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Schistosoma mansoni
cluster # 11140 cluster # 11140       Sequences # 36       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11140#0 length = 1388 sequences # 35  
consensus_11140#1 length = 530 sequences # 1  

consensusID : consensus_11140#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 35
consensus length = 1388
fasta sequence
                              [GATCCCTGCAACTTTAAATTGTTGTATCCCAAAGAAAATGGTTTTACTCAATCGATATTATGGAATTCTAAACATTTTAATGATAATAAAAGTTGCAGTCAGTTTTCTCATCCATTTAACAATGTTTCTGATGATCGTCATCGTCGTACATCTGGTCCAGGCATGCAGAATAAA-TAACAAGTGAACATAGTAGCTTGGAAAATGTATATCATGCTAACAGTGTCCCTTCCAGTTATCTAACTATCAATACTTCACCAATCAATTCATTGATAGACACTTCCCAAGGCCAGTATACATTTTCAGATAACTGGTGGGATAATCCTTCAGCATCACAAATTGTAGCTGACCTTTTGAGGGAAACACAACTTTCAGTTTCAGCTAACACTAGTATTCCTCCTAAGTCAGCATTATACCAGCCATGGCAATACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC-ACATGATCCCG-CAGTATT-AAAAAAGAAACCTGCTGCATATTTAAGAGCATCATATAGTCAA-GGAAATGTTGC-TTTTGTTCAGCTTG-AAAGT-AA-TTCAAATAT-GAAACCGAATAATTCAAACAACCAACTAGACAAATCTCAGCAGTCACCTCTTCCGTGTTCAAACAGCAAGTCATGTAATCAAAAAGTCAAATCAAACGACACTACTGGATCATCTCCAGACAATCGTTCAGAATGGAATAATACACACGCCAAGTCAAATCGTTGTCATCACCCACCAAGGCGTAATCGACGTTATATATCGAAGAGCCTTAGTGTTTGCATGGATGGTACAACAACAAACAATCCAGTCACTGGTATACTAAAAGAGGGAATTTCAATAAATCTTCATACTAATAAAATTAACGAACCTAAAAATGAGTTTATTACATCAAACTGGCTACTGTTGCCCGATGAATTATGGCTTGAAGTACTCCGATATTTAAGTCCAGTTGATCGTGTACGGGTTGCTCAAACTTGTCGACATTTGTCTAGACTTTCAATGGATCGTTCATTATGGCGAGTCATTCATCTTCATCGACAACACCATTTGACTGATGCAGATTTAGTGAGAATTGGAAATCTTAAACCAAAAGAATTACGTTTCACTTATTGTCGTGGTGATAGCCTAACTGCTACAGGGTTAAAACGCATGTTTCTA]

[-] EMBL CD160052             [GATCCCTGCAACTTTAAATTGTTGTATCCCAAAGAAAATGGTTTTACTCAATCGATATTATGGAATTCTAAACATTTTAATGATAATAAAAGTTGCAGTCAGTTTTCTCATCCATTTAACAATGTTTCTGATGATCGTCATCGTCGTACATCTGGTCCAGGCATGCAGAATAAATTAACAAGTGAACATAGTAGCTTGGAAAATGTATATCATGCTAACAGTGTCCCTTCCAGTTATCTAACTATCAATACTTCACCAATCAATTCATTGATAGACACTTCCCAAGGCCAGTATACATTTTCAGATAACTGGTGGGATAATCCTTCAGCATCACAAATTGTAGCTGACCTTTTGAGGGAAACACAACTTTCAGTTTCAGCTAACACTAGTATTCCTCCTAAGTCAGCATTGTACCAGCCATGGCAATACCAAGAAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD190033             [                                                                                                                                                                      gtacttgA TAACAAGTGATCATAGTAGCTGGGAAAATGTATATCATGCTAACAGTGTCCCTTCCAGTTATCTAACTATCAATACTTCACCAATCAATTCATTGATAGACACTTCCCAAGGCCAGTATACATTTTCAGATAACTGGTGGGATAATCCTTCAGCATCACAAATTGTAGCTGACCTTTTGAGGGAAACACAACTTTCAGTTTCAGCTAACACTAGTATTCCTCCTAAGTCAGCATTATACCAGCCATGGCAATACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD198902             [                                                                                                                                                                                                                                                                                                                                                                                                                      caggATACCAGCCATGGCAATACCAAGAAGTGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGGGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACTCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAGAAACCTGCTGCATATTTAAGAGCATCATATAGTCAA GGAAATGTTGC TTTTGTTCAGCTTG g                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD147017             [                                                                                                                                                                                                                                                                                                                                                                                                                                           ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAGAAACCTGCTGCATATTTAAGAGCATCATATAGTCAA GGAAATGTTGC TTTTGTTCAGCTTG AAAGT AA TTCAAATAT GAAACCGAATAATTCAAACAACCAACTAGACAAATCTCAGCAGTCACCTCTTCCGTGTTCAAACAGCAAGTCATGTAATCAAAAAGTCAAATCAAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD199146             [                                                                                                                                                                                                                                                                                                                                                                                                                                           ACCAAGAAGTGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGGGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATGATAATAACAGTGGTGTTGATTCATCANAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAGAAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD199120             [                                                                                                                                                                                                                                                                                                                                                                                                                                           ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAGGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATCCATCANAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGCNACATGAT CCG CAGTATT AAAAAga                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD198890             [                                                                                                                                                                                                                                                                                                                                                                                                                                           ACCAAGAAGTGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGCTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAGAAACCTGCTGCATATTTAAGAGCATCATATAGTCAA GGAAATGTTGC TTTTGTTCAGCTTG AAAGT AA TTCAAATATNGAACCCGAATAATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD199039             [                                                                                                                                                                                                                                                                                                                                                                                                                                           ACCAAGAAGTGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAGAAACCTGCTGCATATTTAAGAGCATCATATAGTCAA GGAAATGTTGC TTTTGTTCAGCTTG AAAGT AA TTC AATAT GAAACCGAAat                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD198967             [                                                                                                                                                                                                                                                                                                                                                                                                                                           ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCNCG CAGTATT AAAAAAG AACCTGCTGCATATTTAAGAGCATCATATAGTCAA GGAAATGTTGCTTTTTGTTCAGCTTG AAAGT AA TTCAAATATNGAAc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD198973             [                                                                                                                                                                                                                                                                                                                                                                                                                                           ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAGCACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTTAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAGAAACCTGCTGCATATTTAAGAGCATCATATAGTCAA GGAAATGTTGC TTTTGTTCAGCTTGNNAAGT AT TTC AATAT GAAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD198848             [                                                                                                                                                                                                                                                                                                                                                                                                                                           ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAG AACCTGCTGCATATTTAAGAGCATCATATAGTCAA GGAAATGTTGC TTTTGTTCAGCTTG AAAGT AATTTCAAATAT GAAcc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD198878             [                                                                                                                                                                                                                                                                                                                                                                                                                                           ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAGAAACCTGCTGCATATTTAAGAGCATCATATAGTCAA AGGAATGTTGC TTTTGTTCAGCTTG AAAGT  A TTCAAATATNGAAc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD198910             [                                                                                                                                                                                                                                                                                                                                                                                                                                           ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGCCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD199135             [                                                                                                                                                                                                                                                                                                                                                                                                                                           ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAGAAACCTGCTGCATATTTAAGAGCATCATATAGTCAA GGAAATGTTGC TTTTGTTCAGCTTG AAAGT AA TTTCAATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD198934             [                                                                                                                                                                                                                                                                                                                                                                                                                                           ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAGAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGga                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD198929             [                                                                                                                                                                                                                                                                                                                                                                                                                                           ACCAAGAAGTGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATATGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAG AACCTGCTGCATATTTAAGAGCATCATATAGTCAA GGAAATGTTGC TTTTGTTCAGCTTtt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD199062             [                                                                                                                                                                                                                                                                                                                                                                                                                                           ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAG AACCTGCTGCATATTTAAGAGCATCATATAGTCAA GGAAATGTTGC TTTTGTTCAGCTTt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD198875             [                                                                                                                                                                                                                                                                                                                                                                                                                                           ACCAAGAAGTGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAGTCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAGAAACCTGCTGCATATTTAAGAGCATCATATAGTCAA GGAAATGTTGC TTCTGTTCAGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD198957             [                                                                                                                                                                                                                                                                                                                                                                                                                                           ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAGAAACCTGCTGCATATTTAAGAGCATCATATAGTCAA GGAAATGTTGC TTTTTGTCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD199043             [                                                                                                                                                                                                                                                                                                                                                                                                                                           ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT  AGAAAGAGACCTGCTGCATATTGTAGAGCATCATATAGTCAA GGAAATGTTGC TT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD199159             [                                                                                                                                                                                                                                                                                                                                                                                                                                           ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAGAAACCTGCTGCATATNTAAGAGCATCATATAGTCNA G                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD199136             [                                                                                                                                                                                                                                                                                                                                                                                                                                           ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAG AACCTGCTGCATATTTAAGAGCATCATATAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD199108             [                                                                                                                                                                                                                                                                                                                                                                                                                                           ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCANAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAG AACCTGCTGCATATTTAAGAGCATCATATAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD199115             [                                                                                                                                                                                                                                                                                                                                                                                                                                           ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGACTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCNCG CAGTATT AAAAAAG AACCTGCTGCATATNTNAGAGCATCATATAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD199117             [                                                                                                                                                                                                                                                                                                                                                                                                                                           ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCANAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAG AACCTGCTGCATATNTNAGAGCATCATATAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD199149             [                                                                                                                                                                                                                                                                                                                                                                                                                                           ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCANAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAGAAA CTGCTGCATATNTAAGAGCATCATAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD199138             [                                                                                                                                                                                                                                                                                                                                                                                                                                           ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAGAAACCTGCTGCATATTTNAGAGCATCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD199131             [                                                                                                                                                                                                                                                                                                                                                                                                                                           ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCANAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGNTCAGC ACATGATCCCG CAGTATT AAAAAAG AACCTGCTGCATATNTAAGAGCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD199082             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAGAAACCTGCTGCATATTTAAGAGCATCATATAGTCAA GGAAATGTTGC TTTGTTTCAGCTGN AAAGT AA TTCAAATAT GAAACCGAATAATTCAAACANCCAACTAGACAAATCTCAGCAGTCACCTCTTCCGTGTTCAAACAGCAAGTCATGTAATCAAAAAGTCAAATCAAACGACACTACTGGATCATCTCCAGACAATCGTTCAGAAAGGAATAATACACACGCCAAGTCAAATCGTTGTCATCACCCACCAAGGCGTAATCGACGTTATATATCGAAGAGCCTTAGTGTTTGCATGGATGGTACAACAACAAAC                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD198887             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CAGC ACATGATCCCGNCAGTATTAAAAAAAGAAACCTGCTGCATATTTAAGAGCATCATATAGTCAA GGAAATGTTGC TTTTGTTCAGCTTG AAAGT AA TTCAAATAT GAAACCGAATAATTCAAACAACCAACTAGACAAATCTCAGCAGTCACCTCTTCCGTGTTCAAACAGCAAGTCATGTAATCAAAAAGTCAAATCAAACGACACTACTGGATCATCTCCAGACAATCGTTCAGAATGGAATAATACACACGCCAAGTCAAATCGTTGTCATCACCCACCAAGGCGTAATCGACGTTATATATCGAAGAGCCTTAGTGTTTGCATGGATGGTACAACAACAAAC                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD199070             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ATAGTCAAGGGAAATGTTGC TTTGTTTCAGC TG AAAGTAAA TTCAAATAT GAANCCGAATAATTCAAACAACCAACTAGACAAATCTCAGCAGTCACCTCTTCCGTGTTCAAACAGCAAGTCATGTAATCAAAAAGTCAAATCAAACGACACTACTGGATCATCTCCAGACAATCGTTCAGAATGGAATAATACACACGCCAAGTCAAATCGTTGTCATCACCCACCAAGGCGTAATCGACGTTATATATCGAAGAGCCTTAGTGTTTGCATGGATGGTACAACAACAAAC                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD199087             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ACAACCANCTAGACAAATCTCAGCAGTCACCTCTTCCGTGTTCAAACAGCAAGTCATGTAATCAAAAAGTCAAATCAAACGACTCTACTGGATCATCTCCAGACAATCGTTCAGAATGGAATAATACACACGCCAAGTCAAATCGTTGTCATCACCCACCAAGGCGTAATCGACGTTATATATCGAAGAGCCTTAGTGTTTGCATGGATGGTACAACAACAAAC                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD196011             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AAGTCAAATCAAACGACACTACTGGATCATCTCCAGACAATCGTTCAGAATGGAACAATACACACGCCAAGTCAAATCGTCGTCATCACCCACCAAGGCGTAATCGACGTTATATATCGAAGAGCCTTAGAGTTTGCATGGATGGTACAACAACAAACAATCCAGTCACTGGTATACTAAAAGAGGGAATTTCAATAAATCTTCATACTAATAAAATTAACGAACCTAAAAATGAGTTTATTACATCAAACTGGCTACTGTTGCCCGATGAATTATGGCTTGAAGTACT                                                                                                                                                                                                                                  ]
[+] EMBL AI975029             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AACGACACTACTGGATCATCTCCAGACAATCGTTCAGAATGGAATAATACACACGCCAAGTCAAATCGTTGTCATCACCCACCAAGGCGTAATCGATGTTATATATCGAAGAGCCTTAGTATTTGCATGGATGGTACAACAACAAACAATCCAGTCACTGGTATACTAAAAGAGGGAATTTCAATAAATCTTCATACTAATAAAATTAACGAACCTAAAAATGAGTTTATTACATCAAACTGGCTACTGTTGCCCGATGAATTATGGCTTGAAGTACTCCGATATTTAAGTCCAGTTGATCGTGTACGGGTTGCTCAAACTTGTCGACATTTGTCTAGACTTTCAATGGATCGTTCATTATGGCGAGTCATTCATCTTCATCGACAACACCATTTGACTGATGCAGATTTAGTGAGAATTGGAAATCTTAAACCAAAAGAATTACGTT                                                        ]
[-] EMBL CD188715             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TTATATATCGAAGAGCCTTAGTGTTTGCATGGATGGTACAACAACAAACAATCCAGTCACTGGTATACTAAAAGAGGGAATTTCAATAAATCTTCATACTAATAAAATTAACGAACCTAAAAATGAGTTTATTACATCAAACTGGCTACTGTTGCCCGATGAATTATGGCTTGAAGTACTCCGATATTTAAGTCCAGTTGATCGTGTACGGGTTGCTCAAACTTGTCGACATTTGTCTAGACTTTCAATGGATCGTTCATTATGGCGAGTCATTCATCTTCATCGACAACACCATTTGACTGATGCAGATTTAGTGAGAATTGGAAATCTTAAACCAAAAGAATTACGTTTCACTTATTGTCGTGGTGATAGCCTAACTGCTACAGGGTTAAAACGCATGTTTCTA]


>consensus_11140#0 GATCCCTGCAACTTTAAATTGTTGTATCCCAAAGAAAATGGTTTTACTCAATCGATATTA TGGAATTCTAAACATTTTAATGATAATAAAAGTTGCAGTCAGTTTTCTCATCCATTTAAC AATGTTTCTGATGATCGTCATCGTCGTACATCTGGTCCAGGCATGCAGAATAAATAACAA GTGAACATAGTAGCTTGGAAAATGTATATCATGCTAACAGTGTCCCTTCCAGTTATCTAA CTATCAATACTTCACCAATCAATTCATTGATAGACACTTCCCAAGGCCAGTATACATTTT CAGATAACTGGTGGGATAATCCTTCAGCATCACAAATTGTAGCTGACCTTTTGAGGGAAA CACAACTTTCAGTTTCAGCTAACACTAGTATTCCTCCTAAGTCAGCATTATACCAGCCAT GGCAATACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTG TTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGC TCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAG ATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATT GGCAGTCATCTAGAACAGCCTGGTCAGCACATGATCCCGCAGTATTAAAAAAGAAACCTG CTGCATATTTAAGAGCATCATATAGTCAAGGAAATGTTGCTTTTGTTCAGCTTGAAAGTA ATTCAAATATGAAACCGAATAATTCAAACAACCAACTAGACAAATCTCAGCAGTCACCTC TTCCGTGTTCAAACAGCAAGTCATGTAATCAAAAAGTCAAATCAAACGACACTACTGGAT CATCTCCAGACAATCGTTCAGAATGGAATAATACACACGCCAAGTCAAATCGTTGTCATC ACCCACCAAGGCGTAATCGACGTTATATATCGAAGAGCCTTAGTGTTTGCATGGATGGTA CAACAACAAACAATCCAGTCACTGGTATACTAAAAGAGGGAATTTCAATAAATCTTCATA CTAATAAAATTAACGAACCTAAAAATGAGTTTATTACATCAAACTGGCTACTGTTGCCCG ATGAATTATGGCTTGAAGTACTCCGATATTTAAGTCCAGTTGATCGTGTACGGGTTGCTC AAACTTGTCGACATTTGTCTAGACTTTCAATGGATCGTTCATTATGGCGAGTCATTCATC TTCATCGACAACACCATTTGACTGATGCAGATTTAGTGAGAATTGGAAATCTTAAACCAA AAGAATTACGTTTCACTTATTGTCGTGGTGATAGCCTAACTGCTACAGGGTTAAAACGCA TGTTTCTA



consensusID : consensus_11140#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 530
fasta sequence
                              [ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAANAGTGTTCGCGTACGTGGTGGATATCGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACACTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGCACATGATCCCGCAGTATTAAAAAAGAAGAAACCGAATAATTCAAACAACCAACTAGACAAATCTCAGCAGTCACCTCTTCCGTGTTCAAACAGCAAGTCATGTAATCAAAAAGTCAAATCAAACGACACTACTGGATCATCTCCAGACAATCGTTCAGAATGGAATAATACACACGCCGAGTCAAATCGTTGTCATCACCCACCAAGGCGTAATCGACGTTATATATCGAAGAGCCTTAGTGTTTGCATGGATGGTACAACAACAAAC]

[-] EMBL CD096299             [ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAANAGTGTTCGCGTACGTGGTGGATATCGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACACTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGCACATGATCCCGCAGTATTAAAAAAGAAGAAACCGAATAATTCAAACAACCAACTAGACAAATCTCAGCAGTCACCTCTTCCGTGTTCAAACAGCAAGTCATGTAATCAAAAAGTCAAATCAAACGACACTACTGGATCATCTCCAGACAATCGTTCAGAATGGAATAATACACACGCCGAGTCAAATCGTTGTCATCACCCACCAAGGCGTAATCGACGTTATATATCGAAGAGCCTTAGTGTTTGCATGGATGGTACAACAACAAAC]


>consensus_11140#1 ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAANAGTGTTCGCG TACGTGGTGGATATCGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATA ATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTG AAGATAATAATAACACTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGT CATCTAGAACAGCCTGGTCAGCACATGATCCCGCAGTATTAAAAAAGAAGAAACCGAATA ATTCAAACAACCAACTAGACAAATCTCAGCAGTCACCTCTTCCGTGTTCAAACAGCAAGT CATGTAATCAAAAAGTCAAATCAAACGACACTACTGGATCATCTCCAGACAATCGTTCAG AATGGAATAATACACACGCCGAGTCAAATCGTTGTCATCACCCACCAAGGCGTAATCGAC GTTATATATCGAAGAGCCTTAGTGTTTGCATGGATGGTACAACAACAAAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11140#0      GATCCCTGCAACTTTAAATTGTTGTATCCCAAAGAAAATGGTTTTACTCAATCGATATTA 60
consensus_11140#1      ------------------------------------------------------------
                                                                                   

consensus_11140#0      TGGAATTCTAAACATTTTAATGATAATAAAAGTTGCAGTCAGTTTTCTCATCCATTTAAC 120
consensus_11140#1      ------------------------------------------------------------
                                                                                   

consensus_11140#0      AATGTTTCTGATGATCGTCATCGTCGTACATCTGGTCCAGGCATGCAGAATAAATAACAA 180
consensus_11140#1      ------------------------------------------------------------
                                                                                   

consensus_11140#0      GTGAACATAGTAGCTTGGAAAATGTATATCATGCTAACAGTGTCCCTTCCAGTTATCTAA 240
consensus_11140#1      ------------------------------------------------------------
                                                                                   

consensus_11140#0      CTATCAATACTTCACCAATCAATTCATTGATAGACACTTCCCAAGGCCAGTATACATTTT 300
consensus_11140#1      ------------------------------------------------------------
                                                                                   

consensus_11140#0      CAGATAACTGGTGGGATAATCCTTCAGCATCACAAATTGTAGCTGACCTTTTGAGGGAAA 360
consensus_11140#1      ------------------------------------------------------------
                                                                                   

consensus_11140#0      CACAACTTTCAGTTTCAGCTAACACTAGTATTCCTCCTAAGTCAGCATTATACCAGCCAT 420
consensus_11140#1      ------------------------------------------------------------
                                                                                   

consensus_11140#0      GGCAATACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTG 480
consensus_11140#1      ------ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAANAGTG 54
                             ************************************************* ****

consensus_11140#0      TTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGC 540
consensus_11140#1      TTCGCGTACGTGGTGGATATCGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGC 114
                       ***** ************** ***************************************

consensus_11140#0      TCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAG 600
consensus_11140#1      TCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAG 174
                       ************************************************************

consensus_11140#0      ATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATT 660
consensus_11140#1      ATTTTGAAGATAATAATAACACTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATT 234
                       ********************* **************************************

consensus_11140#0      GGCAGTCATCTAGAACAGCCTGGTCAGCACATGATCCCGCAGTATTAAAAAAGAAACCTG 720
consensus_11140#1      GGCAGTCATCTAGAACAGCCTGGTCAGCACATGATCCCGCAGTATTAAAAAAGAA----- 289
                       *******************************************************     

consensus_11140#0      CTGCATATTTAAGAGCATCATATAGTCAAGGAAATGTTGCTTTTGTTCAGCTTGAAAGTA 780
consensus_11140#1      ------------------------------------------------------------
                                                                                   

consensus_11140#0      ATTCAAATATGAAACCGAATAATTCAAACAACCAACTAGACAAATCTCAGCAGTCACCTC 840
consensus_11140#1      ----------GAAACCGAATAATTCAAACAACCAACTAGACAAATCTCAGCAGTCACCTC 339
                                 **************************************************

consensus_11140#0      TTCCGTGTTCAAACAGCAAGTCATGTAATCAAAAAGTCAAATCAAACGACACTACTGGAT 900
consensus_11140#1      TTCCGTGTTCAAACAGCAAGTCATGTAATCAAAAAGTCAAATCAAACGACACTACTGGAT 399
                       ************************************************************

consensus_11140#0      CATCTCCAGACAATCGTTCAGAATGGAATAATACACACGCCAAGTCAAATCGTTGTCATC 960
consensus_11140#1      CATCTCCAGACAATCGTTCAGAATGGAATAATACACACGCCGAGTCAAATCGTTGTCATC 459
                       ***************************************** ******************

consensus_11140#0      ACCCACCAAGGCGTAATCGACGTTATATATCGAAGAGCCTTAGTGTTTGCATGGATGGTA 1020
consensus_11140#1      ACCCACCAAGGCGTAATCGACGTTATATATCGAAGAGCCTTAGTGTTTGCATGGATGGTA 519
                       ************************************************************

consensus_11140#0      CAACAACAAACAATCCAGTCACTGGTATACTAAAAGAGGGAATTTCAATAAATCTTCATA 1080
consensus_11140#1      CAACAACAAAC------------------------------------------------- 530
                       ***********                                                 

consensus_11140#0      CTAATAAAATTAACGAACCTAAAAATGAGTTTATTACATCAAACTGGCTACTGTTGCCCG 1140
consensus_11140#1      ------------------------------------------------------------
                                                                                   

consensus_11140#0      ATGAATTATGGCTTGAAGTACTCCGATATTTAAGTCCAGTTGATCGTGTACGGGTTGCTC 1200
consensus_11140#1      ------------------------------------------------------------
                                                                                   

consensus_11140#0      AAACTTGTCGACATTTGTCTAGACTTTCAATGGATCGTTCATTATGGCGAGTCATTCATC 1260
consensus_11140#1      ------------------------------------------------------------
                                                                                   

consensus_11140#0      TTCATCGACAACACCATTTGACTGATGCAGATTTAGTGAGAATTGGAAATCTTAAACCAA 1320
consensus_11140#1      ------------------------------------------------------------
                                                                                   

consensus_11140#0      AAGAATTACGTTTCACTTATTGTCGTGGTGATAGCCTAACTGCTACAGGGTTAAAACGCA 1380
consensus_11140#1      ------------------------------------------------------------
                                                                                   

consensus_11140#0      TGTTTCTA 1388
consensus_11140#1      --------
                               




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)