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Schistosoma mansoni
cluster # 11199 cluster # 11199       Sequences # 39       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11199#0 length = 1037 sequences # 37  
consensus_11199#1 length = 299 sequences # 1  
consensus_11199#2 length = 167 sequences # 1  

consensusID : consensus_11199#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 37
consensus length = 1037
fasta sequence
                              [GATAATACAAAAG-TTTCTGCTTGAAAATGCATGAGTCAGTAACTGCTAACATTGAAAATGTCAAGAAAGTGGCACATCATATACAAAAATTAACAAGTATCGTACCAGAAATCGGAATAATTTGTGGAAGTGGTCTGGGAAAGTTGGCTGATGGAGTGAAAGACAAAATCACAATCCCATACACAAAGATTCCCAACTTCCCTCAAACGTCTGTTGTTGGACACTCTGGAAACCTGATATTTGGAACTCTGAGTGGCCGAAAAGTAGTTGTGATGCAAGGACGGTTTCACATGTACGAGGGATATAGCAATGACACGGTCGCTCTCCCCATACGCGTGATGAAGTTATTGGGAGTCAAAATTCTTATGGTTAGTAATGCTGC-TGGTGGTCTCAACAGAAGTC-TCAAACTCGGTGACTTCGTGATCTTGAAAGACCACATTTACCTTCCTGGACTAGGATTAAATAATATTTTGGTCGGACCGAATCAGGAGGAATTTGGTACTCG-ATTCCCAGCACTTTCGAATGCCTATGACAGAGACCTACGAAAACTAGCTGTGCAAGTAGCTGAAGAAAACGGC-TTTGGGAATTTGGTTCACC-A-GGGTGTTTACGTTATGAATGGTGGTCCTTGTTACGAAACA-CCTGCTGAGTGCACGATGCTGCTTAACATGGGTTGTGATGTAGTCGGTATGAGTACGATTCCGGAAGTTGTAATTGCCCGGCACTGTGGAATTCAAGTGTTCGCTGTTTCACTAGTTACAAATATAAGTGTGCTGGATGTCGAAAGCG-ATTTGAAGCCGAACCATGAAGAAGTCTTGGCCACA-GGTGCTCAACGTGCTGAATTGATGCAATCATGGTTTGAG-AAGATAATTGAAAAACTGCCCAAAGATTGAATTGGATGTCACACTTAGTGTTTTGTGCAATGAATCAAGCTTTGTGAACAATTTTCTCTCTTTGTGTACTTGCTGAAATGAATATTTTAACTTATAAAGTTTTCTGTCTAGACAACGACTTTGTTTTGATTGTCTTTAGTAAATTTT]

[+] EMBL BF936761             [GATAATACAAAAG TTTCTGCTTGAAAATGCATGAGTCAGTAACTGCTAACATTGAAAATGTCAAGAAAGTGGCACATCATATACAAAAATTAACAAGTATCGTACCAGAAATCGGAATAATTTGTGGAAGTGGTCTGGGAAAGTTGGCTGATGGAGTGAAAGACAAAATCACAATCCCATACACAAAGATTCCCAACTTCCCTCAAACGTCTGTTGTTGGACACTCTGGAAACCTGATATTTGGAACTCTGAGTGGCCGAAAAGTAGTTGTGATGCAAGGACGGTTTCACATGTACGAGGGATATAGCAATGACACGGTCGCTCTCCCCATACGCGTGATGAAGTTATTGGGAGTCAAAATTCTTATGGTTAGTAATGCTGC TGGTGGTCTCAACAGAAGTC TCAAACTCGGTGACTTCGTGATCTTGAAAGACCACATTTACCTTCCTGGACTAGGATTAAATAATATTTTGGTCGGACCGAATCAGGAAGAAATTTGTACTCG ATTCCCAGCACTTTCGAATGCCTATGACAGAGACCTACGAAAACTAGCTGTGCCAGTAGCTGAAGAAAACGGCTTTTGGAAATTTGGTTCACC A  GGTGTTTACGTTATGA                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AF321922             [ ATAATACAAAAGTTTTCTGCTTGAAAATGCATGAGTCAGTAACTGCTAACATTGAAAATGTCAAGAAAGTGGCACATCATATACAAAAATTAACAAGTATCGTACCAGAAATCGGAATAATTTGTGGAAGTGGTCTGGGAAAGTTGGCTGATGGAGTGAAAGACAAAATCACAATCCCATACACAAAGATTCCCAACTTCCCTCAAACGTCTGTTGTTGGACACTCTGGAAACCTGATATTTGGAACTCTGAGTGGCCGAAAAGTAGTTGTGATGCAAGGACGGTTTCACATGTACGAGGGATATAGCAATGACACGGTCGCTCTCCCCATACGCGTGATGAAGTTATTGGGAGTCAAAATTCTTATGGTTAGTAATGCTGC TGGTGGTCTCAACAGAAGTC TCAAACTCGGTGACTTCGTGATCTTGAAAGACCACATTTACCTTCCTGGACTAGGATTAAATAATATTTTGGTCGGACCGAATCAGGAGGCATTTGGTACTCG ATTCCCAGCACTTTCGAATGCCTATGACAGAGACCTACGAAAACTAGCTGTGCAAGTAGCTGAAGAAAACGGC TTTGGGAATTTGGTTCACC A GGGTGTTTACGTTATGAATGGTGGTCCTTGTTACGAAACA CCTGCTGAGTGCACGATGCTGCTTAACATGGGTTGTGATGTAGTCGGTATGAGTACGATTCCGGAAGTTGTAATTGCCCGGCACTGTGGAATTCAAGTGTTCGCTGTTTCACTAGTTACAAATATAAGTGTGCTGGATGTCGAAAGCG ATTTGAAGCCGAACCATGAAGAAGTCTTGGCCACA GGTGCTCAACGTGCTGAATTGATGCAATCATGGTTTGAG AAGATAATTGAAAAACTGCCCAAAGATTGAATTGGATGTCACACTTAGTGTTTTGTGCAATGAATCAAGCTTTGTGAACAATTTTCTCTCTTTGTGTACTTGCTGAAATGAATATTTTAACTTATAAAGTTTTCTGTCTAGACAACGACTTTGTTTTGATTGTCTTTAGTAAATTT ]
[+] EMBL SMT14557             [ ATAATACAAAAG TTTCTGCTTGAAAATGCATGAGTCAGTANCTNCTAACATTGAAAATGTCAAGAAAGTGGCACATCATATACAAAAATTAACAAGTATCGTACCAGAAATCGGAATAATTTGTGGAAGTGGTCTGGGAAAGTTGGCTGATGGAGTGAAAGACAAAATCACAATCCCATACACAAAGATTCCCAACTTCCCTCAAACGTCTGTTGTTGGACACTCTGGAAACCTGATATTTGGAACTCTGAGTGGCCGAAAAGTAGTTGTGATGCAAGGNCGGTTTCACATGTACGAGGGATATAGCAATGACACGGTCGCTCTCCCCATACGCGTGATGAAGTTATTGGGAGTCAAAATTCTTATGGTTAGTAATGCTGCTTGGTGGTCTCAACAGAAGTCTTCAAACTCGGTGACTTCGTGATCTTTGAAGACCACATTTACCTT CNGGGCTAGGGTTAAATAATNTTTNGGTCGGNCC NATCAGGGGGCATTTNGTACTCG ATTCCCA CACTTTCGGATGCC ATGCCAGgnc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AI018923             [                                    ggtcgtgncGCTAACATTG AAATGTC AG AAGTGGCACATCATATAC AAAATTAAC AGTATCGTACCAGANATCGGAATAATTTGTGGAAGTGGTCTGGGAAAGTTGGCTGATGGAGTGAAGGNCAAAATCACATTCCCATACACAAGGNTTCCCAACTTCCCTCAAACGTCTGTTGTTGGACACTCTGGAAACCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD139103             [                                                   atgcgtAATGTTAGGAAAGTGGCAGACCATATCTTTAAATCAGTACGTTTCAAACCAGAAATCGGGATCATTTGTGGAAGTGGTCTGGGAAAGTTGGCTGATGGAGTGAAAGACAAAATCACAATCCCATACACAAAGATTCCCAACTTCCCTCAAACGTCTGTTGTTGGACACTCTGGAAACCTGATATTTGGAACTCTGAGTGGCCGAAAAGTAGTTGTGATGCAAGGACGGTTTCACATGTACGAGGGATATAGCAATGACACGGTCGCTCTCCCCATACGCGTGATGAAGTTATTGGGAGTCAAAATTCTTATGGTTAGTAATGCTGC TGGTGGTCTCAACAGAAGTC TCAAACTCGGTGACTTCGTGATCTTGAAAGACCACATTTACCTTCCTGGACTAGGATTAAATAATATTTTGGTCGGACCGAATCAGGAGGAATATGGTACTCG ATTCCCAGCACTTTCGAATGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AI018958             [                                                                                                           AGAAATCGGAATAATTTCTGGAAGTGGTCTGGGAAAGTTGGCTGATGGAGTGAAAGACAAAATCACAATCCCATACACAAAGATTCCCAACTTCCCTCAAACGTCTGTTGTTGGACACTCTGGAAACCTGATATTTGGAACTCTGAGTGGCCGAAAAGTAGTTGTNATGCAAGGCCGGTTTCACATGTACGAGGGATATAGCAATGTCACGGTCGCTCTCCCCATACGCGTTATGAAGTTATTGGGAGTCAAAATTCTTATGGTTAGTAATGCTGC TGGTGGTCTCAACAGAAGTC TCAAACTCGGTGACTTCGTGATCTTGAAAGc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AI018960             [                                                                                                            GAAATCGGAATAATTTGTNGAAGTNGTCTGGGAAAGTTGGCTGATGGAGTNAAAGACAAAATCACAATCCCATACACAAAGATTCCCAACTTCCCTCAAACGTCTGTTGTTGGACACTCTGGAAACCTGATATTTGGAACTCTGAGTNGCCGAAAAGTAGTTGTNATGCAAGGACGGTTTCACATGTACGAGGGATATAGCAATGACACGGTCGCTCTCCCCATACGCGTTATGAAGTTATTGGGAGTCAAAATTCTTATGGTTAGTAATGCTGC TGGTGGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL SMT14637             [                                                                                                             ggaagGGAATAATTTTTGG AGTGGTCTGGGAAAGTTGGCTGATGGAGTGAAAGACAAAATCACAATCCCATACAC AAGA TCCCAACTTCCCTCAAACGTCTGTTGTTGGACACTCTGGAAACCTGATATTTGGAACTCTGAGTGGCCGAAAAGTAGTTGTGATGCAAGGACGGTTTCACATGTACGAGGGATATAGCAATGACACGGTCGCTCTCCCCATACGCGTGATGAAGTTATTGGGAGTCAAAATTCTTATGGTTAGTAATGCTGC TGGTGGTCTCAACAGAAGTC TCAAACTCGGTGACTTCGTGATCTTGAAAGACCACATTTACCTTCCTGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AI974960             [                                                                                                                         TTTGTGGAAGTGGTCTGGGAAAGTTGGCTGATGGAGTGAAAGACAAAATCACAATCCCATACACAAAGATTCCCAACTTCCCTCAAACGTCTGTTGTTGGACACTCTGGAAACCTGATATTTGGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD202725             [                                                                                                                                                               AAAGACAAAATCACAATCCCATACACAAAGATTCCCAACTTCCCTCAAACGTCTGTTGTTGGACACTCTGGAAACCTGATATTTGGAACTCTGAGTGGCCGAAAAGTAGTTGTGATGCAAGGACGGTTTCACATGTACGAGGGATATAGCAATGACACGGTCGCTCTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD133694             [                                                                                                                                                                                             ATTCCCAACTTCCCTCAAACGTCTGTTGTTGGACACTCTGGAAACCTGATATTTGGAACTCTGAGTGGCCGAAAAGTAGTTGTGATGCAAGGACGGTTTCACATGTACGAGGGATATAGCAATGACACGGTCGCTCTCCCCATACGCGTGATGAAGTTATTGGGAGTCAAAATTCTTATGGATAGTAATGCTGC TGGTGGTCTCAACAGAAGTC TCAAACTCGGTGACTTCGTGATCTTGAAAGACCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD190666             [                                                                                                                                                                                                                                                                     AAAGTAGTTGTGATGCAAGGACGGTTTCACATGTACGAGGGATATAGCAATGACACGGTCGCTCTCCCCATACGCGTGATGAAGTTATTGGGAGTCAAATTTCTTATGGTTAGTAATGCTGC TGGTGGTCTCAACAGAAGTC TCAAACTCGGTGACTTCGTGATCTTGAAAGACCACATTTACCTTCCTGGACTAGGATTAAATAATATTTTGGTCGGACCGAATCAGGAGGAATTTGGTACTCG ATTCCCAGCACTTTCGAATGCCTATGACAGAGACCTACGAAAACTAGCTGTGCAAGTAGCTGAAGAAAACGGC TTTGGGAATTTGGTTCACC A GGGTGTTTACGTTATGAATGGTGGTCCTTGTTACGAAACA CCTGCTGAGTGCACGATGCTGCTTAACATGGGTTGTGATGTAGTCGGTATGAGTACGATTCCGGAAGTTGTAATTGCCCGGCACTGTGGAATTCAAGTGTTCGCTGTTTCACTAGTTACAAATATAAGTGTGCTGGATGTCGAAAGCG ATTTGAAGC                                                                                                                                                                                                                                                    ]
[+] EMBL CD191722             [                                                                                                                                                                                                                                                                                                                ATAGCAATGACACGGTCGCTCTCCCCATACGCGTGATGAAGTTATTGGGAGTCAAAATTCTTATGGTTAGTAATGCTGC TGGTGGTCTCAACAGAAGTC TCAAACTCGGTGACTTCGTGATCTTGAAAGACCACATTTACCTTCCTGGACTAGGATTAAATAATATTTTGGTCGGACCGAATCAGGAGGAATTTGGTACTCG ATTCCCAGCACTTTCGAATGCCTATGACAGAGACCTACGAAAACTAGCTGTGCAAGTAGCTGAAGAAAACGGC TTTGGGAATTTGGTTCACC A GGGTGTTTACGTTATGAATGGTGGTCCTTGTTACGAAACA CCTGCTGAGTGCACGATGCTGCTTAACATGGGTTGTGATGTAGTCGGTATGAGTACGATTCCGGAAGTTGTAATTGCCCGGCACTGTGGAATTCAAGTGTTCGCTGTTTCACTAGGTACAAATATAAGTGTGCTGGATGTCGAAAGCG ATTTGAAGCCGAACCATGAAGAAGTCTTGGCC                                                                                                                                                                                                                             ]
[-] EMBL CD141056             [                                                                                                                                                                                                                                                                                                                                                   ATGAAGTTATTGGGAGTCAGAATTCTTATGGTTAGTAATGCTGC TGGTGGTCTCAACAGAAGTC TCAAACTCGGTGACTTCGTGATCTTGAAAGACCACATTTACCTTCCTGGACTAGGATTAAATAATATTTTGGTCGGACCGAATCAGGAGGAATTTGGTACTCG ATTTACAGCACTTTCGAATGCCTATGATAGAGACCTACGAAAACTAGCTGTGCAAGTAGCTGAAGAAAGCGAC TTTGAGAATATGGTTCACC A GGGTGTTTTCGTTATGAATGGTGATCCTTGTTACAAAGCATTCTGCTGAGTTCGCGATGCTGCTTAACATGGGAGGTGATGTAGTCGGTATGAG                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD120080             [                                                                                                                                                                                                                                                                                                                                                      AAGTTATTGGGAGTCAAAATTCTTATGGTCAGTAATGCTGC TGGTGGTCTCAACAGAAGTC TCAAACTCGGTGACTTCGTGATCTTGAAAGACCACATTTACCTTCCTGGACTAGGATTAAATAATATTTTGGTCGGACCGAATCAGGAGGAATTTGGTACTCG ATTCCCAGCACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AI976065             [                                                                                                                                                                                                                                                                                                                                                                                                                AGTC TCAAACTCGGTGACTTCGTGATCTTGAAAGACCACATTTACCTTCCTGGACTAGGATTAAATAATATTTTGGTCGGACCGAATCAGGAGGAATTTGGTACTCG ATTCCCAGCACTTTCGAATGCCTATGACAGAGACCTACGAAAACTAGCTGTGCAAGTAGCTGAAGAAAACGGC TTTGGGAATTTGGTTCACC A GGGTGTTTACGTTATGAATGGTGGTCCTTGTTACGAAACA CCTGCTGAGTGCACGATGCTGCTTAACATGGGTTGTGATGTAGTCGGTATGAGTACGATTCCGGAAGTTGTAATTGCCCGGCACTGTGGAATTCAAGTGTTCGCTGTTTCACTAGTTACAAATATAAGTGTGCTGGATGTCGAAAGCG ATTTGAAGCCGAACCATGAAGAAGTCTTGGCCACA GGTGCTCAACGTGCTGAATTGATGCAATCATGGTTTGAG AAGATAATTGAAAAACTGCCCAAAGATTGAATTGGATGTCACACTTAGTGTTTTGTGCAATGAATCAAGCTTTGTGAACAATTNTC                                                                                           ]
[+] EMBL CD139202             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AATATTTTGGTCGGACCGAATCAGGAGGAATTTGGTACTCG ATTCCCAGCACTTTCGAATGCCTATGACAGAGACCTACGAAAACTAGCTGTGCAAGTAGCTGAAGAAAACGGC TTTGGGAATTTGGTTCACC A GGGTGTTTACGTTATGAATGGTGGTCCTTGTTACGAAACA CCTGCTGAGTGCACGATGCTGCTTAACATGGGTTGTGATGTAGTCGGTATGAGTACGATTCCGGAAGTTGTAATTGCCCGGCACTGTGGAATTCAAGTGTTCGCTGTTTCACTAGTTACAAATATAAGTGTGCTGGATGTCGAAAGCG ATTTGAAGCCGAACCATGAAGAAGTCTTGGCCACAGGGTGCTC ACGTGCTGAATTGATGNCATCATGGTTTGAGAAAGAT ATTGA                                                                                                                                                                      ]
[-] EMBL AI018903             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AGGAGGAATTTGGTACTCG ATTCCCAGNACTTTCGAATGCCTATGACAGAGACCTACGAAAACTAGCTGTGCAAGTAGCTGAANAAAACGGC TTTGGGAATTTGGTTCACC A GGGTGTTTACGTTATGAATGGTGGTCCNTGTTACGAAACA CCTGCTGAGTGCACGATGCTGCTTAACATGGGTTGTGATGTAGTCGGTATGAGTACGATTCCGGAAGTTGTAATTGCCCGGCACTGTGGAATTCAAGTGTTCGCTGTTTCACTAGTTACAAATATAAGTGTGCTGGATGTCGAAAGCG ATTTGAAGCCGAACCATGAAGAAGTCTTGGCCACA GGTGCTCAACGTGCTGAATTGATGCAATCATGGTTTGAG AAGATAATTGAAAAACTGCCCAAAGATTGAATTGGATGTCACACTTAGTGTTTTGTGCAATGAATCAAGCTTTGTGAACAA TTTCTCTCTTTGTGTACTTGCTGAAATGAATATTTTAACTTATAAAGTTTTC                                           ]
[-] EMBL SMT14600             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AGGAGGAATTTGGTACTCG ATTCCCAGNACTTTCGAATGCCTATGACAGAGACCTACGAAAACTAGCTGTGCAAGTAGCTGAANAAAACGGC TTTGGGAATTTGGTTCACC A GGGTGTTTACGTTATGAATGGTGGTCCNTGTTACGAAACA CCTGCTGAGTGCACGATGCTGCTTAACATGGGTTGTGATGTAGTCGGTATGAGTACGATTCCGGAAGTTGTAATTGCCCGGCACTGTGGAATTCAAGTGTTCGCTGTTTCACTAGTTACAAATATAAGTGTGCTGGATGTCGAAAGCG ATTTGAAGCCGAACCATGAAGAAGTCTTGGCCACA GGTGCTCAACGTGCTGAATTGATGCAATCATGGTTTGAG AAGATAATTGAAAAACTGCCCAAAGATTGAATTGGATGTCACACTTAGTGTTTTGTGCAATGAATCAAGCTTTGTGAACAA TTTCTCTCTTTGTGTACTTGCTGAAATGAATATTTTAACTTATAAAGTTTTC                                           ]
[-] EMBL CD064089             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    gtacccGGAGGAATTTGGTACTCG ATTCCCAGCACTTTCGAATGCCTATGACAGAGACCTACGAAAACTAGCTGTGCAAGTAGCTGAAGAAAACGGC TTTGGGAATTTGGTTCACC A GGGTGTTTACGTTATGAATGGTGGTCCTTGTTACGAAACA CCTGCTGAGTGCACGATGCTGCTTAACATGGGTTGTGATGTAGTCGGTATGAGTACGATTCCGGAAGTTGTAATTGCCCGGCACTGTGGAATTCAAGTGTTCGCTGTTTCACTAGTTACGAATATGAGTGTGCTGGATGTCGGAAGCG ATTTGAAGCCGAACCATGAAGAAGTCTTGGCCACA GGTGCTCAACGTGCTGAATTGATGCAATCATGGTTTGAG AAGATAATTGAAAAACTGCCCAAAGATTGAATTGGATGTCACACTTAGTGTTTTGTGCAATGAATCAAGCTTTGTGAACAATTTTCTCTCTTTGTGTAC                                                                              ]
[+] EMBL CD064341             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TTTGGTACTCG ATTCCCAGCACTTTCGAATGCCTATGACAGAGACCTACGAAAACTAGCTGTGCAAGTAGCTGAAGAAAACGGC TTTGGGAATTTGGTTCACC A GGGTGTTTACGTTATGAATGGT                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD165622             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTGGTACTCG ATTCCCAGCACTTTCGAATGCCTATGACAGAGACCTACGAAAACTAGCTGTGCAAGTAGCTGAAGAAAACGGC TTTGGGAATTTGGTTCACC A GGGTGTTTACGTTATGAATGGTGGTCCTTGTTACGAAACA CCTGCTGAGTGCACGATGCTGCTTAACATGGGTTGTGATGTAGTCG                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD165710             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTGGTACTCG ATTCCCAGCACTTTCGAATGCCTATGACAGAGACCTACGAAAGCTAGCTGTGCAAGTAGCTGAAGAAAACGGC TTTGGGAATTTGGTTCACC A GGGTGTTTACGTTATGAATGGTGGTCCTTGTTACGAAACA CCTGCTGAGTGCACGATGCTGCTTAACATGGGTTGTGATGTAGTCG                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD130845             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGGTACTCG ATTCCCAGCACTTTCGAATGCCTATGACAGAGACCTACGAAAACTAGCTGTGCAAGTAGCTGAAGAAAACGGC TTTGGGAATTTGGTTCACC A GGGTGTTTACGTTATGAATGGTGGTCCTTGTTACGAAACA CCTGCTGAGTGCACGATGCTGCTTAACATGGGTTGTGATGTAGTCGG                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD139125             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGGTACTCG GTT CCAGCACTTTCGAATGCTTATGACAGAGACCTACGAAAACTAGCTGTGCAAGTAGCTGAAGAAAACGGC TTTGGGAATTTGGTTCACC A GGGTGTTTACGTTATGAATGGTGGTCCTTGTTACGAAACA CCTGCTGAGTGCACGATGCTGCTTAACATGGGTTGTGATGTAGTCGGTATGAGTACGATTCCGGAAGTTGTAATCGCCCGGCACTGTGGAATTCAAGTGTTCGCTGTTTCACTAGTTACAAATATAAGTGTGCTGGATGTCGAAAGCG ATTTGAAGCCGAACCATGAAGAAGCCTTGGCCACA GGTGCTCAACGTGCTGAATTGATGCAATCATGGTTTGAG AAGATAATTGAAAAACTGCCCAAAGATTGAACTGGATGTCACACTTAGTGTTTTGTGCAATGAATCAAGCTTTGTGAACAATTTTCT                                                                                          ]
[+] EMBL CD126784             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGGTACTCGAATTCCCAGCACTTTCGAATGCCTATGACAGAGACCTACGAAAACTAGCTGTGCAAGTAGCTGAAGAAAACGGC TTTGGGAATTTGGTTCACC A GGG                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD064102             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GGTACTCG ATTCCCAGCACTTTCGAATGCCTATGACAGAGACCTACGAAAACTAGCTGTGCAAGTAGCTGAAGAAAACGGC TTTGGGAATTTGGTTCACC A GGGTGTTTACGTTATGAAT                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD064073             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GGTACTCG ATTCCCAGCACTTTCGAATGCCTATGACAGAGACCTACGAAAACTAGCTGTGCAAGTAGCTG AG AAACGGC TTTGGG ATTT GTTCACC A GGGTGTTTACGTTAT                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD166580             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GGTACTCG ATTCCCAGCACTTTCGAATGCCTATGACAGAGACCTACGAAAACTAGCTGTGCAAGTAGCTGAAGAAAACGGC TTTGGG ATTT GTTCACC A GGGTGTTTACGTT                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD064180             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GGTACTCG ATTCCCAGCACTTTCGAATGCCTATGACAGAGACCTACGAAAACTAGCTGTGCAAGTAGCTGAAGAAAACGGC TTTGGG ATTTGGTTCACCGA GGGTGTTTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD064373             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GGTACTCG ATTCCCAGCACTTTCGAATGCCTATGACAGAGACCTACGAAAACTAGCTGTGCAAGTAGCTGAAGAAAACGGC TTTGGGAATTTGGT  ACC A GGGTGcta                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD064262             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GGTACTCG ATTCCCAGCACTTTCGAATGCCTATGACAGAGACCTACGAAAACTAGCTGTGCAAGTAGCTGAAGAAAACGGC TTTGGGAATT  GTTCACC ATGGGTGTTTACGTTATGAATGTTCGTCga                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD134777             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGCTGTGCAAGTAGCTGAAGAAAACGGC TTTGGGAATTTGGTTCACC A GGGTGTTTACGTTATGAATGGTGGTCCTTGTTACGAAACA CCTGCTGAGTGCACGATGCTGCTTAACATGGGTTGTGATGTAGTCGGTATGAGTACGATTCCGGAAGTTGTAATTGCCCGGCACTGTGGAATTCAAGTGTTCGCTGTTTCACTAGTTACAAATATAAGTGTGCTGGATGTCGAAAGCG ATTTGAAGCCGAACCATGAAGAAGTCTTGGCC                                                                                                                                                                                                                             ]
[-] EMBL AI018928             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GATGCTGCTTAACATGGGTTGTGATGTAGTCGGTATGAGTACGATTCCGGAAGTTGTAATTGCCCGGCACTGTGGAATTCAAGTGTTCGCTGTTTCACTAGTTACAAATATAAGTGTGCTGGATGTCGAAAGCG ATTTGAAGCCGAACCATGAAGAAGTCTTGGCCACA GGTGCTCAACGTGCTGAATTGATGCAATCATGGTTTGAG AAGATAATTGAAAAACTGCCCAAAGATTGAATTGGATGTCACACTTAGTG TTTGTGCAATGAATCAAGCTTTGTGAACAATTTTCTCTCTTTGTGTACTTGCTGAAATGAATATTTTAACTTATAAAGTTTTC                                           ]
[-] EMBL SMT14556             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TCGGTATGAGTACGATTCCGGAAGTTGTAATTGCCCGGCACTGTGGAATTCAAGTGTTCGCTG TTCACTAGTTACAAATATAAGTGTGCTGGATGTCGAAAGCG ATTTGAAGCCGAACCATGAAGAAGTCTTGGCCACA GGTGCTCAACGTGCTGAATTGATGCAATCATGGTTTGAG AAGATAATTGAAAAACTGCCCAAAGATTGAATTGGATGTCACACTTAGTGTTTTGTGCAATGAATCAAGCTTTGTGAACAATTTTCTCTCTTTGTGTACTTGCTGAAATGAATATTTTAACTTATAAAGTTTTCTGTCTAGACAACGACTTTGTTTTGATTGTCTTTAGTAAATTTT]
[-] EMBL SMT14636             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TGT GAATTCAAGTGTTCGCTGTTTCACTAGTTACAAATATAAGTGTGCTGGATGTCGAAAGCG ATTTGAAGCCGAACCATGAAGAAGTCTTGGCCACA GGTGCTCAACGTGCTGAATTGATGCAATCATGGTTTGAG AAGATAATTGAAAAACTGCCCAAAGATTGAATTGGATGTCACACTTAGTGTTTTGTGCAATGAATCAAGCTTTGTGAAGAA TTTCTCTCTTTGTGTACTTGCTGAAATGAATATTTTAACTTATAAAGTTTTC                                           ]
[-] EMBL AI018959             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTGCTGGATGTCGAAAGCGAATTTGAAGCCGAACCATGAAGAAGTCTTGGCCACA GGTGCTCAACGTGCTGAATTGATGCAATCATGGTTTGAG AAGATAATTGAAAAACTGCCCAAAGATTGAATTGGATGTCACACTTAGTGTTTTGTGCAATGAATCAAGCTTTGTGAANNATTTTCTCCCTTTGTG                                                                                 ]


>consensus_11199#0 GATAATACAAAAGTTTCTGCTTGAAAATGCATGAGTCAGTAACTGCTAACATTGAAAATG TCAAGAAAGTGGCACATCATATACAAAAATTAACAAGTATCGTACCAGAAATCGGAATAA TTTGTGGAAGTGGTCTGGGAAAGTTGGCTGATGGAGTGAAAGACAAAATCACAATCCCAT ACACAAAGATTCCCAACTTCCCTCAAACGTCTGTTGTTGGACACTCTGGAAACCTGATAT TTGGAACTCTGAGTGGCCGAAAAGTAGTTGTGATGCAAGGACGGTTTCACATGTACGAGG GATATAGCAATGACACGGTCGCTCTCCCCATACGCGTGATGAAGTTATTGGGAGTCAAAA TTCTTATGGTTAGTAATGCTGCTGGTGGTCTCAACAGAAGTCTCAAACTCGGTGACTTCG TGATCTTGAAAGACCACATTTACCTTCCTGGACTAGGATTAAATAATATTTTGGTCGGAC CGAATCAGGAGGAATTTGGTACTCGATTCCCAGCACTTTCGAATGCCTATGACAGAGACC TACGAAAACTAGCTGTGCAAGTAGCTGAAGAAAACGGCTTTGGGAATTTGGTTCACCAGG GTGTTTACGTTATGAATGGTGGTCCTTGTTACGAAACACCTGCTGAGTGCACGATGCTGC TTAACATGGGTTGTGATGTAGTCGGTATGAGTACGATTCCGGAAGTTGTAATTGCCCGGC ACTGTGGAATTCAAGTGTTCGCTGTTTCACTAGTTACAAATATAAGTGTGCTGGATGTCG AAAGCGATTTGAAGCCGAACCATGAAGAAGTCTTGGCCACAGGTGCTCAACGTGCTGAAT TGATGCAATCATGGTTTGAGAAGATAATTGAAAAACTGCCCAAAGATTGAATTGGATGTC ACACTTAGTGTTTTGTGCAATGAATCAAGCTTTGTGAACAATTTTCTCTCTTTGTGTACT TGCTGAAATGAATATTTTAACTTATAAAGTTTTCTGTCTAGACAACGACTTTGTTTTGAT TGTCTTTAGTAAATTTT



consensusID : consensus_11199#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 299
fasta sequence
                              [CCGCCCTAACATGGGTTGTGATGNAGCCGGTATGAGTACGAATCCCGGAAGTTGTAATTGCCCGGCACTGTGGAANTCAAGTGTTCGCTGTTCACCAGTGACAAACAAAAGTGTGCNGGATGNCGAAANCGATTTGAAGCCGAACCATGAAGAANTCAGGGCCAAAGGTGCTCAACGTGCTGAATTGATGCAATCATGGTTTGAGAAGATAATTGAAAAACTGCCCAAAGATTGAATTGGATGTCACACTTAAGTGTNTTTGTGCAATGAATCAAGCTTTGTGAACGATGTCTCCNTTN]

[-] EMBL SMW714               [CCGCCCTAACATGGGTTGTGATGNAGCCGGTATGAGTACGAATCCCGGAAGTTGTAATTGCCCGGCACTGTGGAANTCAAGTGTTCGCTGTTCACCAGTGACAAACAAAAGTGTGCNGGATGNCGAAANCGATTTGAAGCCGAACCATGAAGAANTCAGGGCCAAAGGTGCTCAACGTGCTGAATTGATGCAATCATGGTTTGAGAAGATAATTGAAAAACTGCCCAAAGATTGAATTGGATGTCACACTTAAGTGTNTTTGTGCAATGAATCAAGCTTTGTGAACGATGTCTCCNTTN]


>consensus_11199#1 CCGCCCTAACATGGGTTGTGATGNAGCCGGTATGAGTACGAATCCCGGAAGTTGTAATTG CCCGGCACTGTGGAANTCAAGTGTTCGCTGTTCACCAGTGACAAACAAAAGTGTGCNGGA TGNCGAAANCGATTTGAAGCCGAACCATGAAGAANTCAGGGCCAAAGGTGCTCAACGTGC TGAATTGATGCAATCATGGTTTGAGAAGATAATTGAAAAACTGCCCAAAGATTGAATTGG ATGTCACACTTAAGTGTNTTTGTGCAATGAATCAAGCTTTGTGAACGATGTCTCCNTTN



consensusID : consensus_11199#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 167
fasta sequence
                              [TGAGCGACCATGAGAGTCTGGCACAGGTGCTCACGTGCTGATTGATGCATCATGGTTTGAGAGATATTGAAAACTGCCCAAGATTGATTGGATGTCACACTTAGTGTTTTGTGCAATGAATCAGCTTTGTGAACAATTTTCTCTCTTTGTGTACTTGCTGAAATGAA]

[+] EMBL AA960684             [TGAGCGACCATGAGAGTCTGGCACAGGTGCTCACGTGCTGATTGATGCATCATGGTTTGAGAGATATTGAAAACTGCCCAAGATTGATTGGATGTCACACTTAGTGTTTTGTGCAATGAATCAGCTTTGTGAACAATTTTCTCTCTTTGTGTACTTGCTGAAATGAA]


>consensus_11199#2 TGAGCGACCATGAGAGTCTGGCACAGGTGCTCACGTGCTGATTGATGCATCATGGTTTGA GAGATATTGAAAACTGCCCAAGATTGATTGGATGTCACACTTAGTGTTTTGTGCAATGAA TCAGCTTTGTGAACAATTTTCTCTCTTTGTGTACTTGCTGAAATGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11199#0      GATAATACAAAAGTTTCTGCTTGAAAATGCATGAGTCAGTAACTGCTAACATTGAAAATG 60
consensus_11199#2      ------------------------------------------------------------
consensus_11199#1      ------------------------------------------------------------
                                                                                   

consensus_11199#0      TCAAGAAAGTGGCACATCATATACAAAAATTAACAAGTATCGTACCAGAAATCGGAATAA 120
consensus_11199#2      ------------------------------------------------------------
consensus_11199#1      ------------------------------------------------------------
                                                                                   

consensus_11199#0      TTTGTGGAAGTGGTCTGGGAAAGTTGGCTGATGGAGTGAAAGACAAAATCACAATCCCAT 180
consensus_11199#2      ------------------------------------------------------------
consensus_11199#1      ------------------------------------------------------------
                                                                                   

consensus_11199#0      ACACAAAGATTCCCAACTTCCCTCAAACGTCTGTTGTTGGACACTCTGGAAACCTGATAT 240
consensus_11199#2      ------------------------------------------------------------
consensus_11199#1      ------------------------------------------------------------
                                                                                   

consensus_11199#0      TTGGAACTCTGAGTGGCCGAAAAGTAGTTGTGATGCAAGGACGGTTTCACATGTACGAGG 300
consensus_11199#2      ------------------------------------------------------------
consensus_11199#1      ------------------------------------------------------------
                                                                                   

consensus_11199#0      GATATAGCAATGACACGGTCGCTCTCCCCATACGCGTGATGAAGTTATTGGGAGTCAAAA 360
consensus_11199#2      ------------------------------------------------------------
consensus_11199#1      ------------------------------------------------------------
                                                                                   

consensus_11199#0      TTCTTATGGTTAGTAATGCTGCTGGTGGTCTCAACAGAAGTCTCAAACTCGGTGACTTCG 420
consensus_11199#2      ------------------------------------------------------------
consensus_11199#1      ------------------------------------------------------------
                                                                                   

consensus_11199#0      TGATCTTGAAAGACCACATTTACCTTCCTGGACTAGGATTAAATAATATTTTGGTCGGAC 480
consensus_11199#2      ------------------------------------------------------------
consensus_11199#1      ------------------------------------------------------------
                                                                                   

consensus_11199#0      CGAATCAGGAGGAATTTGGTACTCGATTCCCAGCACTTTCGAATGCCTATGACAGAGACC 540
consensus_11199#2      ------------------------------------------------------------
consensus_11199#1      ------------------------------------------------------------
                                                                                   

consensus_11199#0      TACGAAAACTAGCTGTGCAAGTAGCTGAAGAAAACGGCTTTGGGAATTTGGTTCACCAGG 600
consensus_11199#2      ------------------------------------------------------------
consensus_11199#1      ------------------------------------------------------------
                                                                                   

consensus_11199#0      GTGTTTACGTTATGAATGGTGGTCCTTGTTACGAAACACCTGCTGAGTGCACGATGCTGC 660
consensus_11199#2      ------------------------------------------------------------
consensus_11199#1      -------------------------------------------------------CCGCC 5
                                                                                   

consensus_11199#0      TTAACATGGGTTGTGATGTAGTCGGTATGAGTACGATTCCGGAAGTTGTAATTGCCCGGC 720
consensus_11199#2      ------------------------------------------------------------
consensus_11199#1      CTAACATGGGTTGTGATGNAGCCGGTATGAGTACGAATCCCGGAAGTTGTAATTGCCCGG 65
                                                                                   

consensus_11199#0      ACTGTGGAATTCAAGTGTTCGCTGTTTCACTAGTTACAAATATAAGTGTGCTGGATGTCG 780
consensus_11199#2      ------------------------------------------------------------
consensus_11199#1      CACTGTGGAANTCAAGTGTTCGCTGTTCACCAGTGACAAACAAAAGTGTGCNGGATGNCG 125
                                                                                   

consensus_11199#0      AAAGCGATTTGAAGCCGAACCATGAAGAAGTCTTGGCCACAGGTGCTCAACGTGCTGAAT 840
consensus_11199#2      ---------------TGAGCGACCATGAGAGTCTGGC-ACAGGTGCTCA-CGTGCTGA-T 42
consensus_11199#1      AAANCGATTTGAAGCCGAACCATGAAGAANTCAGGGCCAAAGGTGCTCAACGTGCTGAAT 185
                                       ** * *  * **      *** * ********* ******** *

consensus_11199#0      TGATGCAATCATGGTTTGAGAAGATAATTGAAAAACTGCCCAAAGATTGAATTGGATGTC 900
consensus_11199#2      TGATGCA-TCATGGTTTGAGA-GATATT--GAAAACTGCCCAA-GATTGA-TTGGATGTC 96
consensus_11199#1      TGATGCAATCATGGTTTGAGAAGATAATTGAAAAACTGCCCAAAGATTGAATTGGATGTC 245
                       ******* ************* **** *   ************ ****** *********

consensus_11199#0      ACACTTA-GTGTTTT-GTGCAATGAATCAAGCTTTGTGAACAATTTTCTCTCTTTGTGTA 958
consensus_11199#2      ACACTTA-GTGTTTT-GTGCAATGAATCA-GCTTTGTGAACAATTTTCTCTCTTTGTGTA 153
consensus_11199#1      ACACTTAAGTGTNTTTGTGCAATGAATCAAGCTTTGTGAACGATGTCTCCNTTN------ 299
                       ******* **** ** ************* *********** ** *   *  *       

consensus_11199#0      CTTGCTGAAATGAATATTTTAACTTATAAAGTTTTCTGTCTAGACAACGACTTTGTTTTG 1018
consensus_11199#2      CTTGCTGAAATGAA---------------------------------------------- 167
consensus_11199#1      ------------------------------------------------------------
                                                                                   

consensus_11199#0      ATTGTCTTTAGTAAATTTT 1037
consensus_11199#2      -------------------
consensus_11199#1      -------------------
                                          




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)