These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11140#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 35 consensus length = 1388 fasta sequence [GATCCCTGCAACTTTAAATTGTTGTATCCCAAAGAAAATGGTTTTACTCAATCGATATTATGGAATTCTAAACATTTTAATGATAATAAAAGTTGCAGTCAGTTTTCTCATCCATTTAACAATGTTTCTGATGATCGTCATCGTCGTACATCTGGTCCAGGCATGCAGAATAAA-TAACAAGTGAACATAGTAGCTTGGAAAATGTATATCATGCTAACAGTGTCCCTTCCAGTTATCTAACTATCAATACTTCACCAATCAATTCATTGATAGACACTTCCCAAGGCCAGTATACATTTTCAGATAACTGGTGGGATAATCCTTCAGCATCACAAATTGTAGCTGACCTTTTGAGGGAAACACAACTTTCAGTTTCAGCTAACACTAGTATTCCTCCTAAGTCAGCATTATACCAGCCATGGCAATACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC-ACATGATCCCG-CAGTATT-AAAAAAGAAACCTGCTGCATATTTAAGAGCATCATATAGTCAA-GGAAATGTTGC-TTTTGTTCAGCTTG-AAAGT-AA-TTCAAATAT-GAAACCGAATAATTCAAACAACCAACTAGACAAATCTCAGCAGTCACCTCTTCCGTGTTCAAACAGCAAGTCATGTAATCAAAAAGTCAAATCAAACGACACTACTGGATCATCTCCAGACAATCGTTCAGAATGGAATAATACACACGCCAAGTCAAATCGTTGTCATCACCCACCAAGGCGTAATCGACGTTATATATCGAAGAGCCTTAGTGTTTGCATGGATGGTACAACAACAAACAATCCAGTCACTGGTATACTAAAAGAGGGAATTTCAATAAATCTTCATACTAATAAAATTAACGAACCTAAAAATGAGTTTATTACATCAAACTGGCTACTGTTGCCCGATGAATTATGGCTTGAAGTACTCCGATATTTAAGTCCAGTTGATCGTGTACGGGTTGCTCAAACTTGTCGACATTTGTCTAGACTTTCAATGGATCGTTCATTATGGCGAGTCATTCATCTTCATCGACAACACCATTTGACTGATGCAGATTTAGTGAGAATTGGAAATCTTAAACCAAAAGAATTACGTTTCACTTATTGTCGTGGTGATAGCCTAACTGCTACAGGGTTAAAACGCATGTTTCTA] [-] EMBL CD160052 [GATCCCTGCAACTTTAAATTGTTGTATCCCAAAGAAAATGGTTTTACTCAATCGATATTATGGAATTCTAAACATTTTAATGATAATAAAAGTTGCAGTCAGTTTTCTCATCCATTTAACAATGTTTCTGATGATCGTCATCGTCGTACATCTGGTCCAGGCATGCAGAATAAATTAACAAGTGAACATAGTAGCTTGGAAAATGTATATCATGCTAACAGTGTCCCTTCCAGTTATCTAACTATCAATACTTCACCAATCAATTCATTGATAGACACTTCCCAAGGCCAGTATACATTTTCAGATAACTGGTGGGATAATCCTTCAGCATCACAAATTGTAGCTGACCTTTTGAGGGAAACACAACTTTCAGTTTCAGCTAACACTAGTATTCCTCCTAAGTCAGCATTGTACCAGCCATGGCAATACCAAGAAAT ] [+] EMBL CD190033 [ gtacttgA TAACAAGTGATCATAGTAGCTGGGAAAATGTATATCATGCTAACAGTGTCCCTTCCAGTTATCTAACTATCAATACTTCACCAATCAATTCATTGATAGACACTTCCCAAGGCCAGTATACATTTTCAGATAACTGGTGGGATAATCCTTCAGCATCACAAATTGTAGCTGACCTTTTGAGGGAAACACAACTTTCAGTTTCAGCTAACACTAGTATTCCTCCTAAGTCAGCATTATACCAGCCATGGCAATACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCA ] [+] EMBL CD198902 [ caggATACCAGCCATGGCAATACCAAGAAGTGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGGGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACTCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAGAAACCTGCTGCATATTTAAGAGCATCATATAGTCAA GGAAATGTTGC TTTTGTTCAGCTTG g ] [+] EMBL CD147017 [ ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAGAAACCTGCTGCATATTTAAGAGCATCATATAGTCAA GGAAATGTTGC TTTTGTTCAGCTTG AAAGT AA TTCAAATAT GAAACCGAATAATTCAAACAACCAACTAGACAAATCTCAGCAGTCACCTCTTCCGTGTTCAAACAGCAAGTCATGTAATCAAAAAGTCAAATCAAAC ] [+] EMBL CD199146 [ ACCAAGAAGTGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGGGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATGATAATAACAGTGGTGTTGATTCATCANAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAGAAAC ] [+] EMBL CD199120 [ ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAGGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATCCATCANAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGCNACATGAT CCG CAGTATT AAAAAga ] [+] EMBL CD198890 [ ACCAAGAAGTGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGCTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAGAAACCTGCTGCATATTTAAGAGCATCATATAGTCAA GGAAATGTTGC TTTTGTTCAGCTTG AAAGT AA TTCAAATATNGAACCCGAATAATT ] [+] EMBL CD199039 [ ACCAAGAAGTGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAGAAACCTGCTGCATATTTAAGAGCATCATATAGTCAA GGAAATGTTGC TTTTGTTCAGCTTG AAAGT AA TTC AATAT GAAACCGAAat ] [+] EMBL CD198967 [ ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCNCG CAGTATT AAAAAAG AACCTGCTGCATATTTAAGAGCATCATATAGTCAA GGAAATGTTGCTTTTTGTTCAGCTTG AAAGT AA TTCAAATATNGAAc ] [+] EMBL CD198973 [ ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAGCACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTTAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAGAAACCTGCTGCATATTTAAGAGCATCATATAGTCAA GGAAATGTTGC TTTTGTTCAGCTTGNNAAGT AT TTC AATAT GAAAC ] [+] EMBL CD198848 [ ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAG AACCTGCTGCATATTTAAGAGCATCATATAGTCAA GGAAATGTTGC TTTTGTTCAGCTTG AAAGT AATTTCAAATAT GAAcc ] [+] EMBL CD198878 [ ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAGAAACCTGCTGCATATTTAAGAGCATCATATAGTCAA AGGAATGTTGC TTTTGTTCAGCTTG AAAGT A TTCAAATATNGAAc ] [+] EMBL CD198910 [ ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGCCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT ] [+] EMBL CD199135 [ ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAGAAACCTGCTGCATATTTAAGAGCATCATATAGTCAA GGAAATGTTGC TTTTGTTCAGCTTG AAAGT AA TTTCAATA ] [+] EMBL CD198934 [ ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAGAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGga ] [+] EMBL CD198929 [ ACCAAGAAGTGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATATGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAG AACCTGCTGCATATTTAAGAGCATCATATAGTCAA GGAAATGTTGC TTTTGTTCAGCTTtt ] [+] EMBL CD199062 [ ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAG AACCTGCTGCATATTTAAGAGCATCATATAGTCAA GGAAATGTTGC TTTTGTTCAGCTTt ] [+] EMBL CD198875 [ ACCAAGAAGTGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAGTCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAGAAACCTGCTGCATATTTAAGAGCATCATATAGTCAA GGAAATGTTGC TTCTGTTCAGCT ] [+] EMBL CD198957 [ ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAGAAACCTGCTGCATATTTAAGAGCATCATATAGTCAA GGAAATGTTGC TTTTTGTCAG ] [+] EMBL CD199043 [ ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AGAAAGAGACCTGCTGCATATTGTAGAGCATCATATAGTCAA GGAAATGTTGC TT ] [+] EMBL CD199159 [ ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAGAAACCTGCTGCATATNTAAGAGCATCATATAGTCNA G ] [+] EMBL CD199136 [ ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAG AACCTGCTGCATATTTAAGAGCATCATATAGT ] [+] EMBL CD199108 [ ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCANAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAG AACCTGCTGCATATTTAAGAGCATCATATAGT ] [+] EMBL CD199115 [ ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGACTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCNCG CAGTATT AAAAAAG AACCTGCTGCATATNTNAGAGCATCATATAG ] [+] EMBL CD199117 [ ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCANAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAG AACCTGCTGCATATNTNAGAGCATCATATAG ] [+] EMBL CD199149 [ ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCANAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAGAAA CTGCTGCATATNTAAGAGCATCATAT ] [+] EMBL CD199138 [ ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAGAAACCTGCTGCATATTTNAGAGCATCAT ] [+] EMBL CD199131 [ ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTGTTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCANAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGNTCAGC ACATGATCCCG CAGTATT AAAAAAG AACCTGCTGCATATNTAAGAGCAT ] [-] EMBL CD199082 [ TCATCTAGAACAGCCTGGTCAGC ACATGATCCCG CAGTATT AAAAAAGAAACCTGCTGCATATTTAAGAGCATCATATAGTCAA GGAAATGTTGC TTTGTTTCAGCTGN AAAGT AA TTCAAATAT GAAACCGAATAATTCAAACANCCAACTAGACAAATCTCAGCAGTCACCTCTTCCGTGTTCAAACAGCAAGTCATGTAATCAAAAAGTCAAATCAAACGACACTACTGGATCATCTCCAGACAATCGTTCAGAAAGGAATAATACACACGCCAAGTCAAATCGTTGTCATCACCCACCAAGGCGTAATCGACGTTATATATCGAAGAGCCTTAGTGTTTGCATGGATGGTACAACAACAAAC ] [-] EMBL CD198887 [ CAGC ACATGATCCCGNCAGTATTAAAAAAAGAAACCTGCTGCATATTTAAGAGCATCATATAGTCAA GGAAATGTTGC TTTTGTTCAGCTTG AAAGT AA TTCAAATAT GAAACCGAATAATTCAAACAACCAACTAGACAAATCTCAGCAGTCACCTCTTCCGTGTTCAAACAGCAAGTCATGTAATCAAAAAGTCAAATCAAACGACACTACTGGATCATCTCCAGACAATCGTTCAGAATGGAATAATACACACGCCAAGTCAAATCGTTGTCATCACCCACCAAGGCGTAATCGACGTTATATATCGAAGAGCCTTAGTGTTTGCATGGATGGTACAACAACAAAC ] [-] EMBL CD199070 [ ATAGTCAAGGGAAATGTTGC TTTGTTTCAGC TG AAAGTAAA TTCAAATAT GAANCCGAATAATTCAAACAACCAACTAGACAAATCTCAGCAGTCACCTCTTCCGTGTTCAAACAGCAAGTCATGTAATCAAAAAGTCAAATCAAACGACACTACTGGATCATCTCCAGACAATCGTTCAGAATGGAATAATACACACGCCAAGTCAAATCGTTGTCATCACCCACCAAGGCGTAATCGACGTTATATATCGAAGAGCCTTAGTGTTTGCATGGATGGTACAACAACAAAC ] [-] EMBL CD199087 [ ACAACCANCTAGACAAATCTCAGCAGTCACCTCTTCCGTGTTCAAACAGCAAGTCATGTAATCAAAAAGTCAAATCAAACGACTCTACTGGATCATCTCCAGACAATCGTTCAGAATGGAATAATACACACGCCAAGTCAAATCGTTGTCATCACCCACCAAGGCGTAATCGACGTTATATATCGAAGAGCCTTAGTGTTTGCATGGATGGTACAACAACAAAC ] [+] EMBL CD196011 [ AAGTCAAATCAAACGACACTACTGGATCATCTCCAGACAATCGTTCAGAATGGAACAATACACACGCCAAGTCAAATCGTCGTCATCACCCACCAAGGCGTAATCGACGTTATATATCGAAGAGCCTTAGAGTTTGCATGGATGGTACAACAACAAACAATCCAGTCACTGGTATACTAAAAGAGGGAATTTCAATAAATCTTCATACTAATAAAATTAACGAACCTAAAAATGAGTTTATTACATCAAACTGGCTACTGTTGCCCGATGAATTATGGCTTGAAGTACT ] [+] EMBL AI975029 [ AACGACACTACTGGATCATCTCCAGACAATCGTTCAGAATGGAATAATACACACGCCAAGTCAAATCGTTGTCATCACCCACCAAGGCGTAATCGATGTTATATATCGAAGAGCCTTAGTATTTGCATGGATGGTACAACAACAAACAATCCAGTCACTGGTATACTAAAAGAGGGAATTTCAATAAATCTTCATACTAATAAAATTAACGAACCTAAAAATGAGTTTATTACATCAAACTGGCTACTGTTGCCCGATGAATTATGGCTTGAAGTACTCCGATATTTAAGTCCAGTTGATCGTGTACGGGTTGCTCAAACTTGTCGACATTTGTCTAGACTTTCAATGGATCGTTCATTATGGCGAGTCATTCATCTTCATCGACAACACCATTTGACTGATGCAGATTTAGTGAGAATTGGAAATCTTAAACCAAAAGAATTACGTT ] [-] EMBL CD188715 [ TTATATATCGAAGAGCCTTAGTGTTTGCATGGATGGTACAACAACAAACAATCCAGTCACTGGTATACTAAAAGAGGGAATTTCAATAAATCTTCATACTAATAAAATTAACGAACCTAAAAATGAGTTTATTACATCAAACTGGCTACTGTTGCCCGATGAATTATGGCTTGAAGTACTCCGATATTTAAGTCCAGTTGATCGTGTACGGGTTGCTCAAACTTGTCGACATTTGTCTAGACTTTCAATGGATCGTTCATTATGGCGAGTCATTCATCTTCATCGACAACACCATTTGACTGATGCAGATTTAGTGAGAATTGGAAATCTTAAACCAAAAGAATTACGTTTCACTTATTGTCGTGGTGATAGCCTAACTGCTACAGGGTTAAAACGCATGTTTCTA] consensusID : consensus_11140#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence [ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAANAGTGTTCGCGTACGTGGTGGATATCGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACACTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGCACATGATCCCGCAGTATTAAAAAAGAAGAAACCGAATAATTCAAACAACCAACTAGACAAATCTCAGCAGTCACCTCTTCCGTGTTCAAACAGCAAGTCATGTAATCAAAAAGTCAAATCAAACGACACTACTGGATCATCTCCAGACAATCGTTCAGAATGGAATAATACACACGCCGAGTCAAATCGTTGTCATCACCCACCAAGGCGTAATCGACGTTATATATCGAAGAGCCTTAGTGTTTGCATGGATGGTACAACAACAAAC] [-] EMBL CD096299 [ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAANAGTGTTCGCGTACGTGGTGGATATCGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGCTCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAGATTTTGAAGATAATAATAACACTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATTGGCAGTCATCTAGAACAGCCTGGTCAGCACATGATCCCGCAGTATTAAAAAAGAAGAAACCGAATAATTCAAACAACCAACTAGACAAATCTCAGCAGTCACCTCTTCCGTGTTCAAACAGCAAGTCATGTAATCAAAAAGTCAAATCAAACGACACTACTGGATCATCTCCAGACAATCGTTCAGAATGGAATAATACACACGCCGAGTCAAATCGTTGTCATCACCCACCAAGGCGTAATCGACGTTATATATCGAAGAGCCTTAGTGTTTGCATGGATGGTACAACAACAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11140#0 GATCCCTGCAACTTTAAATTGTTGTATCCCAAAGAAAATGGTTTTACTCAATCGATATTA 60 consensus_11140#1 ------------------------------------------------------------ consensus_11140#0 TGGAATTCTAAACATTTTAATGATAATAAAAGTTGCAGTCAGTTTTCTCATCCATTTAAC 120 consensus_11140#1 ------------------------------------------------------------ consensus_11140#0 AATGTTTCTGATGATCGTCATCGTCGTACATCTGGTCCAGGCATGCAGAATAAATAACAA 180 consensus_11140#1 ------------------------------------------------------------ consensus_11140#0 GTGAACATAGTAGCTTGGAAAATGTATATCATGCTAACAGTGTCCCTTCCAGTTATCTAA 240 consensus_11140#1 ------------------------------------------------------------ consensus_11140#0 CTATCAATACTTCACCAATCAATTCATTGATAGACACTTCCCAAGGCCAGTATACATTTT 300 consensus_11140#1 ------------------------------------------------------------ consensus_11140#0 CAGATAACTGGTGGGATAATCCTTCAGCATCACAAATTGTAGCTGACCTTTTGAGGGAAA 360 consensus_11140#1 ------------------------------------------------------------ consensus_11140#0 CACAACTTTCAGTTTCAGCTAACACTAGTATTCCTCCTAAGTCAGCATTATACCAGCCAT 420 consensus_11140#1 ------------------------------------------------------------ consensus_11140#0 GGCAATACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAAAAGTG 480 consensus_11140#1 ------ACCAAGAAATGATTCCCTCAGCCAGTAAAAGTCCTTCGGCATCACGCAANAGTG 54 ************************************************* **** consensus_11140#0 TTCGCATACGTGGTGGATATTGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGC 540 consensus_11140#1 TTCGCGTACGTGGTGGATATCGTCGTCGTAAACACCCATCTGAATGTTCCAGAACTCAGC 114 ***** ************** *************************************** consensus_11140#0 TCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAG 600 consensus_11140#1 TCAATAATCTTACTACTTTTCAAAATCCAGCCATCTGTCGTGCCCGTAGTTTTAGTTCAG 174 ************************************************************ consensus_11140#0 ATTTTGAAGATAATAATAACAGTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATT 660 consensus_11140#1 ATTTTGAAGATAATAATAACACTGGTGTTGATTCATCAAAATTGCAACCCAATTTTAATT 234 ********************* ************************************** consensus_11140#0 GGCAGTCATCTAGAACAGCCTGGTCAGCACATGATCCCGCAGTATTAAAAAAGAAACCTG 720 consensus_11140#1 GGCAGTCATCTAGAACAGCCTGGTCAGCACATGATCCCGCAGTATTAAAAAAGAA----- 289 ******************************************************* consensus_11140#0 CTGCATATTTAAGAGCATCATATAGTCAAGGAAATGTTGCTTTTGTTCAGCTTGAAAGTA 780 consensus_11140#1 ------------------------------------------------------------ consensus_11140#0 ATTCAAATATGAAACCGAATAATTCAAACAACCAACTAGACAAATCTCAGCAGTCACCTC 840 consensus_11140#1 ----------GAAACCGAATAATTCAAACAACCAACTAGACAAATCTCAGCAGTCACCTC 339 ************************************************** consensus_11140#0 TTCCGTGTTCAAACAGCAAGTCATGTAATCAAAAAGTCAAATCAAACGACACTACTGGAT 900 consensus_11140#1 TTCCGTGTTCAAACAGCAAGTCATGTAATCAAAAAGTCAAATCAAACGACACTACTGGAT 399 ************************************************************ consensus_11140#0 CATCTCCAGACAATCGTTCAGAATGGAATAATACACACGCCAAGTCAAATCGTTGTCATC 960 consensus_11140#1 CATCTCCAGACAATCGTTCAGAATGGAATAATACACACGCCGAGTCAAATCGTTGTCATC 459 ***************************************** ****************** consensus_11140#0 ACCCACCAAGGCGTAATCGACGTTATATATCGAAGAGCCTTAGTGTTTGCATGGATGGTA 1020 consensus_11140#1 ACCCACCAAGGCGTAATCGACGTTATATATCGAAGAGCCTTAGTGTTTGCATGGATGGTA 519 ************************************************************ consensus_11140#0 CAACAACAAACAATCCAGTCACTGGTATACTAAAAGAGGGAATTTCAATAAATCTTCATA 1080 consensus_11140#1 CAACAACAAAC------------------------------------------------- 530 *********** consensus_11140#0 CTAATAAAATTAACGAACCTAAAAATGAGTTTATTACATCAAACTGGCTACTGTTGCCCG 1140 consensus_11140#1 ------------------------------------------------------------ consensus_11140#0 ATGAATTATGGCTTGAAGTACTCCGATATTTAAGTCCAGTTGATCGTGTACGGGTTGCTC 1200 consensus_11140#1 ------------------------------------------------------------ consensus_11140#0 AAACTTGTCGACATTTGTCTAGACTTTCAATGGATCGTTCATTATGGCGAGTCATTCATC 1260 consensus_11140#1 ------------------------------------------------------------ consensus_11140#0 TTCATCGACAACACCATTTGACTGATGCAGATTTAGTGAGAATTGGAAATCTTAAACCAA 1320 consensus_11140#1 ------------------------------------------------------------ consensus_11140#0 AAGAATTACGTTTCACTTATTGTCGTGGTGATAGCCTAACTGCTACAGGGTTAAAACGCA 1380 consensus_11140#1 ------------------------------------------------------------ consensus_11140#0 TGTTTCTA 1388 consensus_11140#1 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||