTTATACACATTCTAATTATCGTTATAATGGATTTATGGATCAATCTAAAAAAGATTCATATGAGGCTATTAACTTTCCATTGAAAACAA TTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATACCAGATAATTATGGTAATCATGATAACCATGATGATCAAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAAT GAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGAGAATATAATGATCGATATTATAGACCACGTGATGAGCCGGATATCGAATCAACAGAAGAAACGACTGAAGGGCCGAGAAGAACTACAACGACTACAGATTTTACGGGAGAGTAAAGTATTCATTGAATTAATTCAACTGATTACTCAGGGCTCAAAATATAAGGTTCAACATTTAACATTTTTAGTTAAATATTTTCATTCAATATGAGAATAACTCTACAGATGTATCTTATCCTTCAGTTTCCATCAATGAATGATTATTCATTAAATATGTATATGCTTGAAGTATGAAACATTCGACTTGTATCANA]
[+] EMBL CD059177             [                                                                                                                            ATTTGAAAACAA TTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATACCAGATAATTATGGTAATCATGATAACCATGATGATCAAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAAT GAAAGGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGA                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD059219             [                                                                                                                            ATTTGAAAACAA TTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATACCAGATAATTATGGTAATCATGATAACCATGATAATCAAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAAT GAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGA                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD059232             [                                                                                                                            ATTTGAAAACAA TTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATACCAGATAATTATGGTAATCATGATAACCATGATGATCAAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAAT GAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGA                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD059189             [                                                                                                                            ATTTGAAAACAA TTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATACCAGATAATTATGGTAATCATGATAACCATGATGATCAAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAAT GAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGA                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD059199             [                                                                                                                            ATTTGAAAACAA TTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATACCAGATAATTATGGTAATCATGATAACCATGATGATCAAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAAT GAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGA                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD059207             [                                                                                                                            ATTTGAAAACAA TTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATACCAGATAATTATGGTAATCATGATAACCATGATGATCAAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAAT GAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGA                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD059282             [                                                                                                                              TTGAAAACAA TTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATACCAGATAATTATGGTAATCATGATAACCATGATGATCAAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAATGGAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGA                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD059299             [                                                                                                                              TTGAAAACAA TTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATGCCAGATAATTATGGTAATCATGATAACCATGATGATCAAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAAT GAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGA                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD059184             [                                                                                                                              TTGAAAACAA TTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATACCAGATAATTATGGTAATCATGATAACCATGATGATCAAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAAT GAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGA                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD059261             [                                                                                                                              TTGAAAACAA TTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATACCAGATAATTATGGTAATCATGATAACCATGATGATCAAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAAT GAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGA                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD059281             [                                                                                                                              TTGAAAACAA TTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATACCAGATAATTATGGTAATCATGATAACCATGATGATCAAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAAT GAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGA                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD059294             [                                                                                                                              TTGAAAACAA TTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATACCAGATAATTATGGTAATCATGATAACCATGATGATCAAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAAT GAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGA                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD059241             [                                                                                                                              TTGAAAACAA TTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATACCAGATAATTATGGTAATCATGATAACCATGATAATCAAGAGTATGATTCATATCATAGTAGTGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAAT GAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGA                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD059293             [                                                                                                                              TTGAAAACAA TTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATACCAGATAATTATGGTAATCATGATAACCATGATGATCAAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAGAAGAACTGAAACATCGTAAATACAAT GAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGA                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD059266             [                                                                                                                               TGAAAACAA TTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATACCAGATAATTATGGTAATCATGATAACCATGATGATCAAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAAT GAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGAG                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD059269             [                                                                                                                               TGAAAACAA TTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATACCAGATAATTATGGTAATCATGATAACCATGATGATCAAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAAT GAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGAG                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD059237             [                                                                                                                               TGAAAACAA TTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATACCAGATAATTATGGTAATCATGATAACCATGATGATCAAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAAT GAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGAG                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD059251             [                                                                                                                               TGAAAACAA TTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATACCAGATAATTATGGTAATCATGATAACCATGATGATCAAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAAT GAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGAG                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD059295             [                                                                                                                               TGAAAACAA TTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATACCAGATAATTATGGTAATCATGATAACCATGATGATCAAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAAT GAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGAG                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD059260             [                                                                                                                               TGAAAACAA TTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATACCAGATAATTATGGTAATCATGATAACCATGATGATCAAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAAT GAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGAG                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD059170             [                                                                                                                               TGAAAACAA TTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATACCTGATAATTATGGTAATCATGATAACCATGATGATCAAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAAT GAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGAG                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD059203             [                                                                                                                               TGAAAACAA TTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATACCAGATAATTATGGTAATCATGATAACCATGATGATCAAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAAT GAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGAG                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD059263             [                                                                                                                                 gAAACAATTTCATGGGCATAAATATTATATGGATTATGGAAATGGATTTATACCAGATAATTATGGTAATCATGATAACCATGATGATCAAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAAT GAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGAG                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD059309             [                                                                                                                                                                                               ATGGTAATCATGATAACCATGATGATCAAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAAT GAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGA                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AA566196             [                                                                                                                                                                                                                                                                                                                                            AATACAAT GAATATTATAAA   GATAATGAAGAAGAAGAGGAAGGTGGAGAATATAATGATCGATATTATAGACCACGTGATGAGCCGGATATCGAATCAACAGAAGAAACGACTGAAGGGCCGAGAAGAACTACAACGACTACAGATTTTNCGGGAGAGTAAAGTATTCATTGAATTAATTCAACTGATTACTCAGGGCTCAAAATATAAGG                                                                                                                                                   ]


>consensus_11136#0 GCCAAAATTTCGGTACGAGGCATATATATTACTTCAATGAATTCAATTTATACACATTCT AATTATCGTTATAATGGATTTATGGATCAATCTAAAAAAGATTCATATGAGGCTATTAAC TTTCATTTGAAAACAATTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATA CCAGATAATTATGGTAATCATGATAACCATGATGATCAAGAGTATGATTCATATCATAGT AATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCA ATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAATGAAAAGTATAAAGGTGATAAT GAAGAAGAAGAGGAAGGTGGAGAATATAATGATCGATATTATAGACCACGTGATGAGCCG GATATCGAATCAACAGAAGAAACGACTGAAGGGCCGAGAAGAACTACAACGACTACAGAT TTTACGGGAGAGTAAAGTATTCATTGAATTAATTCAACTGATTACTCAGGGCTCAAAATA TAAGGTTCAACATTTAACATTTTTAGTTAAATATTTTCATTCAATATGAGAATAACTCTA CAGATGTATCTTATCCTTCAGTTTCCATCAATGAATGATTATTCATTAAATATGTATATG CTTGAAGTATGAAACATTCGACTTGTATCANA



consensusID : consensus_11136#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 624
fasta sequence
                              [TCTATTTATCGA-CAACT-TCTCCATTGAAAACAATTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATACCAGATAATTATGGTAATCATGATAACCATGATGATCAAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAATGAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGAGAATATAATGATCGATATTATAGACCACGTGATGAGCCGGATATCGAATCAACAGAAGAAACGACTGAAGGGCCGAGAAGAACTACAACGACTACAGATTTTACGGGAGAGGAAAGTATTCATTGAATTAATTCAACTGATTACTCAGGGCTCAAAATATAAGGTTCAACATTTAACATTTTTAGTTAAATATTTTCATTCAATATGAGAATAACTCTACAGATGTATTTTATCCTTCAGTTTCCATCAATGAATGATTATTCATTAAATATGTATATGCTTGAAGTATGAAACATTCGACTTGTATCAAAGAACACTGTGATATTTGTATGTAATAATAATTTCT]

[+] EMBL CD059167             [TCTATTTATCGA CAACTCTCTCCATTGAAAACAATTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATACCAGATAATTATGGTAATCATGATAACCATGATGATCGAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAATGAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGA                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD059200             [ CTATTTATCGAGCAACT TCTCCATTGAAAACAATTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATACCAGATAATTATGGTAATCATGATAACCATGATGATCAAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAATGAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGA                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD059185             [                       CATTGAAAACAATTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATACCAGATAATTATGGTAATCATGATAACCATGATGATCAAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAATGAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGA                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD059206             [                       CATTGAAAACAACTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATACCAGATAATTATGGTAATCATGATAACCATGATGATCAAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAATGAATAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGA                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD059208             [                       CATTGAAAACAATTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATACCAGATAATTATGGTAATCATGATAACCATGATGATCAAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAATGAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGA                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD059175             [                       CATTGAAAACAATTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATACCAGATAATTATGGTAATCATGATAACCATGATGATCAAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAATGAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGA                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD074706             [                                                                                                                   CAAGAGTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATCCAATGAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGAGAATATAATGATCGATATTATAGACCACGTGATGAGCCGGATATCGAATCAACAGAAGAAACGACTGAAGGGCCGAGAAGAACTACAACGACTACAGATTTTACGGGAGAGGAAAGTATTCATTGAATTAATTCAACTGATTACTCAGGGCTCAAAATATAAGGTTCAACATTTAACATTTTTAGTTAAATATTTTCATTCAATATGAGAATAACTCTACAGATGTATTTTATCCTTCAGTTTCCATCAATGAATGATTATTCATTAAATATGTATATGCTTGAAGTATGAAACATTCGACTTGTATCAAAGAACACTGTGATATTTGTATGTAATAATAATTTCT]


>consensus_11136#1 TCTATTTATCGACAACTTCTCCATTGAAAACAATTCATGGGCATAAATATGATATGGATT ATGGAAATGGATTTATACCAGATAATTATGGTAATCATGATAACCATGATGATCAAGAGT ATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTA ATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAATGAAA AGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGAGAATATAATGATCGATATTATA GACCACGTGATGAGCCGGATATCGAATCAACAGAAGAAACGACTGAAGGGCCGAGAAGAA CTACAACGACTACAGATTTTACGGGAGAGGAAAGTATTCATTGAATTAATTCAACTGATT ACTCAGGGCTCAAAATATAAGGTTCAACATTTAACATTTTTAGTTAAATATTTTCATTCA ATATGAGAATAACTCTACAGATGTATTTTATCCTTCAGTTTCCATCAATGAATGATTATT CATTAAATATGTATATGCTTGAAGTATGAAACATTCGACTTGTATCAAAGAACACTGTGA TATTTGTATGTAATAATAATTTCT



consensusID : consensus_11136#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence
                              [CATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATCCAATGAATATTATAAAGATAATGAAGAAGAAGAGGAAGGTGGAGAATATAATGATCGATATTATAGACCACGTGATGAGCCGGATATCGAATCAACAGAAGAAACGACTGAAGGGCCGAGAAGAACTACAACGACTCCAATTTTTATGGGAGAGTAAAGTATTCATCTACTAATTCAGAGTATTCAGATAATGAATTTAAAAAAATCAACATGTAAATGAGTTAACTGACATTTTTAATGATCTAATATCATGAATATTTGTTGTACGATTTAATAAAACAATACCGTCATCAAATATAATTTTTTTAAGAGTTCCAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA]

[-] EMBL AI976060             [CATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATCCAATGAATATTATAAAGATAATGAAGAAGAAGAGGAAGGTGGAGAATATAATGATCGATATTATAGACCACGTGATGAGCCGGATATCGAATCAACAGAAGAAACGACTGAAGGGCCGAGAAGAACTACAACGACTCCAATTTTTATGGGAGAGTAAAGTATTCATCTACTAATTCAGAGTATTCAGATAATGAATTTAAAAAAATCAACATGTAAATGAGTTAACTGACATTTTTAATGATCTAATATCATGAATATTTGTTGTACGATTTAATAAAACAATACCGTCATCAAATATAATTTTTTTAAGAGTTCCAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA]


>consensus_11136#2 CATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATCC AATGAATATTATAAAGATAATGAAGAAGAAGAGGAAGGTGGAGAATATAATGATCGATAT TATAGACCACGTGATGAGCCGGATATCGAATCAACAGAAGAAACGACTGAAGGGCCGAGA AGAACTACAACGACTCCAATTTTTATGGGAGAGTAAAGTATTCATCTACTAATTCAGAGT ATTCAGATAATGAATTTAAAAAAATCAACATGTAAATGAGTTAACTGACATTTTTAATGA TCTAATATCATGAATATTTGTTGTACGATTTAATAAAACAATACCGTCATCAAATATAAT TTTTTTAAGAGTTCCAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTA CCGTACTGCGTA



consensusID : consensus_11136#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 326
fasta sequence
                              [TTATTATATAATAGGAATAATAATATATATTACTTCAATGAATTCAATTTATACNCATTCTAATTATCGTTATAATGGATTTATGGATCAATCTAAAAAAGATTCATATGAGGCTATTAACTTTCCATTGAAAACAATTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATACCANATAATTATGGTAATCATGATAACCATGATGATCAAGANTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTTATTTAACCAAACCATTCATTGCTTAANTTAAAAGAACTGAAN]

[+] EMBL AI111039             [TTATTATATAATAGGAATAATAATATATATTACTTCAATGAATTCAATTTATACNCATTCTAATTATCGTTATAATGGATTTATGGATCAATCTAAAAAAGATTCATATGAGGCTATTAACTTTCCATTGAAAACAATTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTATACCANATAATTATGGTAATCATGATAACCATGATGATCAAGANTATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTTATTTAACCAAACCATTCATTGCTTAANTTAAAAGAACTGAAN]


>consensus_11136#3 TTATTATATAATAGGAATAATAATATATATTACTTCAATGAATTCAATTTATACNCATTC TAATTATCGTTATAATGGATTTATGGATCAATCTAAAAAAGATTCATATGAGGCTATTAA CTTTCCATTGAAAACAATTCATGGGCATAAATATGATATGGATTATGGAAATGGATTTAT ACCANATAATTATGGTAATCATGATAACCATGATGATCAAGANTATGATTCATATCATAG TAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTTATTTAACCAAACCATT CATTGCTTAANTTAAAAGAACTGAAN



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11136#0      ---GCCAAAATTTCGGTACGAGGCATA--TATATTACTTCAATGAATTCAATTTATACAC 55
consensus_11136#3      -TTATTATATAATAGGAATAATA-ATA--TATATTACTTCAATGAATTCAATTTATACNC 56
consensus_11136#1      ------------------------------------------------------------
consensus_11136#2      CATGTTAATTTAGCAGAACAATCAATGCGTAAATTAAAAGAACTGAAACATCGTAAATCC 60
                                                                                   

consensus_11136#0      ATTCTA-ATTATCGTTATAATGGATTTATGGATCAATCTAAAAAAGATTCATAT-GAGGC 113
consensus_11136#3      ATTCTA-ATTATCGTTATAATGGATTTATGGATCAATCTAAAAAAGATTCATAT-GAGGC 114
consensus_11136#1      -------------------------------------------------TCTAT-TTATC 10
consensus_11136#2      AATGAATATTATAAAGATAATGAAGAAGAAGAGGAAGGTGGAGAATATAATGATCGATAT 120
                                                                           **      

consensus_11136#0      TATTAACTTTCATTTGAA---AACAATTCATGGGCATAAATATGATATGGATTATGGAAA 170
consensus_11136#3      TATTAACTTTCCATTGAA---AACAATTCATGGGCATAAATATGATATGGATTATGGAAA 171
consensus_11136#1      GACAACTTCTCCATTGAA---AACAATTCATGGGCATAAATATGATATGGATTATGGAAA 67
consensus_11136#2      TATAGACCACGTGATGAGCCGGATATCGAATCAACAGAAGAAACGACTGAAGGGCCGAGA 180
                        *            ***     * *    **   ** **  *     ** *     ** *

consensus_11136#0      TGGATTTATACCA----GATAATTATGGTA-ATCATGATAACCAT--GATGATCAAGAGT 223
consensus_11136#3      TGGATTTATACCA----NATAATTATGGTA-ATCATGATAACCAT--GATGATCAAGANT 224
consensus_11136#1      TGGATTTATACCA----GATAATTATGGTA-ATCATGATAACCAT--GATGATCAAGAGT 120
consensus_11136#2      AGAACTACAACGACTCCAATTTTTATGGGAGAGTAAAGTATTCATCTACTAATTCAGAGT 240
                        * * *   ** *     **  ****** * *  *   **  ***    * **  *** *

consensus_11136#0      ATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTA 283
consensus_11136#3      ATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTT 284
consensus_11136#1      ATGATTCATATCATAGTAATGATTATGATGATGGTGAAGAGCACAATTATGGTCATGTTA 180
consensus_11136#2      ATT-CAGATAATGAATTTAAAAAAATCAACATGTAAATGAGTTAACTGACATTTTTAATG 299
                       **     ***    * * *  *  ** *  ***   * ***   * * *   *  *  * 

consensus_11136#0      ATTTAG---CAGAACAAT-CAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAAT 339
consensus_11136#3      ATTTAA---CCAAACCATTCATTGCTTAANTTAAAAGAACTGAAN--------------- 326
consensus_11136#1      ATTTAG---CAGAACAAT-CAATGCGTAAATTAAAAGAACTGAAACATCGTAAATACAAT 236
consensus_11136#2      ATCTAATATCATGAATATTTGTTGTACGATTTAATAAAACAATACCGTCATCAAATATAA 359
                       ** **    *   *  **    **    * **** * ***   *                

consensus_11136#0      GAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGAGAATATAATGATCGATAT 399
consensus_11136#3      ------------------------------------------------------------
consensus_11136#1      GAAAAGTATAAAGGTGATAATGAAGAAGAAGAGGAAGGTGGAGAATATAATGATCGATAT 296
consensus_11136#2      TTTTTTTAAGAGTTCCAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATT 419
                                                                                   

consensus_11136#0      TATAGACCACGTGATGAGCCGGATATCGAATCAACAGAAGAAACGACTGAAGGGCCGAGA 459
consensus_11136#3      ------------------------------------------------------------
consensus_11136#1      TATAGACCACGTGATGAGCCGGATATCGAATCAACAGAAGAAACGACTGAAGGGCCGAGA 356
consensus_11136#2      ACCGTACTGCGTA----------------------------------------------- 432
                                                                                   

consensus_11136#0      AGAACTACAACGACTACAGATTTTACGGGAGAGTAAAGTATTCATTGAATTAATTCAACT 519
consensus_11136#3      ------------------------------------------------------------
consensus_11136#1      AGAACTACAACGACTACAGATTTTACGGGAGAGGAAAGTATTCATTGAATTAATTCAACT 416
consensus_11136#2      ------------------------------------------------------------
                                                                                   

consensus_11136#0      GATTACTCAGGGCTCAAAATATAAGGTTCAACATTTAACATTTTTAGTTAAATATTTTCA 579
consensus_11136#3      ------------------------------------------------------------
consensus_11136#1      GATTACTCAGGGCTCAAAATATAAGGTTCAACATTTAACATTTTTAGTTAAATATTTTCA 476
consensus_11136#2      ------------------------------------------------------------
                                                                                   

consensus_11136#0      TTCAATATGAGAATAACTCTACAGATGTATCTTATCCTTCAGTTTCCATCAATGAATGAT 639
consensus_11136#3      ------------------------------------------------------------
consensus_11136#1      TTCAATATGAGAATAACTCTACAGATGTATTTTATCCTTCAGTTTCCATCAATGAATGAT 536
consensus_11136#2      ------------------------------------------------------------
                                                                                   

consensus_11136#0      TATTCATTAAATATGTATATGCTTGAAGTATGAAACATTCGACTTGTATCANA------- 692
consensus_11136#3      ------------------------------------------------------------
consensus_11136#1      TATTCATTAAATATGTATATGCTTGAAGTATGAAACATTCGACTTGTATCAAAGAACACT 596
consensus_11136#2      ------------------------------------------------------------
                                                                                   

consensus_11136#0      ----------------------------
consensus_11136#3      ----------------------------
consensus_11136#1      GTGATATTTGTATGTAATAATAATTTCT 624
consensus_11136#2      ----------------------------
                                                   




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)