These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11149#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1405 fasta sequence [ACTCCTCTGTCCTTGATAACGGCAACCATTCAAACCCTCAGATCCGCGACATGTCTAGTAACATGATAAAAGCTGACTGTGTTGTGATAG-AAGACAGTTTTCGAGGATTTCCTA-CGGAGTATTTCTGCACATCTCCTCGGTATGACGAATG-CTTGGATTATGTTCTCATACCAAATGGTATGATAAAAGATAGGCTTGAAAAAATGTCAATGGATATTGTTGACTATTACGAGGCCTGTAATGCGACATCGATCACACTTATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTATGTTAATGATGTCAGTATTCATGAACCTATATTAACTGGTTTAGGAGATCCTTCGGAATACAAAGATAAGAATGTTCTTGTGGTCGAAGATATAATTGACACAGGAAAAACAATAACGAAACTCATAAGCCATTTGGATAGTTTGTCTACGAAAAGTGTTAAAGTCGCAAGCCTCCTCGTCAAGCGAACATCGCCCAGAAATGATTACCGACCAGACTTTGTTGGTTTTGAAGTTCCAAATCGATTTGTCGTTGGCTATGCTTTAGACTATAATGATAATTTCCG-TGACCTGCACCATATTTGCGTGA-TTAATGAAGTGGGTCAAAAAAAATTCTCTGTACCCTGTACATCAAAACCTGTTTAAATGTTTT-TTAGTTGAGATAAT-AACAAGAAACTAAATAAATACAGAAACAGAATTTCCTTCAAAATGGTCATTCTGTAAATAATTAATCAATATCACAGCCAAAAAAATATTTAACACTTCGTTGTTCTCTTCCAACTTCTTCTATACTTTTGTTATCCTATCTATACTATCTATACTACATATACTATGCTATCTATCCTATCTATATACTATACTATCGTTAGTCTATACTTGTATAATCAACATATCTTCAATAAGATATGTATTATTATCAACGAAACTGATTTTTCCATATCTATATATATTCTTAACTTATTTCTTTTTTTTATATTTTATTTCTAAGATCATATTTGGCACACAAATGTTTTTCTTTCTTTTTTCTCTTTTTTTCTTGTTTTACTCCTTTCATTTCCGTTGATCAATTGATTAATCAATTTAATTGATTATTATTACACTTCTTATACTTCCTTCCCCTCCCCCAACTTCTATCATCAAAATAAAATGTTTCTTCATAAGAAAGATTCTAATGTTGTATGATTGACCAAAAAACAAAAAAAAACATTTTTCAATAATGATCATTAATTTCTAGTGTTATTTATTACTTATTAAAAATATTTTTTAGTATTATTGTTATTAATAAAACTAAAATCGAAGAAAAA] [+] EMBL AI975065 [ACTCCTCTGTCCTTGATAACGGCAACCATTCAAACCCTCAGATCCGCGACATGTCTAGTAACATGATAAAAGCTGACTGTGTTGTGATAG AAGACAGTTTTCGAGGATTTCCTA CGGAGTATTTCTGCACATCTCCTCGGTATGACGAATG CTTGGATTATGTTCTCATACCAAATGGTATGATAAAAGATAGGCTTGAAAAAATGTCAATGGATATTGTTGACTATTACGAGGCCTGTAATGCGACATCGATCACACTTATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTATGTTAATGATGTCAGTATTCATGAACCTATATTAACTGGTTTAGGAGATCCTTCGGAATACAAAGATAAGAATGTTCTTGTGGTCGAAGATATAATTGACACAGGAAAAACAATAACGAAACTCATAAGCCATTTGGATAGTTTGTCTACGAAAAGTGTTAAAG ] [+] EMBL SMHGPRT [ ATGTCTAGTAACATGATAAAAGCTGACTGTGTTGTGATAG AAGACAGTTTTCGAGGATTTCCTA CGGAGTATTTCTGCACATCTCCTCGGTATGACGAATG CTTGGATTATGTTCTCATACCAAATGGTATGATAAAAGATAGGCTTGAAAAAATGTCAATGGATATTGTTGACTATTACGAGGCCTGTAATGCGACATCGATCACACTTATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTATGTTAATGATGTCAGTATTCATGAACCTATATTAACTGGTTTAGGAGATCCTTCGGAATACAAAGATAAGAATGTTCTTGTGGTCGAAGATATAATTGACACAGGAAAAACAATAACGAAGCTCATAAGCCATTTGGATAGTTTGTCTACGAAAAGTGTTAAAGTCGCAAGCCTCCTCGTCAAGCGAACATCGCCCAGAAATGATTACCGACCAGACTTTGTTGGTTTTGAAGTTCCAAATCGATTTGTCGTTGGCTATGCTTTAGACTATAATGATAATTTCCG TGACCTGCACCATATTTGCGTGA TTAATGAAGTGGGTCAAAAAAAATTCTCTGTACCCTGTACATCAAAACCTGTTTAAATGTTTT TTAGTTGAGATAAT AACAAGAAACTAAATAAATACAGAAACAGAATTTCCTTCAAAATGGTCATTCTGTAAATAATTAATCAATATCACAGCCAAAAAAATATTTAACACTTCGTTGTTCTCTTCCAACTTCTTCTATACTTTTGTTATCCTATCTATACTATCTATACTACATATACTATGCTATCTATCCTATCTATATACTATACTATCGTTAGTCTATACTTGTATAATCAACATATCTTCAATAAGATATGTATTATTATCAACGAAACTGATTTTTCCATATCTATATATATTCTTAACTTATTTCTTTTTTTTATATTTTATTTCTAAGATCATATTTGGCACACAAATGTTTTTCTTTCTTTTTTCTCTTTTTTTCTTGTTTTACTCCTTTCATTTCCGTTGATCAATTGATTAATCAATTTAATTGATTATTATTACACTTCTTATACTTCCTTCCCCTCCCCCAACTTCTATCATCAAAATAAAATGTTTCTTCATAAGAAAGATTCTAATGTTGTATGATTGACCAAAAAACAAAAAAAAACATTTTTCAATAATGATCATTAATTTCTAGTGTTATTTATTACTTATTAAAAATATTTTTTAGTATTATTGTTATTAATAAAACTAAAATCGAAGAAAAA] [+] EMBL BF936369 [ CTGTGTTGTGATAGAAAGACAGTTTTCGAGGATTTCCTACCGGAGTATTTCTGCACATCTCCTCGGTATGACAAATGCCTTGGATTATGTTCTCATACCAAATGGTATGATAAAAGATAGGCTTGAAAAAATGTCAATGGATATTGTTGACTATTACGAGGCCTGTAATGCGACATCGATCACACTTATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTATGTTAATGATGTCAGTATTCATGAACCTATATTAACTGGTTTAGGAGATCCTTCGGAATACAAAGATAAGAATGTTCTTGTGGTCGAAGATATAATTGACACAGGAAAAACAATAACGAAACTCATAAGCCATTTGGATAGTTTGTCTACGAAAAGTGTTAAAGTCGCAAGCCTCCTCGTCAAGCGAACATCGCCCAGAAATGATTACCGACCAGACTTTGTTGGTTTTGAAGTTCCAAATCGATTTGTCGTTGGCTATGCTTTAGACTATAATGATAATTTCCG TGACCTGCACCATATTTGCGTGA TTAATGAAGTGGGTC AAAAAAATTCTCTGTACCCTGTACATCAAA ] [+] EMBL CD082817 [ aggAGTTTTCGAGGATTTCCTA CGGAGTATTTCTGCACATCTCCTCGGTATGACGAATG CTTGGATTATGTTCTCATACCAAATGGTATGATAAAAGATAGGCTTGAAAAAATGTCAATGGATATTGTTGACTATTACGAGGCCTGTAATGCGACATCGATCACACTTATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTATGTTAATGATGTCAGTATTCATGAACCTATATTAACTGGTTTAGGAGATCCTTCGGAATACAAAGATAAGAATGTTCTTGTGGTCGAAGATATAATTGACACAGGAAAAACAATAACGAAACTCATAAGCCATTTGGATAGTTTGTCTACGAAAAGTGTTAAAGTCGCAAGCCTCCTCGTCAAGCGAACATCGCCCAGAAATGATTACCGACCAGACTTTGTTGGTTTTGAAGTTCCAAATCGATTTGTCGTTGGCTATGCTTTAGACTATAATGATAATTTCCG TGACCTGCACCATATTTGCGTGA TTAATGAAGTGGGTCANAAAAAATTCTCTGTACCCTGTACATCAAAACCT ] [+] EMBL CD193577 [ AAATGGTATGATAAAAGATAGGCTTGAAAAAATGTCAATGGATATTGTTGACTATTACGAGGCCTGTAATGCGACATCGATCACACTTATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTat ] [+] EMBL AI067637 [ CACTTATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTATGTTAATGATGTCAGTATTCATGAACCTATATTAACTGGTTTAGGAGATCCTTCGGAATACAAAGATAAGAATGTTCTTGTGGTCGAAGATATAATTGACACAGGAAAAACAATAACGAAACTCATAAGCCATTTGGATAGTTTGTCTACGAAAAGTGTTAAAGTCGCAAGCCTCCTCGTCAAGCGAACATCGCCCAGAAATGATTACCGACCAGACTTTGTTGGTTTTGAAGTTCCAAATCGATTTGTCGTTGGCTATGCTTTAGACTATAATGATAATTTCCG TGACCTGCACCATATTTGC ] [+] EMBL AI066990 [ TGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTATGTTAATGATGTCAGTATTCATGAACCTATATTAACTGGTTTAGGAGATCCTTCGGAATACAAAGATAAGAATGTTCTTGTGGTCGAAGATATAATTGACACAGGAAAAACAATAACGAAACTCATAAGCCATTTGGATAGTTTGTCTACGAAAAGTGTTAAAGTCGCAAGCCTCCTCGTCAAGCGAACATCGCCCAGAAATGATTACCGACCAGACTTTGTTGGTTTTGAAGTTCCAAATCGATTTGTCGTTGGCTATGCTTTAGACTATAATGATAATTTCCG TGACCTGCNACATATTTGCGTGA TTAATGAAGTGGGTCAAAANAAA TCTCTGTA CCTGTACATCAAAACtg ] [+] EMBL AI067160 [ TGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTATGTTAATGATGTCAGTATTCATGAACCTATATTAACTGGTTTAGGAGATCCTTCGGAATACAAAGATAAGAATGTTCTTGTGGTCGAAGATATAATTGACACAGGAAAAACAATAACGAAACTCATAAGCCATTTGGATAGTTTGTCTACGAAAAGTGTTAAAGTCGCAAGCCTCCTCGTCAAGCGAACATCGCCCAGAAATGATTACCGACCAGACTTTGTTGGTTTTGAAGTTCCAAATCGATTTGTCGTTGGCTATGCTTTANACTATAATGATAATTTCCGTTGACCTGCACCATATTTGCGTGATTTAATGAAGTGG ] [+] EMBL CD160739 [ tggaaggGGTTTAGGAGATCCTTCGGAATACAAAGATAAGAATGTTCTTGTGGTCGAAGATATAATTGACACAGGAAAAACAATAACGAAATTCATAAGCCATTTGGATAGTTTGTCTACGAAAAGTGTTAAAGTCGCAAGCCTCCTCGTCAAGCGAACATCGCCCAGAAATGATTACCGACCAGACTTTGTTGGTTTTGAAGTTCCAAATCGATTTGTCGTTGGCTATGCTTTAGACTATAATGATAATTTCCG TGACCTGCACCATATTTGCGTGA TTAATGAAGTGGGTCAAAAAAAATTCTCTGTACCCTGTACATCAAAACCTGTTTAAATGTTTT TTAGTTGAGATAAT AACAAGAAACTAAATAAATACAGAAACAGAATTTCCTTCAAAATGGTCATTCTGTAAATAATTAATCAATATCACAGCCAAAAAAATATTTAACACTTCGTTGTTCTCTTCCAACTTCTTCTATACTTTTGTTATCCTATCTATACTATCTATACTACATATACTATGCTATCTATCCTATCTATATACTATACTATCGTTAGTCTATACTTGTATAATCAACATATCTTCAATAAGATATGTATTATTATCAACGAAACTGATNNTTCCATATCTATATATA ] [-] EMBL CD126140 [ TGATTACCGACCAGACTTTGTTGGTTTTGAAGTTCCAAATCGATTTGTCGTTGGCTATGCTTTAGACTATCATGATAATTTCCG TGACCTGCACCATATTTGCGTGA TTAATGAAGTGGGTCATACAATATTCTCTGTACCCTGTACATCAAAACCTGTTTAAATATTTTATTAGTTGAGATAATCAACGAGAAACTAAATAAATACAGAAACAGAATTTCCTTC ATATGGTCATTCTGTAAATAAT ATCAATATCACA ] [-] EMBL CD126073 [ TGATTACCGACCAGACTTTGTTGGTTTTGAAGTTCCAAATCGATTTGTCGTTGGCTATGCTTTAGACTATAATGATAATTTCCG TGACCTGCACCATATTTGCGTGA TTAATGAAGTGGGTCAAAAAAAATTCTCTGTACCCTGTACATCAAAACCTGTTTAAATGTTTT TTAGTTGAGATAAT AACAAGAAACTAAATAAATACAGAAACAGAATTTCCTTCAAAATGGTCATTCTGCAAATAATTAATCAATATCACAGCCAAAAAAATATTTAACACTTCGTTGTTCTCTTCCAACTTCTTCTATACTTTTGTTATCCTATCTATAC AT TATACT ] [+] EMBL CD062765 [ CGACCAGACTTTGTTGGCTTTGAAGTTCCAAATCGATTTGTAGATGGCTATGCTTTAGACTATAATGATAATTTCCG TGACCTGCACCATATTTGCGTGA ATAATGAAGTGGGTCAAAAAAAATTCTCTGTACCCTGTACATCAAAACCTGTCTAAATGTTTT TTAGTTGA ] [-] EMBL CD185275 [ ATATTTGCGTGA TTAATGAAGTGGGTCAAAAAAAATTCTCTGTACCCTGTACATCAAAACCTGTTTAAATGTTTT TTAGTTGAGATAAT AACAAGAAACTAAATAAATACAGAAACAGAATTTCCTTCAAAATGGTCATTCTGTAAATAATTAATCAAT ] [-] EMBL CD185247 [ ATATTTGCGTGA TTAATGAAGTGGGTCAAAAAAAATTCTCTGTACCCTGTACATCAAAACCTGTTTAAATGTTTT TTAGTTGAGATAAT AACAAGAAACTAAATAAATACAGAAACAGAATTTCCTTCAAAATGGTCATTCTGTAAATAATTAATCAAT ] [-] EMBL CD179145 [ TGA TTAATGAAGTGGGTCAAAAAAAATTCTCTGTACCCTGTACATCAAAACCTGTTTAAATGTTTT TTAGTTGAGATAAT AACAAGAAACTAAATAAATACAGAAACAGAATTTCCTTCAAAATGGTCATTCTGTAAATAATTAATCAATATCACAGCCAAAAAAATATTTAACACTTCGTTGTTCTCTCCCAACTTCTTCTATACTTTTGTTATCCTATCTATACTATCTATACTACATATACTATGCTATCTATCCTATCTATATACTATACTATCGTTAGTCTATACTTGTATAATCAACATATCTCCAATAAGATATGTATTATTATCAACGAAACTGATTTTTCCATATCTATATATATTCTTAACTTATTTCTTTTTTTTATATTTTATTTCTAAGATCATATTTGGCACACAAATGTTTTTCTTTCTTTTTTCTCTTTTTTTCT ] consensusID : consensus_11149#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 887 fasta sequence [CTACAGGCCAANAATTTGGCACGAGGGCCATTTGGATAGTTTGTCTACGAAAAGTGTTAAAGTCGCAAGCCTCCTCGTCAAGCGAACATCGCCCAGAAATGATTACCGACCAGACTTTGTTGGTTTTGAAGTTCCAAATCGATTTGTCGTTGGCTATGCTTTAGACTATAATGATAATTTCCGTGACCTGCACCATATTTGCGTGATTAATGAAGTGGGTCAAAAAAAATTCTCTGTACCCTGTACATCAAAACCTGTTTAAATGTTTTTTAGTTGAGATAATAACAAGAAACTAAATAAATACAGAAACAGAATTTCCTTCAAAATGGTCATTCTGTAAATAATTAATCAATATCACAGCCAAAAAAATATTTAACACTTCGTTGTTCTCTTCCAACTTCTTCTATACTTTTGTTATCCTATCTATACTATCTATACTACATATACTATGCTATCTATCCTATCTATATACTATACTATCGTTAGTCTATACTTGTATAATCAACATATCTTCAATAAGATATGTATTATTATCAACGAAACTGATTTTTCCATATCTATATATATTCTTAACTTATTTCTTTTTTTTATATTTTATTTCTAAGATCATATTTGGCACACAAATGTTTTTCTTTCTTTTTTCTCTTTTTTTCTTGTTTTACTCCTTTCATTTCCGTTGATCAATTGATTAATCAATTTAATTGATTATTATTACACTTCTTATACTTCCTTCCCCTCCCCCACTTCTATCATCANAATAAATGTTTCTCATAAGAAGATTCTATGTTGTATGATTGACCAAAAACAAAAAAACATTNTCAATATGATCATTAATTCTAGNGTATTATTACTTATAAAATATNNNTAGTATTATGGTATAATAAACT] [+] EMBL CD080818 [CTACAGGCCAANAATTTGGCACGAGGGCCATTTGGATAGTTTGTCTACGAAAAGTGTTAAAGTCGCAAGCCTCCTCGTCAAGCGAACATCGCCCAGAAATGATTACCGACCAGACTTTGTTGGTTTTGAAGTTCCAAATCGATTTGTCGTTGGCTATGCTTTAGACTATAATGATAATTTCCGTGACCTGCACCATATTTGCGTGATTAATGAAGTGGGTCAAAAAAAATTCTCTGTACCCTGTACATCAAAACCTGTTTAAATGTTTTTTAGTTGAGATAATAACAAGAAACTAAATAAATACAGAAACAGAATTTCCTTCAAAATGGTCATTCTGTAAATAATTAATCAATATCACAGCCAAAAAAATATTTAACACTTCGTTGTTCTCTTCCAACTTCTTCTATACTTTTGTTATCCTATCTATACTATCTATACTACATATACTATGCTATCTATCCTATCTATATACTATACTATCGTTAGTCTATACTTGTATAATCAACATATCTTCAATAAGATATGTATTATTATCAACGAAACTGATTTTTCCATATCTATATATATTCTTAACTTATTTCTTTTTTTTATATTTTATTTCTAAGATCATATTTGGCACACAAATGTTTTTCTTTCTTTTTTCTCTTTTTTTCTTGTTTTACTCCTTTCATTTCCGTTGATCAATTGATTAATCAATTTAATTGATTATTATTACACTTCTTATACTTCCTTCCCCTCCCCCACTTCTATCATCANAATAAATGTTTCTCATAAGAAGATTCTATGTTGTATGATTGACCAAAAACAAAAAAACATTNTCAATATGATCATTAATTCTAGNGTATTATTACTTATAAAATATNNNTAGTATTATGGTATAATAAACT] consensusID : consensus_11149#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 352 fasta sequence [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTATGTTAATGATGTCAGTATTCATGAACCTATATTAACTGGTTTAGGAGATCCTTCGGAATACAAAGATAAGGTATTTTCCAACCTAATGATAATTTTTGTAAGAATGTTCTTGTGGTCGAAGATATAATTGACACAGGAAAAACAATAACGAAACTCATAAGCCATTTGGATAGTTTGTCTACGAAAAGTGTTAAAGTCGCAAGGTATGTTTTGTAATATTTCCATCTTT] [+] EMBL CD192817 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTATGTTAATGATGTCAGTATTCATGAACCTATATTAACTGGTTTAGGAGATCCTTCGGAATACAAAGATAAGGTATTTTCCAACCTAATGATAATTTTTGTAAGAATGTTCTTGTGGTCGAAGATATAATTGACACAGGAAAAACAATAACGAAACTCATAAGCCATTTGGATAGTTTGTCTACGAAAAGTGTTAAAGTCGCAAGGTATGTTTTGTAATATTTCCATCTTT] [+] EMBL CD192564 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTTCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTACGTTAATGATGTCAGTATTCATGAACCTATATTAACTGGTTTAGGAGATCCTTCGGAATACAAAGATAAGGTATTTTCCAACCTAATGATAATTTTTGTAAGAATGTTCTTGTGGTCGAAGATATAATTGACACAGGAAAAACAATAACGAAACTCATAAGCCGTTTGGATAGTTTGTCTACGAAAAGTGTTAAAGTCTCAAGGTATGTTTTGTAATATTTCCATCTTT] [+] EMBL CD192377 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTATGTTAATGATGTCAGTATTCATGAACCTATATTAACTGGTTTAGGAGATCCTTCGGAATACAAAGATAAGGTATTTTCCAACCTAATGATAATTTTTGTAAGAATGTTCTTGTGGTCGAAGATATAATTGACACAGGAAAAACAATAACGAAACTCATAAGCCATTTGGATAGTTTGTCTACGAAAAGTGTTAAAGTCGCAAGGTATGTTTTGTAATATTTCCATCTTT] [+] EMBL CD192563 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCTTCCTACCAATGTC ] [+] EMBL CD191949 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAG ] [+] EMBL CD192083 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTCCGTGTCAAGAG ] [+] EMBL CD191945 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAG ] [+] EMBL CD192502 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAG ] [+] EMBL CD192477 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAG ] [+] EMBL CD192410 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAG ] [+] EMBL CD192409 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAG ] [+] EMBL CD192156 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAG ] [+] EMBL CD192519 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAG ] [+] EMBL CD192141 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAG ] [+] EMBL CD191971 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAG ] [+] EMBL CD192076 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAG ] [+] EMBL CD192062 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAG ] [+] EMBL AI067044 [ TGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTATGTTAATGATGTCAGTATTCATGAACCTATATTAACTGGTTTAGGAGATCCT ] consensusID : consensus_11149#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 280 fasta sequence [ATGGTCATGCTGTAAATCATTCATCAATATCACAGCCAAAAATATATTTAACACTTCGTTGTTCTCTTCCAACTTCTTCTATACTTTTGTTATCCTATCTATACTATCTATACTACATATACTATGCTATCTATGCTATCTATGATACTGTACTGATCAGTTAGTCTGATACTTGTATAAGTCGTCATATCTTCGATAAGATATGTATTATTATCTAACGTTACTGCATTTTTCCAGTATCTATCATATAGTTCTGTAGACTTGAGTATCTTATTTTTTT] [+] EMBL AI395848 [ATGGTCATGCTGTAAATCATTCATCAATATCACAGCCAAAAATATATTTAACACTTCGTTGTTCTCTTCCAACTTCTTCTATACTTTTGTTATCCTATCTATACTATCTATACTACATATACTATGCTATCTATGCTATCTATGATACTGTACTGATCAGTTAGTCTGATACTTGTATAAGTCGTCATATCTTCGATAAGATATGTATTATTATCTAACGTTACTGCATTTTTCCAGTATCTATCATATAGTTCTGTAGACTTGAGTATCTTATTTTTTT] consensusID : consensus_11149#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 162 fasta sequence [ATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTATGTTGTACGTTAATAAATAAAACATAATTTATCCGAAATT] [-] EMBL CD192652 [ATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTATGTTGTACGTTAATAAATAAAACATAATTTATCCGAAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11149#1 ------------------------------------------------------------ consensus_11149#3 ------------------------------------------------------------ consensus_11149#0 ACTCCTCTGTCCTTGATAACGGCAACCATTCAAACCCTCAGATCCGCGACATGTCTAGTA 60 consensus_11149#2 ------------------------------------------------------------ consensus_11149#4 ------------------------------------------------------------ consensus_11149#1 ------------------------------------------------------------ consensus_11149#3 ------------------------------------------------------------ consensus_11149#0 ACATGATAAAAGCTGACTGTGTTGTGATAGAAGACAGTTTTCGAGGATTTCCTACGGAGT 120 consensus_11149#2 ------------------------------------------------------------ consensus_11149#4 ------------------------------------------------------------ consensus_11149#1 ------------------------------------------------------------ consensus_11149#3 ------------------------------------------------------------ consensus_11149#0 ATTTCTGCACATCTCCTCGGTATGACGAATGCTTGGATTATGTTCTCATACCAAATGGTA 180 consensus_11149#2 ------------------------------------------------------------ consensus_11149#4 ------------------------------------------------------------ consensus_11149#1 ------------------------------------------------------------ consensus_11149#3 ------------------------------------------------------------ consensus_11149#0 TGATAAAAGATAGGCTTGAAAAAATGTCAATGGATATTGTTGACTATTACGAGGCCTGTA 240 consensus_11149#2 ------------------------------------------------------------ consensus_11149#4 ------------------------------------------------------------ consensus_11149#1 ------------------------------------------------------------ consensus_11149#3 ------------------------------------------------------------ consensus_11149#0 ATGCGACATCGATCACACTTATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATC 300 consensus_11149#2 ------------------------------------------------------------ consensus_11149#4 ------------------------------------------------------------ consensus_11149#1 ------------------------------------------------------------ consensus_11149#3 ------------------------------------------------------------ consensus_11149#0 TTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTG 360 consensus_11149#2 ------------------------------------------------------------ consensus_11149#4 ------------------------------------------------------------ consensus_11149#1 ------------------------------------------------------------ consensus_11149#3 ------------------------------------------------------------ consensus_11149#0 AGTTTGTTCGTGTCAAGAGTTATGTTAATGATGTCAGTATTCATGAACCTATATTAACTG 420 consensus_11149#2 ------------------------------------------------------------ consensus_11149#4 ------------------------------------------------------------ consensus_11149#1 ------------------------------------------------------------ consensus_11149#3 ------------------------------------------------------------ consensus_11149#0 GTTTAGGAGATCCTTCGGAATACAAAGATAAGAATGTTCTTGTGGTCGAAGATATAATTG 480 consensus_11149#2 ------------------------------------------------------------ consensus_11149#4 ------------------------------------------------------------ consensus_11149#1 ----CTACAGGCCAANAATTTGGCACGAGGGCCATTTGGATAGTTTGTCTACGAAAAGTG 56 consensus_11149#3 ------------------------------------------------------------ consensus_11149#0 ACACAGGAAAAACAATAACGAAACTCATAAGCCATTTGGATAGTTTGTCTACGAAAAGTG 540 consensus_11149#2 ------------------------------------------------------------ consensus_11149#4 ------------------------------------------------------------ consensus_11149#1 TTAAAGTCGCAAGCCTCCTCGTCAAGCGAACATCGCCCAGAAATGATTACCGACCAGACT 116 consensus_11149#3 ------------------------------------------------------------ consensus_11149#0 TTAAAGTCGCAAGCCTCCTCGTCAAGCGAACATCGCCCAGAAATGATTACCGACCAGACT 600 consensus_11149#2 ------------------------------------------------------------ consensus_11149#4 ------------------------------------------------------------ consensus_11149#1 TTGTTGGTTTTGAAGTTCCAAATCGATTTGTCGTTGGCTATGCTTTAGACTATAATGATA 176 consensus_11149#3 ------------------------------------------------------------ consensus_11149#0 TTGTTGGTTTTGAAGTTCCAAATCGATTTGTCGTTGGCTATGCTTTAGACTATAATGATA 660 consensus_11149#2 ------------------------------------------------------------ consensus_11149#4 ------------------------------------------------------------ consensus_11149#1 ATTTCCGTGACCTGCACCATATTTGCGTGATTAATGAAGTGGGTCAAAAAAAATTCTCTG 236 consensus_11149#3 ------------------------------------------------------------ consensus_11149#0 ATTTCCGTGACCTGCACCATATTTGCGTGATTAATGAAGTGGGTCAAAAAAAATTCTCTG 720 consensus_11149#2 ------------------------------------------------------------ consensus_11149#4 ------------------------------------------------------------ consensus_11149#1 TACCCTGTACATCAAAACCTGTTTAAATGTTTTTTAGTTGAGATAATAACAAGAAACTAA 296 consensus_11149#3 ------------------------------------------------------------ consensus_11149#0 TACCCTGTACATCAAAACCTGTTTAAATGTTTTTTAGTTGAGATAATAACAAGAAACTAA 780 consensus_11149#2 ------------------------------------------------------------ consensus_11149#4 ------------------------------------------------------------ consensus_11149#1 ATAAATACAGAAACAGAATTTCCTTCAAAATGGTCATTCTGTAAATAATTAATCAATATC 356 consensus_11149#3 -----------------------------ATGGTCATGCTGTAAATCATTCATCAATATC 31 consensus_11149#0 ATAAATACAGAAACAGAATTTCCTTCAAAATGGTCATTCTGTAAATAATTAATCAATATC 840 consensus_11149#2 --------------------------------------------------TATGTGTGTC 10 consensus_11149#4 ---------------------------------------------------ATGTGTGTC 9 ** * ** consensus_11149#1 ACAGCCAAAAAAATATTTAA-CACTTCGTTGTTCTCTTCCAACTTCTTCTATACTTTTGT 415 consensus_11149#3 ACAGCCAAAAATATATTTAA-CACTTCGTTGTTCTCTTCCAACTTCTTCTATACTTTTGT 90 consensus_11149#0 ACAGCCAAAAAAATATTTAA-CACTTCGTTGTTCTCTTCCAACTTCTTCTATACTTTTGT 899 consensus_11149#2 C---TCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTC 67 consensus_11149#4 C---TCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTC 66 **** ****** * * * ** *** * * *** * * * consensus_11149#1 TATCCTATCTATACTATCTATACTACATATACTATGCTATCTATCCTATCTAT-ATACTA 474 consensus_11149#3 TATCCTATCTATACTATCTATACTACATATACTATGCTATCTATGCTATCTATGATACTG 150 consensus_11149#0 TATCCTATCTATACTATCTATACTACATATACTATGCTATCTATCCTATCTAT-ATACTA 958 consensus_11149#2 CGTGCTCGAGGTATCGTCC-TACCA-ATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTATG 125 consensus_11149#4 CGTGCTCGAGGTATCGTCC-TACCA-ATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTATG 124 * ** ** ** *** * ** * * ** * * * ** * * * consensus_11149#1 TACT-ATC-GTTAGTCT-ATACTTGTATAA-TCAACATATCTTCAATAAGATATGTATTA 530 consensus_11149#3 TACTGATCAGTTAGTCTGATACTTGTATAAGTCGTCATATCTTCGATAAGATATGTATTA 210 consensus_11149#0 TACT-ATC-GTTAGTCT-ATACTTGTATAA-TCAACATATCTTCAATAAGATATGTATTA 1014 consensus_11149#2 TTAATGAT-GTCAGTAT-TCATGAACCTATATTAACTGGTTTAGGAGATCCTTCGGAATA 183 consensus_11149#4 TTGT--AC-GTTAATAA-ATA-AAACATAATTTATCCGAAATT----------------- 162 * ** * * * ** * * * consensus_11149#1 TTATC-AACGAAACTG-ATTTTTCCA-TATCTAT-ATATATTCTTAACTTATTTCTTTTT 586 consensus_11149#3 TTATCTAACGTTACTGCATTTTTCCAGTATCTATCATATAGTTCTG-TAGACTTGAGTAT 269 consensus_11149#0 TTATC-AACGAAACTG-ATTTTTCCA-TATCTAT-ATATATTCTTAACTTATTTCTTTTT 1070 consensus_11149#2 CAAAGATAAGGTATTTTCCAACCTAATGATAATTTTTGTAAGAATGTTCTTGTGGTCGAA 243 consensus_11149#4 ------------------------------------------------------------ consensus_11149#1 TTTATATTTTATTTCTAAGATCATATTTGGCACACAAATGTTTTTCTTTCTTTTTTCTCT 646 consensus_11149#3 CTTATTTTTTT------------------------------------------------- 280 consensus_11149#0 TTTATATTTTATTTCTAAGATCATATTTGGCACACAAATGTTTTTCTTTCTTTTTTCTCT 1130 consensus_11149#2 GATATAATTGACACAGGAAAAACAATAACGAAACTCATAAGCCATTTGGATAGTTTGTCT 303 consensus_11149#4 ------------------------------------------------------------ consensus_11149#1 TTTTTTCTTGTTTTACTCCTTTCATTTCCGTTGATCAATTGATTAATCAATTTAATTGAT 706 consensus_11149#3 ------------------------------------------------------------ consensus_11149#0 TTTTTTCTTGTTTTACTCCTTTCATTTCCGTTGATCAATTGATTAATCAATTTAATTGAT 1190 consensus_11149#2 ACGAAAAGTGTTAAAGTCGCAAGGTATGTTTTGTAATATTTCCATCTTT----------- 352 consensus_11149#4 ------------------------------------------------------------ consensus_11149#1 TATTATTACACTTCTTATACTTCCTTCCCCTCCCCCA-CTTCTATCATCANAATAAA--- 762 consensus_11149#3 ------------------------------------------------------------ consensus_11149#0 TATTATTACACTTCTTATACTTCCTTCCCCTCCCCCAACTTCTATCATCAAAATAAAATG 1250 consensus_11149#2 ------------------------------------------------------------ consensus_11149#4 ------------------------------------------------------------ consensus_11149#1 -TGTTTCTCATAAGAAGATTCTATGTTGTATGATTGACCAAAAA-CAAAAAAACATTNTC 820 consensus_11149#3 ------------------------------------------------------------ consensus_11149#0 TTTCTTCATAAGAAAGATTCTAATGTTGTATGATTGACCAAAAAACAAAAAAAAACATTT 1310 consensus_11149#2 ------------------------------------------------------------ consensus_11149#4 ------------------------------------------------------------ consensus_11149#1 AATATGATCATTAATTCTAGNGTATTATTACTTATAAAATATNNNTAGTATTATGGTATA 880 consensus_11149#3 ------------------------------------------------------------ consensus_11149#0 TTCAATAATGATCATTAATTTCTAGTGTTATTTATTACTTATTAAAAATATTTTTTAGTA 1370 consensus_11149#2 ------------------------------------------------------------ consensus_11149#4 ------------------------------------------------------------ consensus_11149#1 ATAAACT---------------------------- 887 consensus_11149#3 ----------------------------------- consensus_11149#0 TTATTGTTATTAATAAAACTAAAATCGAAGAAAAA 1405 consensus_11149#2 ----------------------------------- consensus_11149#4 ----------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||