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Schistosoma mansoni
cluster # 11179 cluster # 11179       Sequences # 38       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11179#0 length = 513 sequences # 3  
consensus_11179#1 length = 505 sequences # 30  
consensus_11179#2 length = 369 sequences # 5  

consensusID : consensus_11179#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 513
fasta sequence
                              [CAGGAGGAAATAGAGTAATAGAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTACACGGAAATGCTTCTAGTGGGGTATGACGAAAAATTAATCATTTACATTGATGATTATGAGAGGAATAA-CTATATGATGATCACAATTGACACGAAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCACTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACCTAGAAGTTTCTTATCAGCCTTCAACAAATCGCTTACGGTCTGTTAGGACCTTTGGGGACTATAAGAGGTCCTCCACAGGCAACAAGCAGCCAGAAAACAGTCATTACTGTTAATG]

[+] EMBL CD086073             [CAGGAGGAAATAGAGTAATAGAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTACACGGAAATGCTTCTAGTGGGGTATGACGAAAAATTAATCATTTACATTGATGATTATGAGAGGAATAA CTATATGATGATCACAATTGACACGAAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCACTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGCCCGAAAAGAGGGTTGACTTGAGTCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACCTAGAAGTTTCTTATCAGCCTTCAACAAATCGCTTACGGTCTGTTAGGACCTTTGGGGA                                                         ]
[+] EMBL CD134278             [                                                                                    ACGAAAAATTAATCATTTACATTGATGATTATGAGAGGAATAAGCTATATGATGATCACAATTGACACGAAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCACTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACCTAGAAGTTTCTTATCAGCCTTCAACAAATCGCTTACGGTCTGTTAGGACCTTTGGGGACTATAAGAGGTCCTCCACAGGCAACAAGCAGCCAGAAAACAGTCATTACTGTTAATG]
[+] EMBL CD134277             [                                                                                    ACGAAAAATTAATCATTTACATTGATGATTATGAGAGGAATAA CTATATGATGATCACAATTGACACGAAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCACTCTAATGGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACCTAGAAGTTTCTTATCAGCCTTCAACAAATCGCTTACGGTCTGTTAGGACCTTTGGGGACTATAAGAGGTCCTCCACAGCCAACAAGCAGCCAGAAAACAGTCATTACTGTTAATG]


>consensus_11179#0 CAGGAGGAAATAGAGTAATAGAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTACA CGGAAATGCTTCTAGTGGGGTATGACGAAAAATTAATCATTTACATTGATGATTATGAGA GGAATAACTATATGATGATCACAATTGACACGAAAAAACTGAGCTTCATATAAATGCATT AGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATT TTAAAGCACTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAA TATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCA AAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACCTAGAAGTTTCTTATCAGCCTTC AACAAATCGCTTACGGTCTGTTAGGACCTTTGGGGACTATAAGAGGTCCTCCACAGGCAA CAAGCAGCCAGAAAACAGTCATTACTGTTAATG



consensusID : consensus_11179#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 30
consensus length = 505
fasta sequence
                              [ACAGGAGGAAATAGAGTAATAGAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTACACGG-AAATGCTT-CTAGTGGGGTATG-ACG-AAAAATTAATCATTTACATTGATGATTATGAGAGGAATAACTATATGATGATCACAATTGACACG-AAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCA-CTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGACTATAAGAGGTCCTCCACAGCCAACAAGCAGCCAGAAAACAGTCATTACTGTTAATGGAACTTCGTAACCCATTTCCAAAAGACC]

[+] EMBL CD086209             [ACAGGAGGAAATAGAGTAATAGAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTACACGG AAATGCTT CTAGTGGGGTATG ACG AAAAATTAATCATTTACATTGATGATTATGAGAGGAATAACTATATGATGATCACAATTGACACG AAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCA CTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGA                                                                                     ]
[+] EMBL CD086227             [               GTAATACAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTACACGGTAAATGCTT CTAGTGGGGTATG ACGCAAAAATTAATCATTTACATTGATGATTATGAGAGGAATAACTATATGATGATCACAATTGACACG AAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCA CTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCATTATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGA                                                                                                                                                                     ]
[+] EMBL CD096038             [                TAATACAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTACACGG AAATGCTT CTAGCGGGGTATG ACG AGAAATTAATCATTTACATTGATGATTATGAGAGGAATAACTATATGATGATCACAATTGACACG AAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCA CTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGA                                                                                     ]
[+] EMBL CD086254             [                  ATAGAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTACACGG AAATGCTT CTAGTGGGGTATGAACG AAAAATTAATCATTTACATTGATGATTATGAGAGGAATAACTATATGATGATCACAATTGACACG AAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCA CTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGA                                                                                     ]
[+] EMBL CD095797             [                  ATAGAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTACACGG AAATGCTT CTAGTGGGGTATG ACG AAAAATTAATCATTTACATTGATGATTATGAGAGGAATAACTATATGATGATCACAATTGACACG AAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCA CTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGA                                                                                     ]
[+] EMBL CD095820             [                  ATAGAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTACACGG AAATGCTT CTAGTGGGGTATG ACG AAAAATTAATCATTTACATTGATGATTATGAGAGGAATAACTATATGATGATCACAATTGACACG AAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCA CTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGA                                                                                     ]
[+] EMBL CD095832             [                  ATAGAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTACACGG AAATGCTT CTAGTGGGGTATG ACG AAAAATTAATCATTTACATTGATGATTATGAGAGGAATAACTATATGATGATCACAATTGACACG AAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCA CTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGA                                                                                     ]
[+] EMBL CD095836             [                  ATAGAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTACACGG AAATGCTT CTAGTGGGGTATG ACG AAAAATTAATCATTTACATTGATGATTATGAGAGGAATAACTATATGATGATCACAATTGACACG AAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCA CTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGA                                                                                     ]
[+] EMBL CD095879             [                  ATAGAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTACACGG AAATGCTT CTAGTGGGGTATG ACG AAAAATTAATCATTTACATTGATGATTATGAGAGGAATAACTATATGATGATCACAATTGACACG AAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCA CTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGA                                                                                     ]
[+] EMBL CD095910             [                  ATAGAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTACACGG AAATGCTT CTAGTGGGGTATG ACG AAAAATTAATCATTTACATTGATGATTATGAGAGGAATAACTATATGATGATCACAATTGACACG AAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCA CTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGA                                                                                     ]
[+] EMBL CD095923             [                  ATAGAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTACACGG AAATGCTT CTAGTGGGGTATG ACG AAAAATTAATCATTTACATTGATGATTATGAGAGGAATAACTATATGATGATCACAATTGACACG AAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCA CTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGA                                                                                     ]
[+] EMBL CD095933             [                  ATAGAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTACACGG AAATGCTT CTAGTGGGGTATG ACG AAAAATTAATCATTTACATTGATGATTATGAGAGGAATAACTATATGATGATCACAATTGACACG AAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCA CTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGA                                                                                     ]
[+] EMBL CD095981             [                  ATAGAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTACACGG AAATGCTT CTAGTGGGGTATG ACG AAAAATTAATCATTTACATTGATGATTATGAGAGGAATAACTATATGATGATCACAATTGACACG AAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCA CTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGA                                                                                     ]
[+] EMBL CD096060             [                  ATAGAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTACACGG AAATGCTT CTAGTGGGGTATG ACG AAAAATTAATCATTTACATTGATGATTATGAGAGGAATAACTATATGATGATCACAATTGACACG AAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCA CTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGA                                                                                     ]
[+] EMBL CD095844             [                  ATAGAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTACACGG AAATGCTT CTAGTGGGGTATG ACG AAAAATTAATCATTTACATTGATGATTATGAGAGGAATAACTATATGATGATCACAATTGACACG AAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCA CTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTCGCAGGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGA                                                                                     ]
[+] EMBL CD096007             [                  ATAGAAACTTCTCTTAGTCTGCATAAAAGTTGCAAGTTTTACACGG AAATGCTT CTAGTGGGGTATG ACG AAAAAGTAATCATTTACATTGATGATTATGAGAGGAATAACTATATGATGATCACAATTGACACG AAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCA CTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTCAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGA                                                                                     ]
[+] EMBL CD095777             [                  ATAGAAACTTCTC TAGTCTGCATAAAATTTGCGAGTTTTACACGG AAATGCTT CTAGTGGGGTATG ACG AAAAATTAATCATTTACATTGATGATTATGAGAGGAATAACTATATGATGATCACAATTGACACGAAAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCA CTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGCTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGA                                                                                     ]
[+] EMBL CD095825             [                  ATAGAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTACACGG AAATGCTT CTAGTGGGGTATG ACG AAAAATTAATCATTTACATTGATGATTATGAGAGGAATAACTATATGATGATCACAATTGACACG AAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGAGGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCA CTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGA                                                                                     ]
[+] EMBL CD095839             [                  ATAGAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTACACGG AAATGCTT CTAGTGGGGTATG ACG AAAAATTAATCATTTACATTGATGATTATGAGAGGAATAACTATATGATGATCACAATTGACACG AAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGACTACTGATGAATTTTAAAGCA CTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGA                                                                                     ]
[+] EMBL CD095966             [                  ATAGAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTACACGG AAATGCTT CTAGTGGGGTATG ACG AAAAATTAATCATTTACATTGATGATTATGAGAGGAATAACTATATGATGATCACAATTGACACG AAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCA CTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGACGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGA                                                                                     ]
[+] EMBL CD095979             [                  ATAGAAACTTCTCTTAGTCTGCACAAAATTTGCAAGTTTTACACGG AAATGCTT CTAGTGGGGTATG ACG AAAAATTAATCATTTACATTGATGATTATGAGAGGAATAACTATATGATGATCACAATTGACACG AAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCA CTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGA                                                                                     ]
[+] EMBL CD095858             [                  ATAGAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTACACGG AAATGCTT CTAGTGGGGTATG ACG AAAAATTAATCATTTACATTGATGATTATGAGAGGAATAACTATATGATGATCACAATTGACACG AAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCA CTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGCTTGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGA                                                                                     ]
[-] EMBL CD095664             [                   TAGAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTACACGG AAATGCTT CTAGTGGGGTATG ACG AAAAATTAATCATTTACATTGATGATTATGAGAGGAATAACTATATGATGATCACAATTGACACG AAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCA CTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGAC                                                                                    ]
[+] EMBL CD188680             [                                                TGCAAGTTTTACACGG AAATGCTT CTAGTGGGGTATG ACG AAAAATTAATCATTTACATTGATGATTATGAGAGGAATAACTATATGATGATCACAATTGACACG AAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAGCAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCA CTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGACTATAAGAGGTCCTCCACAGCCAACAAGCAGCCAGAAAACAGTCATTACTGTTAATGGAACTTCGTAACCCATTTCCAAAAGACC]
[-] EMBL SMAA18517            [                                                   AAGTTTTACACGG AAATGCTTACTAGTGGGGTATG ACG AAAAATTAATCATTAACATTGATGATTATGAGAGGAATAACTATATGATGATCACAATTGACACG AAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGGTGATTACTGATGAATTTTAAAGCA CTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGA                                                                                                                                                                        ]
[+] EMBL CD144363             [                                                                             GTGGGGTATG ACG AAAAATTAATCATTTACATTGATGATTATGAGAGGAATAACTATATGATGATCACAATTGACACG AAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCA CTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGA                                                                                                                                                                                                                 ]
[+] EMBL CD095852             [                                                                                                   AATCATTTACATTGATGATTATGAGAGGAATAACTATATGATGATCACAATTGACACG AAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCA CTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGA                                                                                     ]
[+] EMBL CD095932             [                                                                                                      CATTTACATTGATGATTATGAGAGGAATAACTATATGATGATCACAATTGACACG AAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCA CTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGA                                                                                     ]
[+] EMBL CD134651             [                                                                                                                                                                                                                        CAGAAGATATGCGATGATTACTGATGAATTTTAAAGCA CTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAGGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAGTACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGACTATAAGAGGTCCTCCACAGCCAACAAGCAGCCAGAAAACAGTCATTACTGTTAATGGAACTTCGTAACCCATTTCCA       ]
[+] EMBL CD197959             [                                                                                                                                                                                                                                                    aaTTAAGGGAGCTATANTTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCACCCAAAAGAGGTAGCAAAATACTGAACAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGACTATAAGAGGTCCTCCACAGCCAACGAGCAGCCA                                                   ]


>consensus_11179#1 ACAGGAGGAAATAGAGTAATAGAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTAC ACGGAAATGCTTCTAGTGGGGTATGACGAAAAATTAATCATTTACATTGATGATTATGAG AGGAATAACTATATGATGATCACAATTGACACGAAAAAACTGAGCTTCATATAAATGCAT TAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAAT TTTAAAGCACTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCA ATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGC AAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGA CTATAAGAGGTCCTCCACAGCCAACAAGCAGCCAGAAAACAGTCATTACTGTTAATGGAA CTTCGTAACCCATTTCCAAAAGACC



consensusID : consensus_11179#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 369
fasta sequence
                              [ATAGAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTACACGGAAATGCTTATTGATGATTATGAGAGG-AATAACTATATGATGATCACAATTGACACGAAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCACTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGA]

[+] EMBL CD095994             [ATAGAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTACACGGAAATGCTTATTGATGATTATGAGAGGCAATAACTATATGATGATCACAATTGACACGAAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCACTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGA]
[+] EMBL CD096026             [ATAGAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTACACGGAAATGCTTATTGATGATTATGAGAGG AATAACTATATGATGATCACAATTGACACGAAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCACTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGA]
[+] EMBL CD095776             [ATAGAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTACACGGAAATGCTTATTGATGATTATGAGAGG AATAACTATATGATGATCACAATTGACACGAAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCACTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGA]
[+] EMBL CD086295             [                                                                                 TATGATGATCACAATTGACACGAAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCACTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGA]
[+] EMBL CD095808             [                                                                                   TGATGATCACAATTGACACGAAAAAACTGAGCTTCATATAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAATTTTAAAGCACTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGACCTTTGGGGA]


>consensus_11179#2 ATAGAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTACACGGAAATGCTTATTGAT GATTATGAGAGGAATAACTATATGATGATCACAATTGACACGAAAAAACTGAGCTTCATA TAAATGCATTAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTA CTGATGAATTTTAAAGCACTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTAT CTCGATGCAATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAA AGAGGTAGCAAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACGGTCTGTTAGGAC CTTTGGGGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11179#1      ACAGGAGGAAATAGAGTAATAGAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTAC 60
consensus_11179#2      ------------------ATAGAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTAC 42
consensus_11179#0      -CAGGAGGAAATAGAGTAATAGAAACTTCTCTTAGTCTGCATAAAATTTGCAAGTTTTAC 59
                                         ******************************************

consensus_11179#1      ACGGAAATGCTTCTAGTGGGGTATGACGAAAAATTAATCATTTACATTGATGATTATGAG 120
consensus_11179#2      ACGGAAATGCTT---------------------------------ATTGATGATTATGAG 69
consensus_11179#0      ACGGAAATGCTTCTAGTGGGGTATGACGAAAAATTAATCATTTACATTGATGATTATGAG 119
                       ************                                 ***************

consensus_11179#1      AGGAATAACTATATGATGATCACAATTGACACGAAAAAACTGAGCTTCATATAAATGCAT 180
consensus_11179#2      AGGAATAACTATATGATGATCACAATTGACACGAAAAAACTGAGCTTCATATAAATGCAT 129
consensus_11179#0      AGGAATAACTATATGATGATCACAATTGACACGAAAAAACTGAGCTTCATATAAATGCAT 179
                       ************************************************************

consensus_11179#1      TAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAAT 240
consensus_11179#2      TAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAAT 189
consensus_11179#0      TAGAACTGTGATGAGATACGTTGACAACAGGCAGAAGATATGCGATGATTACTGATGAAT 239
                       ************************************************************

consensus_11179#1      TTTAAAGCACTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCA 300
consensus_11179#2      TTTAAAGCACTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCA 249
consensus_11179#0      TTTAAAGCACTCTAATTGGCTCCCATTCACGTTGGAGAATGCGAATGGTATCTCGATGCA 299
                       ************************************************************

consensus_11179#1      ATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGC 360
consensus_11179#2      ATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGC 309
consensus_11179#0      ATATCGGTCCGAAAAGAGGGTTGACTTGAGCCATGGATGACATCAGCCAAAAGAGGTAGC 359
                       ************************************************************

consensus_11179#1      AAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAAC---------------------- 398
consensus_11179#2      AAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAAC---------------------- 347
consensus_11179#0      AAAATACTGAAGAGGTTGCAAGCATCAGTTGAATCAACCTAGAAGTTTCTTATCAGCCTT 419
                       **************************************                      

consensus_11179#1      ---------------GGTCTGTTAGGACCTTTGGGGACTATAAGAGGTCCTCCACAGCCA 443
consensus_11179#2      ---------------GGTCTGTTAGGACCTTTGGGGA----------------------- 369
consensus_11179#0      CAACAAATCGCTTACGGTCTGTTAGGACCTTTGGGGACTATAAGAGGTCCTCCACAGGCA 479
                                      **********************                       

consensus_11179#1      ACAAGCAGCCAGAAAACAGTCATTACTGTTAATGGAACTTCGTAACCCATTTCCAAAAGA 503
consensus_11179#2      ------------------------------------------------------------
consensus_11179#0      ACAAGCAGCCAGAAAACAGTCATTACTGTTAATG-------------------------- 513
                                                                                   

consensus_11179#1      CC 505
consensus_11179#2      --
consensus_11179#0      --
                         




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)