These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11215#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 36 consensus length = 1108 fasta sequence [GATTGACCAGCAATACGTATGATAGTATATTGATGCTCACCGAGTAAAAATGTAGGCATACATTCGGCCGATATAATATATCGACTACAACTACGATCCGTTACAAGTCTTCCTGAAGTGAAATTATAAAAATTATGAGTACCCTTATACTTTTCAAGTAAACGATTAACTTGGGTAATTTGTTCAACTGTCAAACGATAAGTCCAACAAGTGGAATCGTTTAATGATGAAGTAGCAGGTGATAAGGCAAATGTAGGTAACAGATAATCATATATTCGATGTGTACACGAACTGTATGAAGAAAATCCACGAGTTACACGAATAATATCAAGAACACGAATATTTTCGGGCAAAGAGTTGTTCAATTTACTTAATAAATCTGTGTCTTCTTTTAATTGCATAGAACAAACTTGTCCAAGGGCGGAAACGGATTTGTCAGTTTTAGATGCACGTTGAAAATGAACTCTTTTATGTTCTTCACTTGTCAGATTATCGAGTTGACCACAAGTAAAGAGAGCTTTAGACAGTTCTCCTTCAATAGTTGGAAAAACAGGGCATCTTTGCATGCCATAATAACCCCAACCTGAATACATCAACAAAATGGCATTATTCCTACGTTTAGGTCTGGTGGAAGCATT-GGAG-AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT--GGTTGTTGTATATT-GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC-TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG-AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC-GGTTTAAAGTGC-TTCTTTGG-TAA-TTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT-GTTTGAAAGTTCACTTGTGTGTCCAACATCCAGCCGGCCCAATCACTAGGAATT] [+] EMBL CD069238 [GATTGACCAGCAATACGTATGATAGTATATTGATGCTCACCGAGTAAAAATGTAGGCATACATTCGGCCGATATAATATATCGACTACAACTACGATCCGTTACAAGTCTTCCTGAAGTGAAATTATAAAAATTATGAGTACCCTTATACTTTTCAAGTAAACGATTAACTTGGGTAATTTGTTCAACTGTCAAACGATAAGTCCAACAAGTGGAATCGTTTAATGATGAAGTAGCAGGTGATAAGGCAAATGTAGGTAACAGATAATCATATATTCGATGTGTACACGAACTGTATGAAGAAAATCCACGAGTTACACGAATAATATCAAGAACACGAATATTTTCGGGCAAAGAGTTGTTCAATTTACTTAATAAATCTGTGTCTTCTTTTAATTGCATAGAACAAACTTGTCCAAGGGCGGAAACGGATTTGTCAGTTTTAGATGCACGTTGAACATGAACTCTTTTATGTTCTTCACTTGTCAGATTATCGAGTTGACCACAAGTAAAGA ] [-] EMBL CD133226 [ TAAAAATTATGAGTACCCTTATACTTTTCAAGTAAACGATTAACTTGGGTAATTTGTTCAACTGTCAAACGATAAGTCCAACAAGTGGAATCGTTTAATGATGAAGTAGCAGGTGATAAGGCAAATGTAGGTAACAGATAATCATATATTCGATGTGTACACGAACTGTATGAAGAAAATCCACGAGTTACACGAATAATATCAAGAACACGAATATTTTCGGGCAAAGAGTTGTTCAATTTACTTAATAAATCTGTGTCTTCTTTTAATTGCATAGAACAAACTTGTCCAAGGGCGGAAACGGATTTGTCAGTTTTAGATGCACGTTGAAAATGAACTCTTTTATGTTCTTCACTTGTCAGATTATCGAGTTGACTACAAGTAAAGAGAGCTTTAGACAGTTCTCCTTCAATAGTTGGAAAAACAGGGCATCTTTGCATGCCATAATAACCCCAACCTGAATACATCAACAAAATGGCATTATTCCTACGTTTAGGTCTGGTGGAAGCATT GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT G ] [+] EMBL CD141774 [ GTTCAATTTACTTAATAAATCTGTGTCTTCTTTTAATTGCATAGAACAAACTTGTCCAAGGGCGGAAACGGATTTGTCAGTTTTAGATGCACGTTGAAAATGAACTCTTTTATGTTCTTCACTTGTCAGATTATCGAGTTGACCACAAGTAAAGAGAGCTTTAGACAGTTCTCCTTCAATAGTTGGAAAAACAGGGCATCTTTGCATGCCATAATAACCCCAACCTGAATACATCAACAAAATGGCATTATTCCTACGTTTAGGTCTGGTGGAAGCATT GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTGTATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAA CGTTTAAAGTGC TTCTTTGG TAATTTCTTC TTTGCATACTAGCATAACAGCACGGCAGTTGAAACTGGTTTGAAAGTT ] [+] EMBL CD123013 [ CTTAATAAATCTGTGTCTTCTTTTAATTGCATAGAACAAACTTGTCCAAGGGCGGAAACGGATTTGTCAGTTTTAGATGCACGTTGAAAATGAACTCTTTTATGTTCTTCACTTGTCAGATTATCGAGTTGACCACAAGTAAAGAGAGCTTTAGACAGTTCTCCTTCAATAGTTGGAAAAACAGGGCATCTTTGCATGCCATAATAACCCCAACCTGAATACATCAACAAAATGGCATTATTCCTACGTTTAGGTCTGGTGGAAGCATT GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCCTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGNGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCANACAAGTGAAGACTGTACCACGGTGA ] [+] EMBL CD196067 [ AAAACAGGGCATCTTTGCATGCCATAATAACCCCAACCTGAATACAACAACAAAATGGCATTATTCCTACGTTTAGGTCTGGTGGAAGCATT GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTAGACAACC TTTTCATG ] [+] EMBL CD186951 [ ATAACCCCAACCTGAATACATCAACAAAATGGCATTATTCCTACGTTTAGGTCTGGTGGAAGCATT GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCCTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA TTCTTCTTTTGCATACTAGCATAACAGCACGGCAGT ] [+] EMBL CD187785 [ cgGGTCTGGTGGAAGCATT GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTT ] [+] EMBL CD132420 [ tgtGTCTGGTGGAAGCATT GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTT ] [+] EMBL CD183494 [ cctgtcaCTGGTGGAAGCATTCGGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA TTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGT ] [+] EMBL CD189324 [ T GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTGTCTTTAAAAATAAGTGCTTT ] [+] EMBL CD132390 [ T GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGC ] [+] EMBL CD187821 [ T GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCTAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACCTTTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTC TTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA CTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGTca ] [+] EMBL CD132409 [ T GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGGNAAA TTC TCTTTTGCATACTAGCATAACAGCACGGCAGNTGACACT GTTTGAAAagt ] [+] EMBL CD132400 [ T GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAAACAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACACGGGTTAAAAGTGCTTTCTTTGA NAANTTNCTC TTTGCATACTAGCATAACAGCACGGCAGTTGACACT GGTTGAAAa ] [+] EMBL CD187733 [ T GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCCTTGG TAA CTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGT ] [+] EMBL CD132417 [ T GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCGAAACATCAAAC AGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTTCTTGG NAA TTTCTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGT ] [+] EMBL CD189071 [ T GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA CTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGT ] [+] EMBL CD188998 [ T GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA CTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGANAGT ] [+] EMBL CD188769 [ T GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA CTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAG ] [+] EMBL CD187636 [ T GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAAGCAGAAAGAAATCCCTGAGACGGTTTTACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATC ] [+] EMBL CD189355 [ T GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAAT GTCATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTCTTTGATAACAGGTCGTTTATATATAT ] [-] EMBL CD133056 [ GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA TTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGTTCACTTGTGTGTCCAACATCCA ] [-] EMBL CD132381 [ GGAG AAACTAGGACTTGCCTCATCTACAATAGACCTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACCACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA TTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGTT ] [-] EMBL CD188957 [ GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAGTGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTA ] [-] EMBL CD190122 [ GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA TTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGTT ] [-] EMBL CD189457 [ GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGGCTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA TTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGTT ] [+] EMBL CD188643 [ tgcGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGCTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGATATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTACTCTTGTTGCTGTTTTTTGATAACAGGTCGCTTATATATATAATACTGCGCTAGTGATAGGACTGTGCACCCTGTGAGGGCTACACCG AACATCAGACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTANAGTGC TTCTTTGG TAA TTCTTCTTTTGCATACTAGCATAACAACACTGCAGTTGACACT GTTTGATAGTTCA ] [-] EMBL CD132421 [ GAGAAAACTAGGANCTGACTCATCTACAATAGACTTCGAAGAT GGTTG TGTATATTNGGTANCCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA TTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGTT ] [-] EMBL CD132413 [ GAG AAACTAGGAACTGACTCATCTACAATAGAC TCG AGATNNNGGTGTNGTATATT GGTANCCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA TTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGTT ] [-] EMBL CD200869 [ ATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCGCGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGG TTCTTTGG TAA TTCTTCTTTTGCATACCAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGTTCACTTGTGT TCCCAGACCGGGCCGGCCCAATCACTAGGAATT] [+] EMBL CD161052 [ GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTATATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA TTCTTCTTTTGCATACTAGCATAACAGNACGGCAGTTGACACT GTTTGAAAGT ] [-] EMBL CD132401 [ TCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTAG TAA TTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGTT ] [-] EMBL CD132388 [ GCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA TTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGTT ] [-] EMBL CD132391 [ TTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA TTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGTT ] [-] EMBL CD132399 [ GAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA TTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGTT ] [-] EMBL CD132404 [ TACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAACCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA TTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGTT ] consensusID : consensus_11215#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 922 fasta sequence [GTTTGGAGTATTTTTATCTTCCTAGAAAAGCTTTTCACGCTTAAAAGTAATATGATTCAGTTTATAGAACCAATCTCGTGTAGTATTAATTTTGCATTTCTCAAAATTCTCTATTCACTGAACCTGTATGTTGTAAATGTACACACTTCTATGGACACTCCCGGTGCGTATACATAAATTCATGCACTTCGTGTGTTGATATAAATGTTCACGACGATAGAAGCAGCTTTCCTCACCATACAACATAGGATACGAAATTGCTCTTATGGTAATCGACAACTATTTTTTGTTATTCCATATTTTGTAGGAAAGTTTCGGTCAATGATACACACTTTAGGCATGTTGCTTGTTAAGGAGTGTTTATGTATGCAAACACAATTAACTGTTCATAATCAAAAAGTCGAATAATTAGCGCACTAAATTGTCAACTAACCTTTGCATGCCATAATAACCCCAACCTGAATACATCAACAAAATGGCATTATTCCTACGTTTAGGTCTGGTGGAAGCATTGGAGAAACTAGGAACTGACTCATCTANCATAGACTTCGAAGATGGTTGTTGTATATTGGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCGAACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACACGGTTTAAAGTGCTTCTTTGGTAATTCTTCTTTTGCATACTAGCATAACAGCTCGGCAGTTGACACTGTTTGAAAGTTCACTTGTGTCCAGACAAA] [+] EMBL CD201731 [GTTTGGAGTATTTTTATCTTCCTAGAAAAGCTTTTCACGCTTAAAAGTAATATGATTCAGTTTATAGAACCAATCTCGTGTAGTATTAATTTTGCATTTCTCAAAATTCTCTATTCACTGAACCTGTATGTTGTAAATGTACACACTTCTATGGACACTCCCGGTGCGTATACATAAATTCATGCACTTCGTGTGTTGATATAAATGTTCACGACGATAGAAGCAGCTTTCCTCACCATACAACATAGGATACGAAATTGCTCTTATGGTAATCGACAACTATTTTTTGTTATTCCATATTTTGTAGGAAAGTTTCGGTCAATGATACACACTTTAGGCATGTTGCTTGTTAAGGAGTGTTTATGTATGCAAACACAATTAACTGTTCATAATCAAAAAGTCGAATAATTAGCGCACTAAATTGTCAACTAACCTTTGCATGCCATAATAACCCCAACCTGAATACATCAACAAAATGGCATTATTCCTACGTTTAGGTCTGGTGGAAGCATTGGAGAAACTAGGAACTGACTCATCTANCATAGACTTCGAAGATGGTTGTTGTATATTGGTA ] [-] EMBL CD187646 [ GGAGAAACTAGGAACTGACTCATCTACAATAGACTTCGAAGATGGTTGTTGTATATTGGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCGAACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACACGGTTTAAAGTGCTTCTTTGGTAATTCTTCTTTTGCATACTAGCATAACAGCTCGGCAGTTGACACTGTTTGAAAGTTCACTTGTGTCCAGACAAA] consensusID : consensus_11215#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 388 fasta sequence [TTGGAGAAACTAGGAACTGACTCATCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACCTTTTCATGTAGCCCCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACTCCGAACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACACGGTTTAAAGTGCTTCTTTGGTAATTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACTGTTTGAAAGT] [+] EMBL CD194815 [TTGGAGAAACTAGGAACTGACTCATCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACCTTTTCATGTAGCCCCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACTCCGAACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACACGGTTTAAAGTGCTTCTTTGGTAATTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACTGTTTGAAAGT] consensusID : consensus_11215#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 332 fasta sequence [ACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACCTTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCACGGTGAGCAATCGTAAGAACACGGTTTAAAGTGCTTCTTTGGTAATTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACTGTTTGAAAGT] [-] EMBL CD202346 [ACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACCTTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCACGGTGAGCAATCGTAAGAACACGGTTTAAAGTGCTTCTTTGGTAATTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACTGTTTGAAAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11215#0 GATTGACCAGCAATACGTATGATAGTATATTGATGCTCACCGAGTAAAAATGTAGGCATA 60 consensus_11215#3 ------------------------------------------------------------ consensus_11215#2 ------------------------------------------------------------ consensus_11215#1 ------------------------------------------------------------ consensus_11215#0 CATTCGGCCGATATAATATATCGACTACAACTACGATCCGTTACAAGTCTTCCTGAAGTG 120 consensus_11215#3 ------------------------------------------------------------ consensus_11215#2 ------------------------------------------------------------ consensus_11215#1 -----------------------------GTTTGGAGTATTTTTA--TCTTCCTAGAA-A 28 consensus_11215#0 AAATTATAAAAATTATGAGTACCCTTATACTTTTCAAGTAAACGATTAACTTGGGTAATT 180 consensus_11215#3 ------------------------------------------------------------ consensus_11215#2 ------------------------------------------------------------ consensus_11215#1 AGCTTTTCACGCTTAAAAGTAATATGATTCAGTTTATAGAACCAATCTCGTGTAGTATTA 88 consensus_11215#0 TGTTCAACTGTCAAACGATAAGTCCAACAAGTGGAATCGTTTAATGATGAAGTAGCAGGT 240 consensus_11215#3 ------------------------------------------------------------ consensus_11215#2 ------------------------------------------------------------ consensus_11215#1 ATTTTGCATTTCTCAAAATTC-TCTATTCACTGAACCTGTATGTTGTAAATGTACACACT 147 consensus_11215#0 GATAAGGCAAATGTAGGTAACAGATAATCATATATTCGATGTGTACACGAACTGTATGAA 300 consensus_11215#3 ------------------------------------------------------------ consensus_11215#2 ------------------------------------------------------------ consensus_11215#1 TCTATGGACACTCCCGGTG-CGTATA--CATAAATTCATGCACTTCGTGTGTTG-AT-AT 202 consensus_11215#0 GAAAATCCACGAGTTACACGAATAATATCAAGAACACGAATATTTTCGGGCAAAGAGTTG 360 consensus_11215#3 ------------------------------------------------------------ consensus_11215#2 ------------------------------------------------------------ consensus_11215#1 AAATGTTCACGA-CGATAGAAGCAGCTTTCCTCAC-CATACAACATAGGATACGAAATTG 260 consensus_11215#0 TTCAATTTACTTAATAAATCTGTGTCTTCTTTTAATTGCATAGAACAAACTTGTCCAAGG 420 consensus_11215#3 ------------------------------------------------------------ consensus_11215#2 ------------------------------------------------------------ consensus_11215#1 CTC--TTATGGTAATCGACAACTATTTTTTGTTA-TTCCATAT------TTTGT------ 305 consensus_11215#0 GCGGAAACGGATTTGTCAGTTTTAGATGCACGTTGAAAATGAACTCTTTTATGTTCTTCA 480 consensus_11215#3 ------------------------------------------------------------ consensus_11215#2 ------------------------------------------------------------ consensus_11215#1 --AGGAAAGTTTCGGTCAATGATACA--CACTTTAGGCATGTTGCTTGTTAAGGAGTGTT 361 consensus_11215#0 CTTGTCAGATTATCGAGTTGACCACAAGTAAAGAGAGCTTTAGACAGTTCTCCTTCAATA 540 consensus_11215#3 ------------------------------------------------------------ consensus_11215#2 ------------------------------------------------------------ consensus_11215#1 TATGTATGCAAACACAATTAACTGTTCATAATCAAAAAGTCGAATAATTAGCG--CACTA 419 consensus_11215#0 GTTGGAAAAACAGGGCATCTTTGCATGCCATAATAACCCCAACCTGAATACATCAACAAA 600 consensus_11215#3 ------------------------------------------------------------ consensus_11215#2 ------------------------------------------------------------ consensus_11215#1 AATTGTCAACTA----ACCTTTGCATGCCATAATAACCCCAACCTGAATACATCAACAAA 475 consensus_11215#0 ATGGCATTATTCCTACGTTTAGGTCTGGTGGAAGCATTGGAGAAACTAGGAACTGACTCA 660 consensus_11215#3 ------------------------------------------------------------ consensus_11215#2 ------------------------------------------------------------ consensus_11215#1 ATGGCATTATTCCTACGTTTAGGTCTGGTGGAAGCATTGGAGAAACTAGGAACTGACTCA 535 consensus_11215#0 TCTACAATAGACTTCGAAGATGGTTGTTGTATATTGGTAACCTCGCAAGACTTCAAAATG 720 consensus_11215#3 ---------------------------------------ACCTCGCAAGACTTCAAAATG 21 consensus_11215#2 -------------TTGGAGAAACTAGG---AACTGACTCATCTCGCAAGACTTCAAAATG 44 consensus_11215#1 TCTANCATAGACTTCGAAGATGGTTGTTGTATATTGGTAACCTCGCAAGACTTCAAAATG 595 * ******************* consensus_11215#0 GACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACCTTTTCATGTAGCCTCAC 780 consensus_11215#3 GACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACCTTTTCATGTAGCCTCAC 81 consensus_11215#2 GACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACCTTTTCATGTAGCCCCAC 104 consensus_11215#1 GACATTATAGACAGAAAGAAATCC------------------------------------ 619 ************************ consensus_11215#0 GTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGT 840 consensus_11215#3 GTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGT 141 consensus_11215#2 GTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGT 164 consensus_11215#1 GTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGT 679 ************************************************************ consensus_11215#0 GCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGG 900 consensus_11215#3 GCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGG 201 consensus_11215#2 GCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGG 224 consensus_11215#1 GCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGG 739 ************************************************************ consensus_11215#0 GCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCGAACATCAAACAAGTGAAGACT 960 consensus_11215#3 GCTAGTGAAAGGACTGTGTACCCTGTGAGGGC---------------------------- 233 consensus_11215#2 GCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACTCCGAACATCAAACAAGTGAAGACT 284 consensus_11215#1 GCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCGAACATCAAACAAGTGAAGACT 799 ******************************** consensus_11215#0 GTACCACGGTGAGCAATCGTAAGAACACGGTTTAAAGTGCTTCTTTGGTAATTCTTCTTT 1020 consensus_11215#3 -----ACGGTGAGCAATCGTAAGAACACGGTTTAAAGTGCTTCTTTGGTAATTCTTCTTT 288 consensus_11215#2 GTACCACGGTGAGCAATCGTAAGAACACGGTTTAAAGTGCTTCTTTGGTAATTCTTCTTT 344 consensus_11215#1 GTACCACGGTGAGCAATCGTAAGAACACGGTTTAAAGTGCTTCTTTGGTAATTCTTCTTT 859 ******************************************************* consensus_11215#0 TGCATACTAGCATAACAGCACGGCAGTTGACACTGTTTGAAAGTTCACTTGTGTGTCCAA 1080 consensus_11215#3 TGCATACTAGCATAACAGCACGGCAGTTGACACTGTTTGAAAGT---------------- 332 consensus_11215#2 TGCATACTAGCATAACAGCACGGCAGTTGACACTGTTTGAAAGT---------------- 388 consensus_11215#1 TGCATACTAGCATAACAGCTCGGCAGTTGACACTGTTTGAAAGTTCACTTGTGT-CCAGA 918 ******************* ************************ consensus_11215#0 CATCCAGCCGGCCCAATCACTAGGAATT 1108 consensus_11215#3 ---------------------------- consensus_11215#2 ---------------------------- consensus_11215#1 CAAA------------------------ 922 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||