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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11189#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 31 consensus length = 1685 fasta sequence
[TCGCCGCGTTCATTGTTAACGGAGAAGTCAATTCGGTCCCAACGTATCCTCCGTCCTTTGTTTTGGCTAGACCACGAGTTTTGGCTTATACCATTGATCGACACTCAACCTCAAAACAATGACTGACGACATAGACGTTGAGGCCATGCTTGAGGATCATTACGCTCGGGAGGATACTCTGGGTCTACGATCCTCGTTGACGTCGTTGTGGACGTCTGGCCCTTTCCCACCCCAGCTGTAGTTATCAATAGATTATTTCGGGCTACTCGAAGTCCAATGGTCATCGAAGACGTGGTCGTTCACGTTCCAGGGATCGTAGCAGAAGACACAAGTCGCGCAGCAGGAGCAAGGAACGTCGACGGGATAAGAATCATGAATCCGACCGAGGACGACGTGAACGCCGCCATAGTTCGCGTGACCGGGATCGACATAGGTCTAGTAGAGATGACCACAGGCCGTCGCGGACCGAAAGACGTCAGAAATCTCCTGAACTTAGCCCAGAAGAGCGAGATGCACGAACTGTGTTCGTCTGGCAGCTTTC-TGCGCGCATTCGACAGCGAGACTTGGAGGACTTCTTCACTTCGGTGGGTAAAATCAGAGATGTTCGTTTAATCATGGACAACAAAACCAAAAGGTCGAAAGGCATAGCCTATGTTGAGTTCCGTGAAGTAGAGTCGGCTCAGCTGGCCCTTGGACTTACCGGCACTCGCTTATTAGGCGTTCCAATTCAGATTCAACAAAGCCACGCTGAGAAGAATCGAGTAAGCGCCACTCCCTCGTTGCCTCGGCCGTCACAACAGAACAGGGGGCCGATGAAATTATACATAGGTTCTTTACATTACAACATCACAGAAGAAATGTTAAAAGGTATATTTGAGCCCTTTGGAAAGATAGAGGACATAAAATTAATCAAGGACCCTACTACTAACCGTTCGCAAGGCTATGGCTTCGTAACGTACGTCAACAGTGATGACGCTAAAAAGGCACTGGATCAATTAAACGGGTTTGAGTTGGCTGGCCGACCGATGAAAGTGAATCATGTAACCGAACGCAGTGAGTATGCTTGTCTAAGCGCCCTGGACAACGATGAAGCTGACCGCTCAGGCGTTGATCTAGGCACCACTGGGAGATTAGCTTTAATGGCGAAACTCGCTGAAGGCACTGGCTTAG-AAATTCCCAAGG-CTGCCCTTGCTCAATTGCATATCGGGCAAAACAATCCGATACTAGGTTCAGCTGGAAGTGTTAGTTCATCATCCGCAATTGCTCCT-CCCGTGTGCA-CGCAATGTTTCATGCTATCCAATATGTTTGACCCACATGTTGCTACTCATTCGGTTTTCGAAGAAATACGTGACGATGTTATTGAGGAATGTACTAAGGCCGGCGGATGTCTCCACATTTTTGTTGATCGCACCAGTGCCCAAGGAAATGTTTACGTCAAATGTCCTAGTATAGCAGTCGCAACTCAATGCGTAAACATGTTACACGGTCGGTATTTCTCCG-GACGGTTGATTACTGCAGCATATGTTCCTTTAATAAATTATCACCAACTCTTCCCAGATTCCGTAACTGCAAAAACACTATTGCATCCTTCAAGTTAAAACTATTGTAAATAACCCAAATGTTTATTGACCACTGCATTTGTCAATATATTATCATTAATAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CD189290 [TCGCCGCGTTCATTGTTAACGGAGAAGTCAATTCGGTCCCAACGTATCCTCCGTCCTTTGTTTTGGCTAGACCACGAGTTTTGGCTTATACCATTGATCGACACTCAACCTCAAAACAATGACTGACGACATAGACGTTGAGGCCATGCTTGAGGATCATTACGCTCGGGAGGATACTCTGGGTCTACGATCCTCGTTGACGTCGTTGTGGACGTCTGGCCCTTTCCCACCCCAGCTGTAGTTATCAATAGATTATTTCGGGCTACTCGAAGTCCAATGGTCATCGAAGACGTGGTCGTTCACGTTCCAGGGATCGTAGCAGAAGACACAA ]
[+] EMBL CD184752 [ GCTCGGGAGGATACTCTGGGTCTACGATCCTCGTTGACGTCGTTGTGGACGTCTGGCCCTTTCCCACCCCAGCTGTAGTTATCAATAGATTATTTCGGGCTACTCGAAGTCCAATGGTCATCGAAGACGTGGTCGTTCACGTTCCAGGGATCGTAGCAGAAGACACAAGTCGCGCAGCAGGAGCAAGGAACGTCGACGGGATAAGAATCATGAATCCGACCGAGGACGACGTGAACGCCACCATAGTTCGCGTGACCGGGATCGACATAGGTCTAGTAGAGATGACCACAGGCCGTCGCGGACCGAAAGACGTCAGAAATCTCCTGAACTTAGCCCAGAAGAGCGAGATGCACGAACTGTGTTCGTCTGGCGGCTTTC TGCGCGCATTCGACAGCGAGACTTGGAGGACTTCTTCACTTCGGTGGGTAAAATCAGAGATGTTCGTTTAATCATGGACAACAAAACCAAAAGGT ]
[+] EMBL CD088120 [ CTACGATCCTCGTTGACGTCGTTGTGGACGTCTGGCCCTTTCCCACCCCAGCTGTAGTTATCAATAGATTATTTCGGGCTACTCGAAGTCCAATGGTCATCGAAGACGTGGTCGTTCACGTTCCAGGGATCGTAGCAGAAGACACAAGTCGCGCAGCAGGAGCAAGGAACGTCGACGGGATAAGAATCATGAATCCGACCGAGGACGACGTGAACGCCGCCATAGTTCGCGTGACCGGGATCGACATAGGTCTAGTAGAGATGACCACAGGCCGTCGCGGACCGAAAGACGTCAGAAATCTCCTGAACTTAGCCCAGAAGAGCGAGATGCACGAACTGTGTTCGTCTGGCAGCTTTC TGCGCGCATTCGACAGCGAGACTTGGAGGACTTCTTCACTTCGGTGGGTAAAATCAGAGATGTTCGTTTAATCATGGA ]
[+] EMBL CD116597 [ GTTATCAATAGATTATTTCGGGCTACTCGAAGTCCAATGGTCATCGAAGACGTGGTCGTTCACGTTCCAGGGATCGTAGCAGAAGACACAAGTCGCGCAGCAGGAGCAAGGAACGTCGACGGGATAAGAATCATGAATCCGACCGAGGACGACGTGAACGCCGCCATAGTTCGCGTGACCGGGATCGACATAGGTCTAGTAGAGATGACCACAGGCCGTCGCGGACCGAAAGACGTCAGAAATCTCCTGAACTTAGCCCAGAAGAGCGAGATGCACGAACTGTGTTCGTCTGGCAGCTTTC TGCGCGCATTCGACAGCGAGACTTGGAGGACT ]
[+] EMBL CD116486 [ GTTATCAATAGATTATTTCGGGCTACTCGAAGTCCAATGGTCATCGAAGACGTGGTCGTTCACGTTCCAGGGATCGTAGCAGAAGACACAAGTCGCGCAGCAGGAGCAAGGAACGTCGACGGGATAAGAATCATGAATCCGACCGAGGACGACGTGAACGCCGCCATAGTTCGCGTGACCGGGATCGACATAGGTCTAGTAGAGATGACCACAGGCCGTCGCGGACCGAAAGACGTCAGAAATCTCCTGAACTTAGCCCAGAAGAGCGAGATGCACGAACTGTGTTCGTCTGGCAGCTTTC TGCGCGCATTCGACAGCGAGACTTGGAGGACT ]
[+] EMBL CD143214 [ TCAATAGATTATTTCGGGCTACTCGAAGTCCAATGGTCATCGAAGACGTGGTCGTTCACGTTCCAGGGATCGTAGCAGAAGACACAAGTCGCGCAGCAGGAGCAAGGAACGTCGACGGGATAAGAATCATGAATCCGACCGAGGACGACGTGAACGCCGCCATAGTTCGCGTGACCGGGATCGACATAGGTCTAGTAGAGATGACCACAGGCCGTCGCGGACCGAAAGACGTCAGAAATCTCCTGAACTTAGCCCAGAAGAGCGAGATGCACGAACTGTGTTCGTCTGGCAGCTTTC TGCGCGCATTCGACAGCGAGACTTGGAGGACTTCTTCACTTCGGTGGGTAAAATCAGAGATGTTCGTTTAATCAT ]
[-] EMBL CD184793 [ ctcgggaGGGCTACTCGAAGTCCAATGGTCATCGAAGACGTGGTCGTTCACGTTCCAGGGATCGTAGCAGAAGACACAAGTCGCGCAGCAGGAGCAAGGAACGTCGACGGGATAAGAATCATGAATCCGACCGAGGACGACGTGAACGCCGCCATAGTTCGCGTGACCGGGATCGACATAGGTCTAGTAGAGATGACCACAGGCCGTCGCGGACCGAAAGACGTCAGGAATCTCCTGAACTTAGCCCAGAAGAGCGAGATGCACGAACTGTGTTCGTCTGGCAGCTTTC TGCGCGCATTCGACAGCGAGACTTGGAGGACTTCTTCACTTCGGTGGGTAAAATCAGAGATGTTCGTTTAATCATGGACAACAAAACCAAAAGGTCGAAAGGCATAGCCTATGTTGAGTTCCGTGAAG ]
[-] EMBL CD184716 [ GACGTGGTCGTTCACGTTCCAGGGATCGTAGCAGAAGACACAAGTCGCGCAGCAGGAGCAAGGAACGTCGACGGGATAAGAATCATGAATCCGACCGAGGACGACGTGAACGCCGCCATAGTTCGCGTGACCGGGATCGACATAGGTCTAGTAGAGATGACCACAGGCCGTCGCGGACCGAAAGACGTCAGAAATCTCCTGAACTTAGCCCAGAAGAGCGAGATGCACGAACTGTGTTCGTCTGGCAGCTTTC TGCGCGCATTCGACAGCGAGACTTGGAGGACTTCTTCACTTCGGTGGGTAAAATCAGAGATGTTCGTTTAATCATGGACAACAAAACCAAAAGGTCGAAAGGCATAGCCTATGTTGAGTTCCGTGAAG ]
[+] EMBL CD063394 [ CGTTCACGTTCCAGGGATCGTAGCAAAAGACACAAGTCGCGCAGCAGGAGCAAGGAACGTCGACGGGATAAGAATCATGAATCCGACCGAGGACGACGTGAACGCCGCCATAGTTCGCGTGACCGGGATCGACATAGGTCTAGTAGAGATGACCACAGGCCGTCGCGGACCGAAAGACGTCAGAAATCTCCTGAACTTAGCCCAGAAGAGCGAGATGCACGAACTGTGTTCGTCTGGCAGCTTTC TGCGCGCATTCGACAGCGA ]
[+] EMBL CD061374 [ tcgCACAAGTTGTTCA CAGGAGC AGGAACGTCGACGGGATAAGAATCATGAATCCGACCGAGGACGACGTGAACGCCGCCATAGTTCGCGTGACCGGGATCGACATAGGTCTAGTAGAGATGACCACAGGCCGTCGCGGACCGAAAGACGTCAGAAATCTCCTGAACTTAGCCCAGAAGAGCGAGATGCACGAACTGTGTTCGTCTGGCAGCTTTC TGCGCGCATTCGACAGCGAGACTTGGAGGACTTCTTCACTTCGGTGGGTAAAATCAGAGATGTT ]
[-] EMBL CD061226 [ GGAACGTCGACGGGATTAGAATCATGAATCCGACCGAGGACGACGTGAACGCCGCCATAGTTCGCGTGACCGGGATCGACATAGGTCTAGTAGAGATGACCACAGGCCGTCGCGGACCGAAAGACGTCAGAAATCTCCTGAACTTAGCCCAGAAGAGCGAGATGCACGAACTGTGTTCGTCTGGCAGCTTTCATGCGCGCATTCGACAGCGAGACCTGGAGGACTTCTTCACTTCGGTGGGTAAAATCAGAGATGTTCGTTTAATCA ]
[+] EMBL CD156188 [ GACCGAGGACGACGTGAACGCCGCCATAGTTCGCGTGACCGGGATCGACATAGGTCTAGTAGAGATGACCACAGGCCGTCGCGGACCGAAAGACGTCAGAAATCTCCTGAACTTAGCCCAGAAGAGCGAGATGCACGAACTGTGTTCGTCTGGCAGCTTTC TGCGCGCATTCGACAGCGAGACTTGGAGGACTTCTTCACTTCGGTGGGTAAAATCAGAGATGTTCGTTTAATCATGGACAACAAAACCAAAAGGTCGAAAGGCATAGCCTATGTTGA ]
[+] EMBL CD117257 [ ATGACCACAGGCCGTCGCGGACCGAAAGACGTCAGAAATCTCCTGAACTTAGCCCAGAAGAGCGAGATGCACGAACTGTGTTCGTCTGGCAGCTTTC TGCGCGCATTCGACAGCGAGACTTGGAGGACTTCTTCACTTCGGTGGGTAAAATCAGAGATGTTCGTTTAATCATGGACAACAAAACCAAAAGGTCGAAAGGCATAGCCTATGTTGAGTTCCGTGAAGTAGAGTCGGCTCAGCTGGCCCTTGGACTTACCGGCACTCGCTTATTAGGCGTTCCAATTCAGATTCAACAAAGCCACGCTGAGAAGAATCGAGTAAGCGCCACTCCCTCGTTGCCTCGGCCGTCACAACAGAACAGGGGGCCGATGAAATTATACATAGGTTCTTTACATTACAACATCACAGAAGAAATGTTAAAAGGTATATTTGAGCCCTTTGGAAAGATAGAGGACAAAAAATTAATCAAGGACCCTACTACTAACCGTTCGCAAGGCTATGGCTTCGTAACGTACGTCAACAGTGATGACGCTAAAAAGGCACTGGATCAATTAAACGGGTTTGAGTTGGCTGGCCGACCGATGAAAGT ]
[+] EMBL CD117200 [ ATGACCACAGGCCGTCGCGGACCGAAAGACGTCAGAAATCTCCTGAACTTAGCCCAGAAGAGCGAGATGCACGAACTGTGTTCGTCTGGCAGCTTTC TGCGCGCATTCGACAGCGAGACTTGGAGGACTTCTTCACTTCGGTGGGTAAAATCAGAGATGTTCGTTTAATCATGGACAACAAAACCAAAAGGTCGAAAGGCATAGCCTATGTTGAGTTCCGTGAAGTAGAGTCGGCTCAGCTGGCCCTTGGACTTACCGGCACTCGCTTATTAGGCGTTCCAATTCAGATTCAACAAAGCCACGCTGAGAAGAATCGAGTAAGCGCCACTCCCTCGTTGCCTCGGCCGTCACAACAGAACAGGGGGCCGATGAAATTATACATAGGTTCTTTACATTACAACATCACAGAAGAAATGTTAAAAGGTATATTTGAGCCCTTTGGAAAGATAGAGGACAAAAAATTAATCAAGGACCCTACTACTAACCGTTCGCAAGGCTATGGCTTCGTAACGTACGTCAACAGTGATGACGCTAAAAAGGCACTGGATCAATTAAACGGGTTTGAGTTGGCTGGCCGACCGATGAAAGT ]
[-] EMBL CD089477 [ CTGTGTTCGTCTGGCAGCTTTC TGCGCGCATTCGACAGGGAGACTTGGAGAACTTCTTCACTTCGGTGGGTAAAATCAGAGATGTTCGTTTAATCATGGACAACAAAACCAAAAGGTCGAAAGGCATAGCCTATGTTGAGTTCCGTGAAGTAGAGTCGGCTCAGCTGGCCCTTGGACTTACCGGCACTCGCTTATTAGGCGTTCCAATTCAGATTCAACAAAGCCACGCTGAGAAGAATCGAGTAAGCGCCACTCCCTCGTTGCCTCGGCCGTCACAACAGAACAGGGGGCCGATGAAATTATACATAGGTTCTTTACATTACAACATCACAGAAGAAATGTTAAAAGGTATATTTGAGCCCTTT ]
[+] EMBL CD165135 [ GAATCGAGTAAGCGCCACTCCCTCGTTGCCTCGGCCGTCACAACAGAACAGGGGGCCGATGAAATTATACATAGGTTCTTTACATTACAACATCACAGAAGAAATGTTAAAAGGTATATTTGAGCCCTTTGGAAAGATAGAGGACATAAAATTAATCAAGGACCCTACTACTAACCGTTCGCAAGGCTATGGCTTCGTAACGTACGTCAACAGTGATGACGCTAAAAAGGCACTGGATCAATTAAAC ]
[+] EMBL CD183867 [ GAATCGAGTAAGCGCCACTCCCTCGTTGCCTCGGCCGTCACAACAGAACAGGGGGCCGATGAAATTATACATAGGTTCTTTACATTACAACATCACAGAAGAAATGTTAAAAGGTATATTTGAACCCTTTGGAAAGATAGAGGACATAAAATTAATCAAGGACCCTACTACTAACCGTTCGCAAGGCTATGGCTTCGTAACGTACGTCAACAGTGATGACGCTAAAAAGGCACTGGATCAATTAAAC ]
[+] EMBL CD148175 [ ggaccttggCACAGAAGAAATGTTAAAAGGTATATTTGAGCCCTTTGGAAAGATAGAGGACATAAAATTAATCAAGGACCCTACTACTAACCGTTCGCAAGGCTATGGCTTCGTAACGTACGTCAACAGTGATGACGCTAAAAAGGCACTGGATCAATTAAACGGGTTTGAGTTGGCTGGCCGACCGATGAAAGTGAATCATGTAACCGAACGCAGTGAGTATGCTTGTCTAAGCGCCCTGGACAACGATGAAGCTGACCGCTCAGGCGTTGATCTAGGCACCACTGGGAGATTAGCTTTAATGGCGAAACTCGCTGAAGGCACTGGC ]
[+] EMBL CD182145 [ GGGTTTGAGTTGGCTGGCCGACCGATGAAAGTGAATCATGTAACCGAACGCAGTGAGTATGCTTGTCTAAGCGCCCTGGACAACGATGAAGCTGACCGCTCAGGCGTTGATCTAGGCACCACTGGGAGATTAGCTTTAATGGCAAAACTCGCTGAAGGCACTGTTTTAT AAATTCCCAAGG CTGCCCTTGCTCAATTGCATATCGGGCAAAACAATCGGATACTAGGTTCAGCTGAAAGTGTTAGTTCATCATCCGCAATTGCTCCT CCCGTGTGCA CGCAAT ]
[+] EMBL CD181943 [ GGGTTTGAGTTGGCTGGCCGACCGATGAAAGTGAATCATGTAACCGAACGCAGTGAGTATGCTTGTCTAAGCGCCCTGGACAACGATGAAGCTGACCGCTCAGGCGTTGATCTAGGCACCACTGGGAGATTAGCTTTAATGGCGAAACTCGCTGAAGGCACTGGCTTAG AAATTCCCAAGG CTGCCCTTGCTCAATTGCATATCGGGCAAAACAATCCGATACTAGGTTCAGCTGGAAGTGTTAGTTCATCATCCGCAATTGCTCCT CCCGTGTGCA CGCAAT ]
[+] EMBL CD182150 [ GGGTTTGAGTTGGCTGGCCGACCGATGAAAGTGAATCATGTAACCGAACGCAGTGAGTATGCTTGTCTAAGCGCCCTGGACAACGATGAAGCTGACCGCTCAGGCGTTGATCTAGGCACCACTGGGAGATTAGCTTTAATGGCGAAACTCGCTGAAGGCACTGGCTTAG AAATTCCCAAGG CTGCCCTTGCTCAATTGCATATCGGGCAAAACAATCCGATACTAGGTTCAGCTGGAAGTGTTAGTTCATCATCCGCAATTGCTCCT CCCGTGTGCA CGCAAT ]
[-] EMBL BG932488 [ AGTATGCTTGTCTAAGCGCCCTGGACAACGATGAAGCTGACCGCTCAGGCGTTGATCTAGGCACCACTGGGAGATTAGCTTTAATGGCGAAACTCGCTGAAGGCACTGGCTTAG AAATTCCCAAGG CTGCCCTTGCTCAATTGCATATCGGGCAAAACAATCCGATACTAGGTTCAGCTGGAAGTGTTAGTTCATCATCCGCAATTGCTCCTACCCCCGTCAATCACAATacc ]
[-] EMBL AI394866 [ cCTGACCGCTCAGGCGTTTATCTAGGCACCCCTGGGAGA TAGCTTTAATGGCGAAACTCGCTGAAGGCACTGCTTTAGAAAATTCCCAAGGNCT CCTTTGCTCAATTGCATATCGGGCAAAACAATCCGATACTAGGTTCAGCTGGAAGTGTTAGTTCATCATCCGCAATTGCTCCT CCCGTGTGCA CGCAATGTTTCATGCTATCCAATATGTTTGACCCACATGTTGCTACTCATTCGGTTTTCGAAGAAATACGTGACGATGTTATTGAGGAATGTACTAAGGCCGGCGGATGTCTCCACATTTTTGTTGATCGCACCAGTGCCCAAGGAAATGTTTACGTCAAATGTCCTAGTATAGCAGTCGCAACTCAATGCGTAAACATGTTACACGGTCGGTATTTCTCCG GACGGTTGATTACTGCAGCATATGTTCCTTTAATAAATTATCACCAACTCTTCCCAGATTCCGTAACTGCAAAAACACTATTGCATCCTTCAAGTTAAAACTATTGTAAATAACCCAAATGTTTATTGACCACTGCATTTGTCAATATATTATCATTAATAAAAAAAAAAAAAAAA ]
[+] EMBL CD170255 [ GGCACTGGCTTAG AAATTCCCAAGG CTGCCCTTGCTCAATTGCATATCGGGCAAAACAATCCGATACTAGGTTCAGCTGGAAGTG ]
[+] EMBL CD138910 [ GCTTAG AAATTCCCAAGG CTGCCCTTGCTCAATTGCATATCGGGCAAAACAATCCGATACTAGGTTCAGCTGGAAGTGTTAGTTCATCATCCGCAATTGCTCCT CCCGTGTGCA CGCAATGTTTCATGCTATCCAATATGTTTGACCCACATGTTGCTACTCATTCGGTTTTCGAAGAAATACGTGACGATGTTACTGAGGAATGTACTAAGGCCGGCGGATGTCTCCACATTTTTGTTGATCGCACCAGTGCCCAAGGAAATGTTTACGTCAAATGTCCTAGTATAGCAGTCGCAACTCAATGCGTAAACATGTTACACG ]
[-] EMBL AI395767 [ aTGCATATCGGGC AAACCATCCGATATTAGTTCCAGCTGGAAGTGTTAGTTCATCATCGGCAATTGCTCCT CCCGTGTGCA CGCAATGTTTCATGCTACCCAATATGTTTGACCCACATGTTGCTACTCATTCGGTTNTCGAAGAAATACGTGACGATGTTATTGAGGAATGTACTAAGCCCGGCGGATGTCTCCACATTTTTGTTGATCGCACCAGTGCCCAAGGAAATGTTTACGTCAAATGTCCTAGTATAGCAGTCGCAACTCAATGCGTAAACATGTTACACGGTCGGTATTTCTCCG GACGGTTGATTACTGCAGCATATGTTCCTTTAATAAATTATCACCAACTCTTCCCAGATTCCGTAACTGCAAAAACACTATTGCATCCTTCAAGTTAAAACTATTGTAAATAACCCAAATGTTTATTGACCACTGCATTTGTCAATATATTATCATTAATAAAAAAAAAAAAAAAAAAAA ]
[-] EMBL CD160743 [ TGCATATCGGGCAAAACAATCCGATACTAGGTTCAGCTGGAAGTGTTAGTTCATCATCCGCAATTGCTCCT CCCGTGTGCA CGCAATGTTTCATGCTATCCAATATGTTTGACCCACATGTTGCTACTCATTCGGTTTTCGAAGAAATACGTGACGATGTTATTGAGGAATGTACTAAGGCCGGCGGATGTCTCCACATTTTTGTTGATCGCACCAGTGCCCAAGGAAATGTTTACGTCAAATGTCCTAGTATAGCAGTCGTAACTCAATGCGTAAACATGTTACACGGTCGGTATTTCTCCG GACGGTTGATTACTGCAGCATATGTTCCTTTAATAAATTATCACCAACTCTTCCCAGATTCCGTAACTGCAAAAACA ]
[+] EMBL CD077789 [ CCGATACTAGGTTCAGCTGGAAGTGTTAGCTCATCATCCGCATTTGCTCCT CCCGTGTGCA CGCAATGTTTCATGCTATCCAATATGTTTGACCCACATGTTGCTACTCATTCGGTTTTCGAAGAAATACGTGACGATGTTATTGAGGAATGTACTAAGGCCGGCGGATGTCTCCACATTTTTGTTGATCGCACCAGTGCCCAAGGAAATGTTTACGTCAAATGTCCTAGTATAGCAGTCGCAACTCAATGCGTAAACATGTTACACGGTCGGTATTTCTCCG GACGGGTGATTACTGCAGCATATGTTCCTTTAATAAATGATCACCAACTCTTCCCAGATTCCGTAACTGCAAAAACACTATTGCATCCTTCAAG TAAAACTATTGT AATAACCC AATG TTATGGACCA TGCATTTGcattntt ]
[-] EMBL AI395441 [ ACTAGGTTCAGCTGGAAGTGTTAGTTCATCATCCGCAATTGCTCCT CCCGTGTGCA CGCAATGTTTCATGCTATCCAATATGTTTGACCCACATGTTGCTACTCATTCGGTTTTCGAAGAAATACGTGACGATGTTATTGAGGAATGTACTAAGGCCGGCGGATGTCTCCACATTTTTGTTGATCGCACCAGTGCCCAAGGAAATGTTTACGTCAAATGTCCTAGTATAGCAGTCGCAACTCAATGCGTAAACATGTTACACGGTCGGTATTTCTCCGAGACGGTTGATTACTGCAGCATATGTTCCTTTAATAAATTATCACCAACTCTTCCCAGATTCCGTAACTGCAAAAACACTATTGCATCCTTCAAGTTAAAACTATTGTAAATAACCCAAATGTTTATTGACCACTGCATTTGTCAATATATTATCATTAATAAAAAAAAAAAAAAAA ]
[-] EMBL CD182310 [ ATGCTATCCAATATGTTTGACCCTCATGTTGCTACTCATTCGGCTTTCGAAGAAATACGTGACGATGTTATTGAGGAATGTACTAAGGCCGGCGGATGTCTCCACATTTTTGTTG ]
[-] EMBL AI395500 [ cCCAGTGCCCAAGG AATGTTTACGTCAAATGTCCTAGTATAGCAGTCGCAACTCAATGCGTAAACATGTTACACGGTCGGTATTTCTCCG GACGGTTGATTACTGCAGCATATGTTCCTTTAATAAATTATCACCAACTCTTCCCAGATTCCGTAACTGCAAAAACACTATTGCATCCTTCAAGTTAAAACTATTGTAAATAACCCAAATGTTTATTGACCACTGCATTTGTCAATATATTNTCCTTATTTAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_11189#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 465 fasta sequence
[CGAGTTTTGGCTTATACCATTGATCGACACTCAACCTCAAAACAATGACTGACGACATAGACGTTGAGGCCATGCTTGAGGATCATTACGCTCGGGAGGATACTCTGGGTCTACGATCCTCGTTGACGTCGTTGTGGACGTCTGGCCCTTTCCCACCCCAGCTGTAGTTATCAATAGATTATTTCGGGCTACTCGAAGTCCAATGGTCATCGAAGACGTGGTCGTTCACGTTCCAGGGATCGTAGCAGAAGACACAAGTCGCGCAGCAGGAGCAAGGAACGTCGACGGGATAAGAATCATGAATCCGACCGAGGACGACGTGAACGCCGCCATAGTTCCGTGAAGTAGAGTCGGCTCAGCTGGCCCTTGGACTTACCGGCACTCGCTTAATAGGCGTTCCAATTCAGATTCAACAAAGCCACGCTGAGAAGAATCGAGTAAGCGCCACTCCCTCGTTGCCTCGGC]
[-] EMBL CD131316 [CGAGTTTTGGCTTATACCATTGATCGACACTCAACCTCAAAACAATGACTGACGACATAGACGTTGAGGCCATGCTTGAGGATCATTACGCTCGGGAGGATACTCTGGGTCTACGATCCTCGTTGACGTCGTTGTGGACGTCTGGCCCTTTCCCACCCCAGCTGTAGTTATCAATAGATTATTTCGGGCTACTCGAAGTCCAATGGTCATCGAAGACGTGGTCGTTCACGTTCCAGGGATCGTAGCAGAAGACACAAGTCGCGCAGCAGGAGCAAGGAACGTCGACGGGATAAGAATCATGAATCCGACCGAGGACGACGTGAACGCCGCCATAGTTCCGTGAAGTAGAGTCGGCTCAGCTGGCCCTTGGACTTACCGGCACTCGCTTAATAGGCGTTCCAATTCAGATTCAACAAAGCCACGCTGAGAAGAATCGAGTAAGCGCCACTCCCTCGTTGCCTCGGC]
[-] EMBL CD131231 [CGAGTTTTGGCTTATACCATTGATCGACACTCAACCTCAAAACAATGACTGACGACATAGACGTTGAGGCCATGCTTGAGGATCATTACGCTCGGGAGGATACTCTGGGTCTACGATCCTCGTTGACGTCGTTGTGGACGTCTGGCCCTTTCCCACCCCAGCTGTAGTTATCAATAGATTATTTCGGGCTACTCGAAGTCCAATGGCCATCGAAGACGTGGTCGTTCACGTTCCAGGGATCGTAGCAGAAGACACAAGTCGCGCAGCAGGAGCAAGGAACGTCGACGGGATAAGAATCATGAATCCGACCGAGGACGACGTGAACGCCGCCATAGTTCCGTGAAGTAGAGTCGGCTCAGCTGGCCCTTGGACTTACCGGCACTCGCTTATTAGGCGTTCCAATTCAGATTCAACAAAGCCACGCTGAGAAGAATCGAGTAAGCGCCACTCCCTCGTTGCCTCGGC]
[-] EMBL CD131249 [CGAGTTNTGGCTTATACCATTGATCGACACTCAACCTCAAAACAATGACTGACGACATAGACGTTGAGGCGATGCTTGAGGATCATTACGCTCGGGAGGATACTCTGGGTCTACGATCCTCGTTGACGTCGTTGTGGACGTCTGGCCCTTTCCCACCCCAGCTGTAGTTATCAATAGATTATTTCGGGCTACTCGAAGTCCAATGGTCATCGAAGACGTGGTCGTTCACGTTCCAGGGATCGTAGCAGAAGACACAAGTCGCGCAGCAGGAGCAAGGAACGTCGACGGGATAAGAATCATGAATCCGACCGAGGACGACGTGAACGCCGCCATAGTTCCGTGAAGTAGAGTCGGCTCAGCTGGCCCTTGGACTTACCGGCACTCGCTTAATACGCGTTCCAATTCAGATTCAACAAAGCCACGCTGAGAAGAATCGAGTAAGCGCCACTCCCTCGTTGCCTCGGC]
consensusID : consensus_11189#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 432 fasta sequence
[AGGTCGCCGCGTTCTTTGTTAACGGAGAAGTCAATTCGGTCCCAACGTATCCTCCGTCCTTTGTTTTGGCTAGACCACGAGTTTTGGCTTATACCATTGATCGACACTCAACCTCAAAACAATGACTGACGACATAGACGTTGAGGCCATGCTTGAGGATCATTACGCTCGGGAGGGCTACTCGAAGTCCAATGGTCATCGAAGACGTGGTCGTTCACGTTCCAGGGATCGTAGCAGAAGACACAAGTCGCGCAGCAGGAGCAAGGAACGTCGACGGGATAAGAATCATGAATCCGACCGAGGACGACGTGAACGCCGCCATAGTTCGCGTGACCGGGATCGACATA-GGTCTA-GTAGAAGTGACCACAGGCCGTCGCGGACCGAAAGACGTCAGAAATCGTATGTTCCTTTGTGTCCTAATTTATTTTAATT]
[-] EMBL CD094776 [AGGTCGCCGCGTTCTTTGTTAACGGAGAAGTCAATTCGGTCCCAACGTATCCTCCGTCCTTTGTTTTGGCTAGACCACGAGTTTTGGCTTATACCATTGATCGACACTCAACCTCAAAACAATGACTGACGACATAGACGTTGAGGCCATGCTTGAGGATCATTACGCTCGGGAGGGCTACTCGAAGTCCAATGGTCATCGAAGACGTGGTCGTTCACGTTCCAGGGATCGTAGCAGAAGA ]
[+] EMBL CD135166 [ TGGCTTATACCATTGATCGACACTCAACCTCAAAACAATGACTGACGACATAGACGTTGAGGCCATGCTTGAGGATCATTACGCTCGGGAGGGCTACTCGAAGTCCAATGGTCATCGAAGACGTGGTCGTTCACGTTCCAGGGATCGTAGCAGAAGACACAAGTCGCGCAGCAGGAGCAAGGAACGTCGACGGGATAAGAATCATGAATCCGACCGAGGACGACGTGAACGCCGCCATAGTTCGCGTGACCGGGATCGA ]
[+] EMBL CD061394 [ AGGAACGTCGACGGGAT AGAATCATGAATCCGACCGAGGACGACGTGAACGCCGCCATAGTTCGCGTGACCGGGATCGACATANGGTCTANGTAGAAG ]
[-] EMBL CD061430 [ GGAACGTCGACGGGATAAGAATCATGAATCCGACCGAGGACGACGTGAACGCCGCCATAGTTCGCGTGACCGGGATCGACATA GGTCTA GTAGAGATGACCACAGGCCGTCGCGGACCGAAAGACGTCAGAAATCGTATGTTCCTTTGTGTCCTAATTTATTTTAATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11189#0 ---TCGCCGCGTTCATTGTTAACGGAGAAGTCAATTCGGTCCCAACGTATCCTCCGTCCT 57
consensus_11189#2 AGGTCGCCGCGTTCTTTGTTAACGGAGAAGTCAATTCGGTCCCAACGTATCCTCCGTCCT 60
consensus_11189#1 ------------------------------------------------------------
consensus_11189#0 TTGTTTTGGCTAGACCACGAGTTTTGGCTTATACCATTGATCGACACTCAACCTCAAAAC 117
consensus_11189#2 TTGTTTTGGCTAGACCACGAGTTTTGGCTTATACCATTGATCGACACTCAACCTCAAAAC 120
consensus_11189#1 -----------------CGAGTTTTGGCTTATACCATTGATCGACACTCAACCTCAAAAC 43
*******************************************
consensus_11189#0 AATGACTGACGACATAGACGTTGAGGCCATGCTTGAGGATCATTACGCTCGGGAGGATAC 177
consensus_11189#2 AATGACTGACGACATAGACGTTGAGGCCATGCTTGAGGATCATTACGCTCGGGAGG---- 176
consensus_11189#1 AATGACTGACGACATAGACGTTGAGGCCATGCTTGAGGATCATTACGCTCGGGAGGATAC 103
********************************************************
consensus_11189#0 TCTGGGTCTACGATCCTCGTTGACGTCGTTGTGGACGTCTGGCCCTTTCCCACCCCAGCT 237
consensus_11189#2 ------------------------------------------------------------
consensus_11189#1 TCTGGGTCTACGATCCTCGTTGACGTCGTTGTGGACGTCTGGCCCTTTCCCACCCCAGCT 163
consensus_11189#0 GTAGTTATCAATAGATTATTTCGGGCTACTCGAAGTCCAATGGTCATCGAAGACGTGGTC 297
consensus_11189#2 ------------------------GCTACTCGAAGTCCAATGGTCATCGAAGACGTGGTC 212
consensus_11189#1 GTAGTTATCAATAGATTATTTCGGGCTACTCGAAGTCCAATGGTCATCGAAGACGTGGTC 223
************************************
consensus_11189#0 GTTCACGTTCCAGGGATCGTAGCAGAAGACACAAGTCGCGCAGCAGGAGCAAGGAACGTC 357
consensus_11189#2 GTTCACGTTCCAGGGATCGTAGCAGAAGACACAAGTCGCGCAGCAGGAGCAAGGAACGTC 272
consensus_11189#1 GTTCACGTTCCAGGGATCGTAGCAGAAGACACAAGTCGCGCAGCAGGAGCAAGGAACGTC 283
************************************************************
consensus_11189#0 GACGGGATAAGAATCATGAATCCGACCGAGGACGACGTGAACGCCGCCATAGTTCGCGTG 417
consensus_11189#2 GACGGGATAAGAATCATGAATCCGACCGAGGACGACGTGAACGCCGCCATAGTTCGCGTG 332
consensus_11189#1 GACGGGATAAGAATCATGAATCCGACCGAGGACGACGTGAACGCCGCCATAGTTCCGTGA 343
*******************************************************
consensus_11189#0 ACCGGGATCGACATAGGTCTAGTAGAGATGACCACAGGCCGTCGCGGACCGAAAGACGTC 477
consensus_11189#2 ACCGGGATCGACATAGGTCTAGTAGAAGTGACCACAGGCCGTCGCGGACCGAAAGACGTC 392
consensus_11189#1 AGTAGAGTCGGCTCAG--CTGGCCCTTGGACTTACCGGCACTCGC---TTAATAGGCGTT 398
* * *** * ** ** * ** *** **** * ** ***
consensus_11189#0 AGAAATCTCCTGAACTTAGCCCAGAAGAGCGAGATGCACGAACTGTGTTCGTCTGGCAGC 537
consensus_11189#2 AGAAATCGTATGTTCCT----TTGTGTCCTAATTTATTTTAATT---------------- 432
consensus_11189#1 CCAATTCAGATTCAACAA---AGCCACGCTGAGAAGAATCGAGTAAGCGCCACTCCCTCG 455
** ** * * * *
consensus_11189#0 TTTCTGCGCGCATTCGACAGCGAGACTTGGAGGACTTCTTCACTTCGGTGGGTAAAATCA 597
consensus_11189#2 ------------------------------------------------------------
consensus_11189#1 TTGCCTCGGC-------------------------------------------------- 465
consensus_11189#0 GAGATGTTCGTTTAATCATGGACAACAAAACCAAAAGGTCGAAAGGCATAGCCTATGTTG 657
consensus_11189#2 ------------------------------------------------------------
consensus_11189#1 ------------------------------------------------------------
consensus_11189#0 AGTTCCGTGAAGTAGAGTCGGCTCAGCTGGCCCTTGGACTTACCGGCACTCGCTTATTAG 717
consensus_11189#2 ------------------------------------------------------------
consensus_11189#1 ------------------------------------------------------------
consensus_11189#0 GCGTTCCAATTCAGATTCAACAAAGCCACGCTGAGAAGAATCGAGTAAGCGCCACTCCCT 777
consensus_11189#2 ------------------------------------------------------------
consensus_11189#1 ------------------------------------------------------------
consensus_11189#0 CGTTGCCTCGGCCGTCACAACAGAACAGGGGGCCGATGAAATTATACATAGGTTCTTTAC 837
consensus_11189#2 ------------------------------------------------------------
consensus_11189#1 ------------------------------------------------------------
consensus_11189#0 ATTACAACATCACAGAAGAAATGTTAAAAGGTATATTTGAGCCCTTTGGAAAGATAGAGG 897
consensus_11189#2 ------------------------------------------------------------
consensus_11189#1 ------------------------------------------------------------
consensus_11189#0 ACATAAAATTAATCAAGGACCCTACTACTAACCGTTCGCAAGGCTATGGCTTCGTAACGT 957
consensus_11189#2 ------------------------------------------------------------
consensus_11189#1 ------------------------------------------------------------
consensus_11189#0 ACGTCAACAGTGATGACGCTAAAAAGGCACTGGATCAATTAAACGGGTTTGAGTTGGCTG 1017
consensus_11189#2 ------------------------------------------------------------
consensus_11189#1 ------------------------------------------------------------
consensus_11189#0 GCCGACCGATGAAAGTGAATCATGTAACCGAACGCAGTGAGTATGCTTGTCTAAGCGCCC 1077
consensus_11189#2 ------------------------------------------------------------
consensus_11189#1 ------------------------------------------------------------
consensus_11189#0 TGGACAACGATGAAGCTGACCGCTCAGGCGTTGATCTAGGCACCACTGGGAGATTAGCTT 1137
consensus_11189#2 ------------------------------------------------------------
consensus_11189#1 ------------------------------------------------------------
consensus_11189#0 TAATGGCGAAACTCGCTGAAGGCACTGGCTTAGAAATTCCCAAGGCTGCCCTTGCTCAAT 1197
consensus_11189#2 ------------------------------------------------------------
consensus_11189#1 ------------------------------------------------------------
consensus_11189#0 TGCATATCGGGCAAAACAATCCGATACTAGGTTCAGCTGGAAGTGTTAGTTCATCATCCG 1257
consensus_11189#2 ------------------------------------------------------------
consensus_11189#1 ------------------------------------------------------------
consensus_11189#0 CAATTGCTCCTCCCGTGTGCACGCAATGTTTCATGCTATCCAATATGTTTGACCCACATG 1317
consensus_11189#2 ------------------------------------------------------------
consensus_11189#1 ------------------------------------------------------------
consensus_11189#0 TTGCTACTCATTCGGTTTTCGAAGAAATACGTGACGATGTTATTGAGGAATGTACTAAGG 1377
consensus_11189#2 ------------------------------------------------------------
consensus_11189#1 ------------------------------------------------------------
consensus_11189#0 CCGGCGGATGTCTCCACATTTTTGTTGATCGCACCAGTGCCCAAGGAAATGTTTACGTCA 1437
consensus_11189#2 ------------------------------------------------------------
consensus_11189#1 ------------------------------------------------------------
consensus_11189#0 AATGTCCTAGTATAGCAGTCGCAACTCAATGCGTAAACATGTTACACGGTCGGTATTTCT 1497
consensus_11189#2 ------------------------------------------------------------
consensus_11189#1 ------------------------------------------------------------
consensus_11189#0 CCGGACGGTTGATTACTGCAGCATATGTTCCTTTAATAAATTATCACCAACTCTTCCCAG 1557
consensus_11189#2 ------------------------------------------------------------
consensus_11189#1 ------------------------------------------------------------
consensus_11189#0 ATTCCGTAACTGCAAAAACACTATTGCATCCTTCAAGTTAAAACTATTGTAAATAACCCA 1617
consensus_11189#2 ------------------------------------------------------------
consensus_11189#1 ------------------------------------------------------------
consensus_11189#0 AATGTTTATTGACCACTGCATTTGTCAATATATTATCATTAATAAAAAAAAAAAAAAAAA 1677
consensus_11189#2 ------------------------------------------------------------
consensus_11189#1 ------------------------------------------------------------
consensus_11189#0 AAAAAAAA 1685
consensus_11189#2 --------
consensus_11189#1 --------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||