These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11153#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 32 consensus length = 2025 fasta sequence [TACATCATTCGTTGGGCAAATTACCCTGTATTTACATAAGTTAGTTATTGGCATAATGTCAAGTCAGTTTATGCTTGTTAGCAGATCTTATTTTTAGTCTCGTTATCTGAATGTCTGACAACTCAGAAATTTATATTTGTGCATAATGTTTAGTTGTTTTGAATATCATTGCAACAACTGGTACTT-TATTTTGTCGATGTCACCTGTCGAAGAACAACAGGGCGATAAACCTATCCAACCTAAAATTGGTATAATATATCCTCCACCTGAAGTAAGGAATATCGTCGATAAAACGGCCAGTTTTGTAGCACGTAATGGTCCAGACTTTGAATCTCGTATTCGTCAAAATGAAATCAGTAATCCAAAGTTTAATTTTCTGAATCCGGCTGATCCATACCACGCATATTATCAACACAAGGTTCGAGAGTTTGCTGAAGGAAGAACACCAGAACCTGCTGCTCTAAAATTGACTATTCCTAGTGCTGCTCGTATTACTCAGGATACTTCGAAATCGATTCAAGAAACATTTACTCCCAAGGATCCACCAGCCGAATTTGAATTTGTTTATGATCCACCTTCCATTAATGCAGTTGATATTGACATAATAAAACTTACAGCACAATTTGTTGCAAGAAACGGTCGACAATTTTTAACTCAGTTAATGAGTCGAGAACAGAGAAATTATCAGTTTGACTTCCTCCGTGCTCAGCACAGTATGTTTGGTTATTTTACAAAACTTGTGGAACAGTACACTAAAATCTTGATACCACCTAAAAATGTTATTTCGAAATTGGAGGACGAGTTAGAGAAACCGAAACAACTGCTTGACGATGTAAAATATAGGGTTGAATGGCATAAGTATCAAGAACGTCAGCGTAAGCGTGAGGAGGAGGCAGCAGAACGTGAACGTGTGGC-GTACGCTATGATTGATTGGCACGACTTCGTGGTTGTTGAAACAGTTGACTTTC-AACCAGGCGAAGCAGGCAATTTCCCTCTACCGACCACTCCTGATGAAGTTGGGGCACGCTTAC-TAG-CCGAAGAACGTGGTCTTCAGCCTCCTTTGAAGCCCTCAGCCCCTCCACCCCCCGGTTCACTTGGATTAATGCCAACTGATATAGATGATGATACAAGTGATCAGGAATTAGATGAATCAGATGATGAAAATGAAGCTTCTGGATTTTCTCAACCTAAAGGCCGAGGTCTGGTCAATCATAGCCCTCTACCATATCCCGATGAGACAGAAAAGCTGGTTAGTGATGATATCCCAACCCCACCTGTTACTAATATGACTGATATAGCTGGAGAAGATGATATGGAGTTATCAGATGATGAGAATATTGCCGAAGAACAGGTTCAACAAACAAAATTATCAACAAAACAGGTACCATTGTCTTCTGATCAAGTCATTATTCGACATGACTACGATCCAAAAGCCACAAGTATTAGAAGAGCAGAGGATTCTGTGCTTTTGGTATCACCTTTCACTGGCGAGAAGATTCCTGCCAACCAAGCTCCGAAACATATTAAGGTTGGGCTACTCGATCCTAAGTGGGTTGAACAGCGTGATCGAGAGGTTCGCGAGAAACGTGACCAAGAACAAGTTTATGCTGCGGGAAATCTGATTGATAGTAGCTTAAAGCAGCTTGCTGAGCGTCGTACAGACATTTTCGGTGTAGGAGTTGATGAAATTCAAATTGGCAAGAAATTGGGAGAACAAGAAATACTCAAGTCTGATAAGCTAATTTGGGATGGTTACTCTGCTACTACAGA-TGTTGTTGCCAAAAGAAACTTAGAAGCGGTTACTGTTAAAGATAATCTGGATTTATTAGAGTTTCAACAGAAATTGGATTCTGCTCGCGATAAAATTGGTCCTCAAAGTGGGGTGCTCCCTGCTCTGGGCATTATTCCTTCGGTACTTCATAAGCCGACAATATTGTTGCCACCACCGTCAATACAAAGTGGAGTTACACAACCTCCACCGCCCCCACCTCCTCCTGGTCTTGTAATGCTTTCCAGTGCTCCACC] [-] EMBL CD087075 [TACATCATTCGTTGGGCAAATTACCCTGTATTTACATAAGTTAGTTATTGGCATAATGTCAAGTCAGTTTATGCTTGTTAGCAGATCTTATTTTTAGTCTCGTTATCTGAATGTCTGACAACTCAGAAATTTATATTTGTGCATAATGTTTAAGTACATTGCATA ATT TAACACCATGCACTTCAATTTTATAGATGTTACCTGTCGAAGAACAACAGGGTGATAAACCTATCCAACCTAAAATTGGTATAATATATCCTCCACCTGAAGTAAGGAATATCGTCGATAAAACGGCCAGTTTTGTAGCACGTAATGGTCCAGACTTTGAATCTCGTATTCGTCAAAATGAAATCAGTAATCCAAAGTTTAATTTTCTGAATCCGGCTGATCCATACCACGCATATTATCAACACAAGGTTCGAGAGTTTGCTGAAGGAAGAACACCAGAACCTGCTGCTCTAAAA ] [+] EMBL CD148423 [ GTTGTTTTGAATATCATTGCAACAACTGGTACTT TATTTTGTCGATGTCACCTGTCGAAGAACAACAGGGCGGTAAACCTATCCAACCTAAAATTGGTATAATATATCCTCCACCTGAAGTAAGGAATATCGTCGATAAAACAGCCAGTTTTGTAGCACGTAATGGTCCAGACTTTGAATCTCGTATTCGTCAAAATGAAATTAGTAATCCAAAGTTCAATTTTCTGAATCCAGCTGATCCATACCACGCATATTATCAACACAAGGTTCGAGAGTTTGCTGAAGGGAGTACACCAGAACCTGCTGCTCTAAAATTGACTATTCCTAGTGCTGCTCGTCTTGCTCAAGATACTCCAAAATCAATTCAGGAAACATTTACTCCCAAGGATCCACCAGCCGAATTTGAATTTGTTTACGATCCACCTTCTATTAATGCAGTTGATATTGACATAATAAAACTTACAGCACAATTTGTTGCAAGAAACGGTCGGCAATTTTTAACTCAGTTAATGAGTCGAGAACAGAGGAATTATCAGTTTGACTTCCTCCGTGCTCAGCACAGTATGTTTGGTTATTTTACAna ] [+] EMBL CD111244 [ gGTTGTTTTGAATATCATTGCAACAACTGGTACTT TATTTTGTCGATGTCACCTGTCGAAGAACAACAGGGCGATAAACCTATCCAACCTAAAATTGGTATAATATATCCTCCACCTGAAGTAAGGAATATCGTCGATAAAACAGCCAGTTTTGTAGCACGTAATGGTCCAGACTTTGAATCTCGTATTCGTCAAAATGAAATTAGTAATCCAAAGTTCAATTTTCTGAATCCAGCTGATCCATACCACGCATATTATCAACACAAGGTACGAGAGTTTGCTGAAGGGAGAACACCAGAACCTGCTGCTCTNAA ] [+] EMBL CD184975 [ ATCGTCGATAAAACGGCCAGTTTTGTAGCACGTAATGGTCCAGACTTTGAATCTCGTATTCGTCAAAATGAAATCAGTAATCCAAAGTTTAATTTTCTGAATCCGGCTGATCCATACCACGCATATTATCAACACAAGGTTCGAGAGTTTGCTGAAGGAAGAACACCAGAACCTGCTGCTCTAAAATTGACTATTCCTAGTGCTGCTCGTATTACTCAGGATACTTCGAAATCGATTCAAGAAACATTTACTCCCAAGGATCCACCAGCCGAATTTGAATTTGTTTATGATCCACCTTCCATTAATGCAGTTGATATTGACATAATAAAACTTACAGCACAATTT ] [+] EMBL CD160240 [ ATATTATCAACACAAGGTTCGAGAGTTTGCTGAAGGAAGAACACCAGAACCTGCTGCTCTAAAATTGACTATTCCTAGTGCTGCTCGTATTACTCAGGATACTTCGAAATCGATTCAAGAAACATTTACTCCCAAGGATCCACCAGCCGAATTTGAATTTGTTTATGATCCACCTTCCATTAATGCAGTTGATATTGACATAATAAAACTTACAGCACAATTTGTTGCAAGAAACGGTCGACAATTTTTAACTCAGTTAATGAGTCGAGAACAGAGAAATTATCAGTTTGACTTCCTCCGTGCTCAGCACAGTATGTTTGGTTATTTTACAAAACTTGTGGAACAGTACACTAAAATCTTGATACCACCTAAAAATGTTATTTCGAAATTGGAGGACGAGTCAGAGAAACCGAAACAACTGCTTGACGATGTAAAATATAGGGTTGAATGGCATAAGTATCAAGAACGTCAGCGTA ] [+] EMBL CD160085 [ TATCAACACAAGGTTCGAGAGTTTGCTGAAGGAAGAACACCAGAACCTGCTGCTCTAAAATTGACTATTCCTAGTGCTGCTCGTATTACTCAGGATACTTCGAAATCGATTCAAGAAACATTTACTCCCAAGGATCCACCAGCCGAATTTGAATTTGTTTATGATCCACCTTCCATTAATGCAGTTGATATTGACATAATAAAACTTACAGCACAATTTGTTGCAAGAAACGGTCGACAATTTTTAACTCAGTTAATGAGTCGAGAACAGAGAAATTATCAGTTTGACTTCCTCCGTGCTCAGCACAGTATGTTTGGTTATTTTACAAAACTTGTGGAACAGTACACTAAAATCTTGATACCACCTTAAAATGTTATTTCGAAATTGGAGGACGAGTTTGAGAAAC ] [+] EMBL CD160036 [ TATCAACACAAGGTTCGAGAGTTTGCTGAAGGAAGAACACCAGAACCTGCTGCTCTAAAATTGACTATTCCTAGTGCTGCTCGTATTACTCAGGATACTTCGAAATCGATTCAAGAAACATTTACTCCCAAGGATCCACCAGCCGAATTTGAATTTGTTTATGATCCACCTTCCATTAATGCAGTTGATATTGACATAATAAAACTTACAGCACAATTTGTTGCAAGAAACGGTCGACAATTTTTAACTCAGTTAATGAGTCGAGAACAGAGAAATTATCAGTTTGACTTCCTCCGTGCTCAGCACAGTATGTTTGGTTATTTTACAAAACTTGTGGAACAGTACACTAAAATCTTGATACCACCTAAAAATGTTATTTCGAAATTGGAGGACGAGTTAGAGAAACCGAAACAACTGCTTGAC ] [+] EMBL CD160049 [ TATCAACACAAGGTTCGAGAGTTTGCTGAAGGAAGGACACCAGAACCTGCTGCTCTAAGATTGACTATTCCTAGTGCTGCTCGTATTACTCAGGATACTTCGAAATCGATTCAAGAAACATTTACTCCCAAGGATCCACCAGCCGAATTTGAATTTGTTTATGATCCACCTTCCATTAATGCAGTTGATATTGACATAATAAAACTTACAGCACAATTTGTTGCAAGAAACGGTCGACAATTTTTAACTCAGTTAATGAGTCGAGAACAGAGAAATTATCAGTTTGACTTCCTCCGTGCTCAGCACAGTATGTTTGGTTATTTTACAAAACTTGTGGAACAGTACACTAAAATCTTGATACCACCTAAAAATGTTATTTCGAAATTGGAGGACGAGTTAGAGAAACCGAAACAACTGCTTGACGATGTAAAATATgg ] [+] EMBL CD160203 [ TATCAACACAAGGTTCGAGAGTCTGCTGAAGGAAGAACACCAGAACCTGCTGCTCTAAAATTGACTATTCCTAGTGCTGCTCGTATTACTCAGGATACTTCGAAATCGATTCAAGAAACATTTACTCCCAAGGATCCACCAGCCGAATTTGAATTTGTTTATGATCCACCTTCCATTAATGCAGTTGATATTGACATAATAAAACTTACAGCACAATTTGTTGCAAGAAACGGTCGACAATTTTTAACTCAGTTAATGAGTCGAGAACAGAGAAATTATCAGTTTGACTTCCTCCGTGCTCAGCACAGTATGTTTGGTTATTTTACAAAAGTTGTGGAACAGTACACTAAAATCTTGATACCACCTAAAAATGTTATTTCGAAATTGGAGGACGAGTTAGAGAAAGCGAAACAAGTGCTTGACGATG ] [+] EMBL CD163137 [ CTATTCCTAGTGCTGCTCGTCTTGCTCAAGATACTCCAAAATCAATTCAGGAAACATTTACTCCCAAGGATCCACCAGCCGAATTTGAATTTGTTTACGATCCACCTTCTATTAATGCAGTTGATATTGACATAATAAAACTTACAGCACAATTTGTTGCAAGAAACGGTCGGCAATTTTTAACTCAGTTAATGAGTCGAGAACAGAGGAATTATCAGTTTGACTTCCTCCGTGCTCAGCACAGTATGTTTGGTTATTTTACAAAACTTGTGGAACAGTACACTAAAATCTTGATACCACCTAAAGATGTTATCTCGAAATTAGAGGACGAGTTGGAGAAACCGAAACAACTGCTTGACGATGTAAAATATAGGGTTGAATGGCATAAGTATCAAGAACGTCA ] [+] EMBL CD163127 [ CTATTCCTAGTGCTGCTCGTCTTGCTCAAGATACTCCAAAATCAATTCAGGAAACATTTACTCCCAAGGATCCACCAGCCGAATTTGAATTTGTTTACGATCCACCTTCTATTAATGCAGTTGATATTGACATAATAAAACTTACAGCACAATTTGTTGCAAGAAACGGTCGGCAATTTTTAACTCAGTTAATGAGTCGAGAACAGAGGAATTATCAGTTTGACTTCCTCCGTGCTCAGCACAGTATGTTTGGTTATTTTACAAAACTTGTGGAACAGTACACTAAAATCTTGATACCACCTAAAGATGTTATCTCGAAATTAGAGGACGAGTTAGAGAAACCGAAACAACTGCTTGACGATGTAAAATATAGGGTTGAATGGCATAAGTATCAAGAACGTCc ] [+] EMBL CD163094 [ CTATTCCTAGTGCTGCTCGTCTTGCTCAAGATACTCCAAAATCAATTCAGGAAACATTTACTCCCAAGGATCCACCAGCCGAATTTGAATTTGTTTACGATCCACCTTCTATTAATGCAGTTGATATTGACATAATAAAACTTACAGCACAATTTGTTGCAAGAAACGGTCGGCAATTTTTAACTCAGTTAATGAGTCGAGAACAGAGGAATTATCAGTTTGACTTCCTCCGTGCTCAGCACAGTATGTTTGGTTATTTTACAAAACTTGTGGAACAGTACACTAAAATCTTGATACCACCTAAAGATGTTATCTCGAAATTAGAGGACGAGTTAGAGAAACCGAAACAACTGCTTGACGATGTAAAATATAGGGTTGAATGGCATAAGTATCAAGAACGTCA ] [-] EMBL CD163488 [ TATTCCTAGTGCTGCTCGTCTTGCTCAAGATACTCCAAAATCAATTCAGGAAACATTTACTCCCAAGGATCCACCAGCCGAATTTGAATTTGTTTACGATCCACCTTCTATTAATGCAGTTGATATTGACATAATAAAACTTACAGCACAATTTGTTGCAAGAAACGGTCGGCAATTTTTAACTCAGTTAATGAGCCGAGAACAGAGGAATTATCAGTTTGACTTCCTCCGTGCTCAGCACAGTATGTTTGGTTATTTTACAAAACTTGTGGAACAGTACACTAAAATCTTGATACCACCTAAAGATGTTATCTCGAAATTAGAGGACAAGTTAGAGAAACCGAAACAACTGCTTGACGATGTAAAATATAGGGTTGAATGGCATAAGTATCAAGAACGTCAa ] [-] EMBL CD116878 [ TACTCCCAAGGATCCACCAGCCGAATTTGAATTTGTTTATGATCCACCTTCCATTAATGCAGTTGATATTGACATAATAAAACTTACAGCACAATTTGTTGCAAGAAACGGTCGACAATTTTTAACTCAGTTAATGAGTCGAGAACAGAGAAATTATCAGTTTGACTTCCTCCGTGCTCAGCACAGTATGTTTGGTTATTTTACAAAACTTGTGGAACAGTACACTAAAAT ] [-] EMBL CD129526 [ TGAATTTGTTTATGATCCACCTTCCATTAATGCAGTTGATATTGACATAATAAAACTTACAGCACAATTTGTTGCAAGAAACGGTCGACAATTTTTAACTCAGTTAATGAGTCGAGAACAGAGAAATTATCAGTTTGACTTCCTCCGTGCTCAGCACAGTATGTTTGGTTATTTTACAAAACTTGTGGAACAGTACACTAAAATCTTGATACCACCTAAAAATGTTATTTCGAAATTGGAGGACGAGTTAGAGAAACCGAAACAACTGCTTGACGATGTAAAATATAGGGTTGAATGGCATAAGTATCAAGAACGTCAGCGTAAGCGTGAGGAGGAGGCAGCAGAACGTGAACGTGTGGC GCACGCTATGATTGATTGGCACGACTTCGTGGTTGTTGAAACAGTTGACTTTC AACCAGGCGAAGCAGGCAATTTCCCTCT ] [+] EMBL CD152512 [ TACAGCACAATTTGTTGCAAAAAACGGTCGGCAATTATTAACTCACCTAATGAGTCAAGACCACAGGAATTATCACCTGGACTTCCTCCGTGCTCAGCACAGTATGTTTGGTTATTTTACAAAACTTGTGGAACAGTACACTAAAATCTTGATACCACCTACACATGTTATCTCGAAATTACAGGACGAGTTAGAGAAACCGAAACAACTGCTTGACGATGTAAAATATAGGGTTGAATGGCATAAGTATCAAGAACGTCAACGTAAGCGTGAGGAGGAAGCTGCAGAACGTGAACGTG ] [-] EMBL CD160134 [ GGTCGACAATTTTAAACTCAGTTAATGAGTCGAGAACAGAGAAATTATCAGTTTGACTTCCTCCGTGCTCAGCACAGTATGTTTGGTTATTTTACAAAACTTGTGGAACAGTACACTAAAATCTTGATACCACCTAGAAATGTTATTTCGAAAATGGAGGACGAGTTAGAGAAACCGAAACAACTGCTTGACGATGTAAAATATAGGGTTGAATGGCATAAGTATCAAGAACGTCAGCGTAAGCGTGAGGAGGAGGCAGCAGAACGTGAACGTCTGGCAGTACGCTATGATTGATTGGCACGACTTCGTGGTTGTTGAAACAGTTGACTTTC AACCAGGCGAAGCAGGCAATTTCCCTCTACCGACCACTCCTGATGAAGTTGGGGCACGCTTAA TAGTCCGAAGAAC ] [+] EMBL CD166115 [ ATTATCAGTTTGACTTCCTCCGTGCTCAGCACAGTATGTTTGGTTATTTTACAAAACTTGTGGAACAGTACACTAAAATCTTGATACCACCTAAAGATGTTATCTCGAGATTGGAGGACGAGTTAGAGAAACCGAAACAACTGCTTGACGATGTAAAATATAGGGTTGAATGGCATAAGTATCAAGAACGTCAACGTAAGCGTGAGGAGGAGGCTGCAGAACGTGAACGTGTGGC GTACGCAATGATTGATTGGCACGACTTCGTGGTTGTTGAAACAGATGACTTTCAAACCA ACGAAACAGGTAATTTCNCTTTACCGACTACTCC ] [+] EMBL CD193304 [ GAGAAACCGAAACAACTGCTTGACGATGTAAAATATAGGGTTGAATGGCATAAGTATCAAGAACGTCAGCGTAAGCGTGAGGAGGAGGCAGCAGAACGTGAACGTGTGGC GTACGCTATGATTGATTGGCACGACTTCGTGGTTGTTGAAACAGTTGACTTTC AACCAGGCGAAGCAGGCAATTTCCCT ] [-] EMBL CD160216 [ aCAGCAGAACGTGAACGTGTGGC GTACGCTATGATTGATTGGCACGACTTCGTGGTTGTTGAAACAGTTGACTTTC AACCAGGCGAAGCAGGCAATTTCCCTCTACCGACCACTCCTGATGAAGTTGGGGCACGCTTACATAG CCGAAGAAC ] [+] EMBL CD078722 [ GTGTGGC GTACGCAATGATTGATTGGCACGACTTCGTGGTTGTTGAAACAGTTGACTTTC AACCAAACGAAACAGGTAATTTCCCTTTACCGACTACTCCTGATGAAGTTGGAGCACGCTTAC TAG CCGAAGAACGTGGTCTTCAGCCTCCTTTGAAGCCCTCAGCCCCTCCACCCCCCGGTTCACTTGGATTAATGCCAACTGATATAGATGATGATACAAGTGATCAGGAATTAGATGAATCAGATGATGAAAATGAAGCTTCTGGATTTTCTCAACCTAAAGGCCGAGGTCTGGTCAATCATAGCCCTCTACCATATCCCGATGAGACAGAAAAGCTGGTTAGTGATGATATCCCAACCCCACCTGTTACTAATATGACTGATATAGCTGGAGAAGATGATATGGAGTTATCAGATGATGAGAATATTGCCGAAGAACAGGTTCAACAAACAAAATTATCAACAAAACAGGTACCATTGTCTTCTGATCAAGTCATTATTCGACATGACTACGATCCANAAGCCACAAGTATTAGAAGAGCAGAGGATTCTGTGCTTTTGGTATCACCTTTCACT ] [-] EMBL CD158686 [ TCGTGGTTGTTGAAACAGTTGACTTTC AACCAGGCGAAGCAGGCAATTTCCCTCTACCGACCACTCCTGATGAAGTTGGGGCACGCTTAC TAG CCGAAGAAC ] [+] EMBL CD115679 [ ctggcacgtTTGAAACAGTTGACTTTC AACCAAACGAAACAGGTAATTTCCCTTTACCGACTACTCCTGATGAAGTTGGAGCACGCTTAC TAG CCGAAGAACGTGGTCTTCAGCCTCCTTTGAAGCCCTCAGCCCCTCCACCCCCCGGTTCACTTGGATTAATGCCAACTGATATAGATGATGATACACGTGATCAGGAATTAGATGAATCACATGATGAAAATGACGCTcc ] [+] EMBL CD088539 [ TGATACAAGTGATCAGGAATCAGATGGATCAGATATTGAAAATGAAGCTTCTGGGTCTTCTCAAACTAAAGGCCAAGGTTTAGTCAACCATAGCCCTCTACCATACCCTGATGAGACAGAAAAACTGGTTACTGATGATATCCCGACCCCACCTGATACAAATATGACTGGCATAGCTGGAGAAGATGATATGGAGTTGTCAGATGATGAGAATGTTGTTGAAGAGCCTGTTCAAAAAACAAAAGTATCAGCAAAACAGGTACCATTGCCTTCTGATCAAGTCATTATTCGACATGACTACGATCCAAAAGCTACAAATATTAGAAGAGCAGAGAATTCTGTGCTTTTGGTATCACCTTTCACTGGCGAGAAGATTCCTGCCAACCAAGCTCCGAAACATATTAAGGTTGGGCTACTCGATCCTAAGTGGGTTGAACAGCGTGATCGAGAGATTCGCGAGAAACGTGAACAAGAACAAGTTTATGCTGCGGGAAATCTGATTGATAGTAGCTTGAAGCAGCTTGCTGAGCGTCGTACAGACATTNTCGGTGTAGGAG ] [+] EMBL CD120172 [ GAAGCTTTTGGCTTTTCTCAACCTAAAGGCCGAGGTCTGGTCAATCATAGCCCTCTACCATATCCCGATGAGACAGAAAAGCTGGTTAGTGATGATATCCCAACCCCACCTGTTACTAATATGACTGATATAGCTG ] [-] EMBL CD094366 [ AGGTCTGGTCAATCATAGCCCTCTACCATATCCCGATGAGACAGAANAGCTGGTTAGTGATGATATCCCAACCCCACCTGTTACTAATATGACTGATATAGCTGGAGAAGATGATATGGAGTTATCAGATGATGAGAATATTGCCGAAGAACAGGTTCAACAAACAAAATTATCAACAAAACAGGTACCATTGTCTTCTGATCAAGTCATTATTCGACATGACTACGATCCAAAAGCCACAAGTATTAGAAGAGCAGAGGATTCTGTGCTTTTGGTATCACCTTTCACTGGCGAGAAGATTCCTGCCAACCAAGCTCCGAAACATATTAAGGTTGGGCTACTCGATCCTAAGTGGGTTGAACAGCGTGATCGAGAGGTTCGCGAGAAACGTGACCAAGAACAAGTTTATGCTGCGGGAAATCTGATTGATAGTAGCTTAAAGCAGCTTGCTGAGCGTCGTACAGACATTTTCGGTGTAGGAGTTGATGAAATTCA ] [+] EMBL CD112783 [ ACGATCCAAAAGCCACAAGTATTAGAAGAGCAGAGGATTCTGTGCTTTTGGTATCACCTTTCACTGGCGAGAAGATTCCTGCCAACCAAGCTCCGAAACATATTAAGGTTGGGCTACTCGATCCTAAGTGGGTTGAACAGCGTGATCGAGAGGTTCGCGAGAAACGTGACCAAGAACAAGTTTATGCTGCGGGAAATCTGATTGATAGTAGCTTAAA ] [-] EMBL CD181248 [ GATCGAGAGGTTCGCGAGAAACGTGACCAAGAACAAGTTTATGCTGCGGGAAATCTGATTGATAGTAGCTTAAAGCAGCTTGCTGAGCGTCGTACAGACATTTTCGGTGTAGGAGCTGATGAAATTCAAATTGGCAAGAAATTGGGAGAACAAGAAATACTCAAGTCTGATAAGCTAATTTGGGATGGTTACTCTGCTACTACAGAGTGTTGTTGCCAAA ] [+] EMBL CD181647 [ TCGGTGTAGGAGTTGACGAAACTCAGATTGGCAAGAAATTGGGAGAACAAGAAATAGTCAAGTCTGATAAATTAATTTGGGATGGTTACTCTGCTACTACAGA TGTTGTTGCCAAAAGAAACTTAGAAGCGGTTACTGTTAAAGATAATCTGGATTTATTAGAGTT ] [-] EMBL CD117427 [ AATTTGGGATGGTTACTCTGCTACTACAGA TGTTGTTGCCAAAAGAAACTTAGAAGCAGTTACTGTTAAAGATAGGCTGAATTTATTAGAGTTTCAACAGAAATTGGATTCTGCTCGCGATAAAATTGGTCCTCAAAGTGGGGTGCTCCCTGCTCTGGGCATTATTCCTTCGGTACTTCATAAGCCGACAATATTGTTGCCACCACCGTCAATACAAAGTGGAGTTACACAACCTCCACCGCCCCCACCTCCTCCTGGTCTTGTAATGCTTTCCAGTGCTCCACC] [-] EMBL CD117429 [ AATTTGGGATGGTTACTCTGCTACTACAGA TGTTGTTGCCAAAAGAAACTTAGAAGCAGTTACTGTTAAAGATAGGCTGAATTTATTAGAGTTTCAACAGAAATTGGATTCTGCTCGCGATAAAATTGGTCCTCAAAGTGGGGTGCTCCCTGCTCTGGGCATTATTCCTTCGGTACTTCATAAGCCGACAATATTGTTGCCACCACCGTCAATACAAAGTGGAGTTACACAACCTCCACCGCCCCCACCTCCTCCTGGTCTTGTAATGCTTTCCAGTGCTCCACC] [+] EMBL CD136243 [ AACTTAGAAGCGGTTACTGTTAAAGATAATCTGGATTTATTAGAGTTTCAACAGAAGTTGGATTCTGCTCGCGATAAAATTGGTCCTCAAAGTGGAGTGCTCCCTGCTCTAGGCATTATTCCTTCG ] consensusID : consensus_11153#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 505 fasta sequence [TGTGATTTGTTGCATGATGTTACCTGTCGAAGAACAACAGGGTGATAAACCTATCCAACCTAAAATTGGTATAATATATCCTCCACCTGAAGTAAGGAATATCGTCGATAAAACGGCCAGTTTTGTAGCACGTAATGGTCCAGACTTTGAATCTCGTATTCGTCAAAATGAAATCAGTAATCCAAAGTTTAATTTTCTGAATCCGGCTGATCCATACCACGCATATTATCAACACAAGGTTCGAGAGTTTGCTGAAGGAAGAACACCAGAACCTGCTGCTCTAAAATTGACTATTCCTAGTGCTGCTCGTATTACTCANGATACTTCGAAATCGATTCAAGAAACATTTACTCCCAAGGATCCACCAGCCGAATTTGAATTTGTTTATGATCCACCTTCCATTAATGCAGTTGATATTGACATAATAAAACTTACAGCACAATTTGTTGCAAGAAACGGTCGACAATTTTTAACTCAGTTAATGAGTCGAGAACAGAGAAATTTT] [+] EMBL AI976086 [TGTGATTTGTTGCATGATGTTACCTGTCGAAGAACAACAGGGTGATAAACCTATCCAACCTAAAATTGGTATAATATATCCTCCACCTGAAGTAAGGAATATCGTCGATAAAACGGCCAGTTTTGTAGCACGTAATGGTCCAGACTTTGAATCTCGTATTCGTCAAAATGAAATCAGTAATCCAAAGTTTAATTTTCTGAATCCGGCTGATCCATACCACGCATATTATCAACACAAGGTTCGAGAGTTTGCTGAAGGAAGAACACCAGAACCTGCTGCTCTAAAATTGACTATTCCTAGTGCTGCTCGTATTACTCANGATACTTCGAAATCGATTCAAGAAACATTTACTCCCAAGGATCCACCAGCCGAATTTGAATTTGTTTATGATCCACCTTCCATTAATGCAGTTGATATTGACATAATAAAACTTACAGCACAATTTGTTGCAAGAAACGGTCGACAATTTTTAACTCAGTTAATGAGTCGAGAACAGAGAAATTTT] consensusID : consensus_11153#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 463 fasta sequence [TGTTACAAGCGATCAGGAATCAGATGGATCAGATATTGANNNNGAAGCTTCTGGGTCTTCTCAAACTAAAGGCCAAGGTTTAGTCAACCATAGCCCTCTACCATACCCTGATGAGACAGAAAAACTGGTTACTGATGATATCCCGACCCCACCTGATACAAATCCTTCCGGCATAGNTGGAGAAGATGATATGGAGTTGTCAGATGATGAGAATGTTGTTGAAGAGCCTGTTCAAAAAACAAAAGTATCAGCAAAACAGGTACCATTGCCTTCTGATCAAGTCATTATTCGACATGACTACGATCCAAAAGCTACAAATATTAGAAGAGCAGAGAATTCCACGCTTTTGGTATCACCTTTCACTGGCGAGAAGATTCCTGCCAACCAAGCTCCGAAACATATTAAGGTTGGGCTACTCGATCCTAAGTGGGTTGAACAGCGTGATCGAGAGATTCGCGAGAAA] [+] EMBL CD088562 [TGTTACAAGCGATCAGGAATCAGATGGATCAGATATTGANNNNGAAGCTTCTGGGTCTTCTCAAACTAAAGGCCAAGGTTTAGTCAACCATAGCCCTCTACCATACCCTGATGAGACAGAAAAACTGGTTACTGATGATATCCCGACCCCACCTGATACAAATCCTTCCGGCATAGNTGGAGAAGATGATATGGAGTTGTCAGATGATGAGAATGTTGTTGAAGAGCCTGTTCAAAAAACAAAAGTATCAGCAAAACAGGTACCATTGCCTTCTGATCAAGTCATTATTCGACATGACTACGATCCAAAAGCTACAAATATTAGAAGAGCAGAGAATTCCACGCTTTTGGTATCACCTTTCACTGGCGAGAAGATTCCTGCCAACCAAGCTCCGAAACATATTAAGGTTGGGCTACTCGATCCTAAGTGGGTTGAACAGCGTGATCGAGAGA ] [+] EMBL CD201656 [ gactGGCATAGCTGGAGAAGATGATATGGTGTTGTCAGATGATGAGAATGTTGTTGAAGAGCCTGTTCAAAAAACAAAAGTATCAGCAAAACAGGTACCATTGCCTTCTGATCAAGTCATTATTCGACATGACTACGATCCAAAAGCTACAAATATTAGAAGAGCAGAGAATTCTGTGCTTTTGGTATCACCTTTCACTGGCGAGAAGATTCCTGCCAACCAAGCTCCGAAACATATTAAGGTTGGGCTACTCGATCCTAAGTGGGTTGAACAGCGTGATCGAGAGATTCGCGAGAAA] consensusID : consensus_11153#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 167 fasta sequence [CCATTTAGATAACNAANCTAAAAATAAGATCTGCTAACAAGCATAAACTGACTTGACATCATACCAACAACTAACTAGTGTAATACAAGGTAATTCGCCCAACGAATTCCTACAGGATGTATTTTAGATACCAAGAAAATAAACTAAAACCTAAGGGAAATGGATAG] [+] EMBL CD201675 [CCATTTAGATAACNAANCTAAAAATAAGATCTGCTAACAAGCATAAACTGACTTGACATCATACCAACAACTAACTAGTGTAATACAAGGTAATTCGCCCAACGAATTCCTACAGGATGTATTTTAGATACCAAGAAAATAAACTAAAACCTAAGGGAAATGGATAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11153#0 TACATCATTCGTTGGGCAAATTACCCTGTATTTACATAAGTTAGTTATTGGCATAATGTC 60 consensus_11153#1 ------------------------------------------------------------ consensus_11153#2 ------------------------------------------------------------ consensus_11153#3 ------------------------------------------------------------ consensus_11153#0 AAGTCAGTTTATGCTTGTTAGCAGATCTTATTTTTAGTCTCGTTATCTGAATGTCTGACA 120 consensus_11153#1 ------------------------------------------------------------ consensus_11153#2 ------------------------------------------------------------ consensus_11153#3 ------------------------------------------------------------ consensus_11153#0 ACTCAGAAATTTATATTTGTGCATAATGTTTAGTTGTTTTGAATATCATTGCAACAACTG 180 consensus_11153#1 -----------------------------------------------------------T 1 consensus_11153#2 ------------------------------------------------------------ consensus_11153#3 ------------------------------------------------------------ consensus_11153#0 GTACTTTATTTTGTCGATGTCACCTGTCGAAGAACAACAGGGCGATAAACCTATCCAACC 240 consensus_11153#1 GTGATTTGTTGCAT-GATGTTACCTGTCGAAGAACAACAGGGTGATAAACCTATCCAACC 60 consensus_11153#2 -----------------TGTTACAAG-CGATCAGGAATCAGATGGATCAGATATTGANNN 42 consensus_11153#3 ---------------------------------CCATTTAGATAACNAANCTA--AAAAT 25 * * * ** * consensus_11153#0 TAAAATTGGTATAATATATCCTCCACCTGAAGTAAGGAATATCGTCGATAAAACGGCCAG 300 consensus_11153#1 TAAAATTGGTATAATATATCCTCCACCTGAAGTAAGGAATATCGTCGATAAAACGGCCAG 120 consensus_11153#2 NGAAGCTTCTGGG---TCTTCTCAAACTAAAGGCCAAGGTTTAGTCAACCA------TAG 93 consensus_11153#3 AAGATCTGCTAACAAGCATAAACTGACTTGA---CATCATACCAACAACTA-------AC 75 * * * * * ** * * * * * * consensus_11153#0 TTTTGTAGCACGTAATGGTCCAGACTTTGAATCTCGTATTCGTCAAAATGAAATCAGTAA 360 consensus_11153#1 TTTTGTAGCACGTAATGGTCCAGACTTTGAATCTCGTATTCGTCAAAATGAAATCAGTAA 180 consensus_11153#2 CCCTCTACCATACCCTGATG-AGACAGAAAAACTGGTTACTGATGATATCCCGACCCCA- 151 consensus_11153#3 TAGTGTAATACAAGGTAATTCGCCCAACGAATTCC-TACAGGATGTATTTTAGATACCAA 134 * ** * * * * ** * * * * consensus_11153#0 TCCAAAGTTTAATTTTCTGAATCCGGCTGATCCATACCACGCATATTATCAACACAAGGT 420 consensus_11153#1 TCCAAAGTTTAATTTTCTGAATCCGGCTGATCCATACCACGCATATTATCAACACAAGGT 240 consensus_11153#2 -CCTGATACAAATCCTTCCGGCATAGNTGGAGAAGATGAT--ATGGAGTTGTCAGATGAT 208 consensus_11153#3 ---GAAAATAAACTA---AAACCTAAGGGAAATGGATAG--------------------- 167 * ** * * consensus_11153#0 TCGAGAGTTTGCTGAAGGAAGAACACCAGAACCTGCTGCTCTAAAATTGACTATTCCTAG 480 consensus_11153#1 TCGAGAGTTTGCTGAAGGAAGAACACCAGAACCTGCTGCTCTAAAATTGACTATTCCTAG 300 consensus_11153#2 GAGAATGTT-GTTGAAGAGCCTGTTCAAAAAACAAAAGTATCAGCAA-AACAGGTACCAT 266 consensus_11153#3 ------------------------------------------------------------ consensus_11153#0 TGCTGCTCGTATTACTCAGGATACTTCGAAAT--CGATTCAAGAAACATTTACTCCCAAG 538 consensus_11153#1 TGCTGCTCGTATTACTCANGATACTTCGAAAT--CGATTCAAGAAACATTTACTCCCAAG 358 consensus_11153#2 TGCCTTCTGATCAAGTCATTATTCGACATGACTACGATCCAAAAGCTACAAATATTAGAA 326 consensus_11153#3 ------------------------------------------------------------ consensus_11153#0 GATCCACCAGCCGAATTTGAATTTGTTTATGATCCACCTTCCATTAATGCAGTTGATATT 598 consensus_11153#1 GATCCACCAGCCGAATTTGAATTTGTTTATGATCCACCTTCCATTAATGCAGTTGATATT 418 consensus_11153#2 GAGCAGA-----GAATTCCACGCTTTTGGTA--TCACCTTTCACTGGCG-AGAAGATTCC 378 consensus_11153#3 ------------------------------------------------------------ consensus_11153#0 GACATAATAAAACTTACAGCACAATTTGTTGCAAGAAACGGTCGACAATTTTTAACTCAG 658 consensus_11153#1 GACATAATAAAACTTACAGCACAATTTGTTGCAAGAAACGGTCGACAATTTTTAACTCAG 478 consensus_11153#2 TGC-CAACCAAGCTC----CGAAACATATT--AAGGTTGGGCTACTCGATCCTAAGTGGG 431 consensus_11153#3 ------------------------------------------------------------ consensus_11153#0 TTAATGAGTCGAGAACAGAGAAATTATCAGTTTGACTTCCTCCGTGCTCAGCACAGTATG 718 consensus_11153#1 TTAATGAGTCGAGAACAGAGAAATTTT--------------------------------- 505 consensus_11153#2 TTGAACAG-CGTGATC-GAGAGATTCGCGAGAAA-------------------------- 463 consensus_11153#3 ------------------------------------------------------------ consensus_11153#0 TTTGGTTATTTTACAAAACTTGTGGAACAGTACACTAAAATCTTGATACCACCTAAAAAT 778 consensus_11153#1 ------------------------------------------------------------ consensus_11153#2 ------------------------------------------------------------ consensus_11153#3 ------------------------------------------------------------ consensus_11153#0 GTTATTTCGAAATTGGAGGACGAGTTAGAGAAACCGAAACAACTGCTTGACGATGTAAAA 838 consensus_11153#1 ------------------------------------------------------------ consensus_11153#2 ------------------------------------------------------------ consensus_11153#3 ------------------------------------------------------------ consensus_11153#0 TATAGGGTTGAATGGCATAAGTATCAAGAACGTCAGCGTAAGCGTGAGGAGGAGGCAGCA 898 consensus_11153#1 ------------------------------------------------------------ consensus_11153#2 ------------------------------------------------------------ consensus_11153#3 ------------------------------------------------------------ consensus_11153#0 GAACGTGAACGTGTGGCGTACGCTATGATTGATTGGCACGACTTCGTGGTTGTTGAAACA 958 consensus_11153#1 ------------------------------------------------------------ consensus_11153#2 ------------------------------------------------------------ consensus_11153#3 ------------------------------------------------------------ consensus_11153#0 GTTGACTTTCAACCAGGCGAAGCAGGCAATTTCCCTCTACCGACCACTCCTGATGAAGTT 1018 consensus_11153#1 ------------------------------------------------------------ consensus_11153#2 ------------------------------------------------------------ consensus_11153#3 ------------------------------------------------------------ consensus_11153#0 GGGGCACGCTTACTAGCCGAAGAACGTGGTCTTCAGCCTCCTTTGAAGCCCTCAGCCCCT 1078 consensus_11153#1 ------------------------------------------------------------ consensus_11153#2 ------------------------------------------------------------ consensus_11153#3 ------------------------------------------------------------ consensus_11153#0 CCACCCCCCGGTTCACTTGGATTAATGCCAACTGATATAGATGATGATACAAGTGATCAG 1138 consensus_11153#1 ------------------------------------------------------------ consensus_11153#2 ------------------------------------------------------------ consensus_11153#3 ------------------------------------------------------------ consensus_11153#0 GAATTAGATGAATCAGATGATGAAAATGAAGCTTCTGGATTTTCTCAACCTAAAGGCCGA 1198 consensus_11153#1 ------------------------------------------------------------ consensus_11153#2 ------------------------------------------------------------ consensus_11153#3 ------------------------------------------------------------ consensus_11153#0 GGTCTGGTCAATCATAGCCCTCTACCATATCCCGATGAGACAGAAAAGCTGGTTAGTGAT 1258 consensus_11153#1 ------------------------------------------------------------ consensus_11153#2 ------------------------------------------------------------ consensus_11153#3 ------------------------------------------------------------ consensus_11153#0 GATATCCCAACCCCACCTGTTACTAATATGACTGATATAGCTGGAGAAGATGATATGGAG 1318 consensus_11153#1 ------------------------------------------------------------ consensus_11153#2 ------------------------------------------------------------ consensus_11153#3 ------------------------------------------------------------ consensus_11153#0 TTATCAGATGATGAGAATATTGCCGAAGAACAGGTTCAACAAACAAAATTATCAACAAAA 1378 consensus_11153#1 ------------------------------------------------------------ consensus_11153#2 ------------------------------------------------------------ consensus_11153#3 ------------------------------------------------------------ consensus_11153#0 CAGGTACCATTGTCTTCTGATCAAGTCATTATTCGACATGACTACGATCCAAAAGCCACA 1438 consensus_11153#1 ------------------------------------------------------------ consensus_11153#2 ------------------------------------------------------------ consensus_11153#3 ------------------------------------------------------------ consensus_11153#0 AGTATTAGAAGAGCAGAGGATTCTGTGCTTTTGGTATCACCTTTCACTGGCGAGAAGATT 1498 consensus_11153#1 ------------------------------------------------------------ consensus_11153#2 ------------------------------------------------------------ consensus_11153#3 ------------------------------------------------------------ consensus_11153#0 CCTGCCAACCAAGCTCCGAAACATATTAAGGTTGGGCTACTCGATCCTAAGTGGGTTGAA 1558 consensus_11153#1 ------------------------------------------------------------ consensus_11153#2 ------------------------------------------------------------ consensus_11153#3 ------------------------------------------------------------ consensus_11153#0 CAGCGTGATCGAGAGGTTCGCGAGAAACGTGACCAAGAACAAGTTTATGCTGCGGGAAAT 1618 consensus_11153#1 ------------------------------------------------------------ consensus_11153#2 ------------------------------------------------------------ consensus_11153#3 ------------------------------------------------------------ consensus_11153#0 CTGATTGATAGTAGCTTAAAGCAGCTTGCTGAGCGTCGTACAGACATTTTCGGTGTAGGA 1678 consensus_11153#1 ------------------------------------------------------------ consensus_11153#2 ------------------------------------------------------------ consensus_11153#3 ------------------------------------------------------------ consensus_11153#0 GTTGATGAAATTCAAATTGGCAAGAAATTGGGAGAACAAGAAATACTCAAGTCTGATAAG 1738 consensus_11153#1 ------------------------------------------------------------ consensus_11153#2 ------------------------------------------------------------ consensus_11153#3 ------------------------------------------------------------ consensus_11153#0 CTAATTTGGGATGGTTACTCTGCTACTACAGATGTTGTTGCCAAAAGAAACTTAGAAGCG 1798 consensus_11153#1 ------------------------------------------------------------ consensus_11153#2 ------------------------------------------------------------ consensus_11153#3 ------------------------------------------------------------ consensus_11153#0 GTTACTGTTAAAGATAATCTGGATTTATTAGAGTTTCAACAGAAATTGGATTCTGCTCGC 1858 consensus_11153#1 ------------------------------------------------------------ consensus_11153#2 ------------------------------------------------------------ consensus_11153#3 ------------------------------------------------------------ consensus_11153#0 GATAAAATTGGTCCTCAAAGTGGGGTGCTCCCTGCTCTGGGCATTATTCCTTCGGTACTT 1918 consensus_11153#1 ------------------------------------------------------------ consensus_11153#2 ------------------------------------------------------------ consensus_11153#3 ------------------------------------------------------------ consensus_11153#0 CATAAGCCGACAATATTGTTGCCACCACCGTCAATACAAAGTGGAGTTACACAACCTCCA 1978 consensus_11153#1 ------------------------------------------------------------ consensus_11153#2 ------------------------------------------------------------ consensus_11153#3 ------------------------------------------------------------ consensus_11153#0 CCGCCCCCACCTCCTCCTGGTCTTGTAATGCTTTCCAGTGCTCCACC 2025 consensus_11153#1 ----------------------------------------------- consensus_11153#2 ----------------------------------------------- consensus_11153#3 ----------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||