These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11219#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 37 consensus length = 883 fasta sequence [TACGCAGTACGGTAATGCAGTTGCATGGCATGTTTATTTTTTTTTTTTTTTTTTTTTTACACAGTAAAGAACAATTTTAATATTTACTGATTTCAATAACAAGACTATTTGACACTGTTGGCTAATGCTAAACCGACCAAAAGTTATCTAC-T-CTGAAATACAGAAAACCTATT-TGTTTTAGTCCAGCAGCATGTTTTTGC-GTATGTTAGCATACACTTCTTTCATTTCCTTCCATTTTAAAGCCATATTGTCCATCATTTCATCCGCACCCGGGGACTTCGGTGTCATAGATTTTCCTTCTGCTAAAAGGATGTTTAATTCTTTCTCCAAGATATCAAATCGTTTAAGCAGATCAGCATTTTCTGGTTTATCTTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAGCGCTGCTCATCAACGA-GAAGGAACCAGTGACCACAAAAGCAACGTGCAGGAAGATTACGATACAAAACCAAAGATTTTAGATGATGGTCGTGAGGACTACAGTGACATTGTTGAACAGCTCTGACATTAGAACTAGCAACGAGATTAGGATTTTCTTTAGTA--CT-AGACTTGA-TTTCTCCACGACTGGTGTCC-GGTTCTACTTCTGAAATCTCCGCGATAAGATCTTCTTGCAACCACGACAGCTTACTTTCCACAGGCACATTCAAGTCTCCAGAA---ACTGTATCGAAGAGGTTACGGTTGTCGGTAATAAACTTAAGCATTCTGTCTTTTATTCCACCGGCAACAGCGGGACTCACTGAAGACGAAAATCGAGGTAGTAATCTCAAAATTGATGACGCTAGCCTGAAACTTGGACGGAGAGCCATTAAAATGCAAACCACTGGCGCCTGCACGGTAAAC-AAGTCAGATCCC] [+] EMBL AI975916 [TACGCAGTACGGTAATGCAGTTGCATGGCATGTTTATTTTTTTTTTTTTTTTTTTTTTACACACAAAAGAACAATTTTAATATTTACTGATTTTAATAACACGACTATTTGACACT ] [+] EMBL CD074789 [ GTAAAGAACAATTTTAATATTTACTGATTTCAATAACAAGACTATTTGACACTGTTGGCTAATGCTAAACCGACCAAAAGTTATCTAC T CTGAAATACAGAAAACCTATT TGTTTTAGTCCAGCAGCATGTTTTTGC GTATGTTAGCATACACTTCTTTCATTTCCTTCCATTTTAAAGCCATATTGTCCATCATTTCATCCGCACCCGGGGACTTCGGTGTCATAGATTTTCCTTCTGCTAAAAGGATGTTTAATTCTTTCTCCAAGATATCAAATCGTTTAAGCAGATCAGCATTTTCTGGTTTATCTTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAGCGCTGCTCATCAACGA GAAGGAACCAGTGACCACAAAAGCAACGTGCAGGAAGATTACGATACAAAACCAAAGATTTTAGATGATGGTCGTGAGGACTACAGTGACATTGTTGAACAGCTCTGACATTAGAACTAGCAACGAGATTAGGATTTTCTTTAGTA CT AGACTTGA TTTCTCCACGACTGGTGTCC GGTTCTACTTCTGAAATCTCCGCGATAAGATCTTCTTGCAACCACGACAGCTTACT ] [+] EMBL CD073118 [ GTAAAGAACAATTTTAATATTTACTGATTTCAATAACAAGACTATTTGACACTGTTGGCTAATGCTAAACCGACCAAAAGTTATCTAC T CTGAAATACAGAAAACCTATT TGTTTTAGTCCAGCAGCATGTTTTTGC GTATGTTAGCATACACTTCTTTCATTTCCTTCCATTTTAAAGCCATATTGTCCATCATTTCATCCGCACCCGGGGACTTCGGTGTCATAGATTTTCCTTCTGCTAAAAGGATGTTTAATTCTTTCTCCAAGATATCAAATCGTTTAAGCAGATCAGCATTTTCTGGTTTATCTTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAGCGCTGCTCATCAACGA GAAGGAACCAGTGACCACAAAAGCAACGTGCAGGAAGATTACGATACAAAACCAAAGATTTTAGATGATGGTCGTGAGGACTACAGTGACATTGTTGAACAGCTCTGACATTAAAACTAGCAACGAGATTAGGATTTTCTTT ] [-] EMBL AI740234 [ TAAAGAACAATTTTAATATTTACTGATTTCAATAACAAGACTATTTGACACTGTTGGCTAATGCTAAACCGACCAAAAGTTATCTAC T CTGAAATACAGAAAACCTATT TGTTTTAGTCCAGCAGCATGTTTTTGC GTATGTTAGCATACACTTCTTTCATTTCCTTCCATTTTAAAGCCATATTGTCCATCATT ] [+] EMBL CD145674 [ TAGTGCTAAACCGACCAAAAGTTCTCTAC T CTGAAACACAAAACACCTATTGTGTTTAACTCCACCACCGTGTTTTTGCTGTATGTTACCATACACTTCTTTAATTTCCTTCCATTTAAAAGCCATATTGTCCATCATTTCATCCGCACCCGGGGACTTCGGTGTCATAAATTTTCCTTCTGCTAAAAGGATGTTTAATTCTTTCTCCAAGATATCAAATCGTTTAAGCAGATCAGCATTTTCTGGTTTATCTTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAGCGCTGCTCATCAACGA GAAGGAACCAGTGACCACAAAAGCAACGTGCAGGAAGATTACGATACAAAACCAAAGATTTTAGATGATGGTCGTGAGGACTACAGTGACATTGTTGAACAGCTCTGACATTAGAACTAGCAACGAGATTAGGATNTTCTTTAGTA CT AGACTTGA TTTCTCCACGACTGGTGTCC GGTTCTACTTCTGAAATCTCCGCGATAAGATCTTCTCGC ACCACGACAGCTTACTTTCCACA GCACATTCAAGTCTCCAGAA ACTGTATCGAAGA GTTACGGTTGTCGG AATAAACTTAAGCTTTCTGTCTTT ] [+] EMBL CD145388 [ AATGCTAAACCGACCAAAAGTTATCTAC T CTGAAATACAGAAAACCTATT TGTTTTAGTCCAGCAGCATGTTTTTGC GTATGTTAGCATACACTTCTTTCATTTCCTTCCATTTTAAAGCCATATTGTCCATCATTTCATCCGCACCCGGGGACTTCGGTGTCATAGATTTTCCTTCTGCTAAAAGGATGTTTAATTCTTTCTCCAAGATATCAAATCGTTTAAGCAGATCAGCATTTTCTGGTTTATCTTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAG ] [+] EMBL CD202443 [ GCTAAACCCACCAAAAGTTATCTAC T CTGAACTACAGAAAACCTATT TGTTTTAGCCCAGCAGCATGTTTGTGC GTATGATAACATACACTTCTTACATTCCCTTCCATTTTAAAGCCATATTGTCCATCATTTTATCCGCACCCGGGGACTTCGGTGTCATAAATTTTCCTTCTGCTAAAAGGATGTTAAATTCTTTCTCCAAGATATCAAATCGTTTAAGCAGATCAGCATTTTCTGGTTAATCTTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAGCGCTGCTCATCAACGA GAAGGAACCAGTGACCACAAAAGCAACGTGCAGGAAGATTACGATACAAAACCAAAGATTTTAGATGATGGTCGTGAGGACTACAGTGACATTGTTGAACAGCTCTGACATTAGAACTAGC ] [+] EMBL CD145669 [ GCTAACCCGACCAAAAGTTATCTAC T CTGAAATACAGAAAACCTATT TGTTTTAGTCCAACAGCATGTTTTTGC GTATGTTAGCATACACTTCTTTCATTCCCTTCCATTCTAAAGCCATATTGTCCATCATTTCATCCGCACCCGGGGACTTCGGTGTCATAGATTTTCCTTCTGCTAAAAGGATGTTTAATTCTTTCTCCAAGATATCAAATCGTTTAAGCAGATCAGCATTTTCTGGTTTATCTTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAG ] [+] EMBL CD145679 [ GCTAACCCGACCAAAAGTTATCTAC TGCTGAAATACAGAAAACCTATT TGTTTTAGTCCAGCAGCATGTTTGTGC GTATGTTAGCATACACTTCTTTCATTTCCTTCCATTTTAAAGCCATATTGTCCATCATTTCATCCGCACCCGGGGACTTCGGTGACATAGATTTTCCTTCTGCTAAAAGGATGTTTAATTCTTTCTCCAAGATATCAAATCGTTTAAGCAGATCAGCATTTTCTGGTTTATCTTTAATTTTATTCCACTTTTTCTCCCGCTCCTCCTCATAGCGCTGCTCATCAACGA GAAGGAACCAGTGACCACAAAAGCAACGTGCAGGAAGATTACGATACAAAACCAAAGATT ] [+] EMBL CD145715 [ CTAACCCGACCAAAAGTTATCTAC T CTGAAATACAGAAAACCTATT TGTTTTAGTCCAACAGCATGTTTTCGC GTATGTTAACATACACTTCTTTCATTCCCTTCCATTTTAAAGCCATATTGTCCATCATTTCATCCGCACCCGGGGACTTCGGTGTCATAGATTTTCCTTCTGCTAAAAGGATGTTTAATTCTTTCTCCAAGATATCAAATCGTTTAAGCAGATCAGCATTTTCTGGTTTATCTTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAG ] [+] EMBL CD145641 [ CTAAACCGACCAAAAGTTATCTAC T CTGAAATACAAAAAACCTATT TGTTTTATTCCAACAACATGTTTTTGC GTATGTTAACATACACTTCTTTCATTTCCTTCCATTTTAAAGCCATATTGTCCATCATTTCATCCGCACCCGGGGACTTCGGTGTCATAAATTTTCCTTCTGCTAAAAGGATGTTTAATTCTTTCTCCAAGATATCAAATCGTTTAAGCAGATCAGCATTTTCTGGTTTATCTTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAGCGCTGCTCATCAACGA GAAGGAACCAGTGACCACAAAAGCAACGTGCAGGAAGATTACGATACAAAACCAAAGATTTTAGATGATGGTCGTGAGGACTACAGTGACATTGTTGAACAGCTCTGACATTAGAACTAGCAACGAGATTAGGATTTTCTTTAGTA CT AGACTTGA TTTCTCCACGACTGGTGTCC GGTTCTACTTCTGAAATCTCCGCGATAA ] [+] EMBL CD145699 [ CTAACCCGACCAAAGGTTATCTAC T CTGAAATACAAAAAACCTATT TGTTTTAGCCCACCAGCATGTTTTTGC GTATGTTACCATACACTTCTTTCATTTCCTTCCATTTAAAAGCCATATTGTCCATCATTTCATCCGCACCCGGGGACTTCGGGGTCATAAATTTTCCTTCTGCTAAAAGGATGTTTAATTCTTTCTCCAAGATATCAAATCGTTTAAGCAGATCAGCATTTTCTGGTTTATCTTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAGCGCTGCTCATCAACGA GAAGGAACCAGTGACCACAAAAGCAACGTGCAGGAAGATTACGATACAAAACCAAAGATTTTAGATGATGGTCGTGAGGACTACAGTGACATTGTTGAACA ] [+] EMBL CD145580 [ AAACCGACCAAAAGTTATCTAC T CTGAAATACAGAAAACCTATT TGTTTTAGTCCAGCAGCATGTTTTTGC GTATGTTAGCATACACTTCTTTCATTTCCTTCCATTTTAAAGCCATATTGTCCATCATTTCATCCGCACCCGGGGACTTCGGTGTCATAGATTTTCCTTCTGCTAAAAGGATGTTTAATTCTTTCTCCAAGATATCAAATCGTTTAAGCAGATCAGCATTTTCTGGTTTATCTTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAGCGCTGCTCATCAACGA GAAGGAACCAGTGACCACAAAAGCAACGTGCAGGAAGATTACGATACAAAACCAAAGATTTTAGATGATGGTCGTGAGGACTACAGTGACATTGTTGAACAGCTCTGACATTAGAACTAGCAACGAGATTAGGATTTTCTTTAGTA CT AGACTTGA TTTCTCCACGACTGGTGTCCNGGTTCTACTTCTGAAATCTCCGCGATAAGATCTTCTTGCAACCACGACAGCTTACTTTCCACAGGCACATTCAAGTCTCCAGAAACTACTGTATCGAAGAAGGTACGGTTGTCGGTAATAAACTT AGCATCCTGTCTTTa ] [+] EMBL CD145391 [ AAACCGACCAAAAGTTATCTAC TACTGAAATACAGAAAACCTATT TGTTTTAGTCCAGCAGCATGTTTTTGC GTATGTTAGCATACACTTCTTTCATTTCCTTCCATTTTAAAGCCATATTGTCCATCATTTCATCCGCACCCAGGGACTTCGGTGTCATAGATTTTCCTTCTGCTAAAAGGATGTTTAATTCTTTCTCCAAGATATCAAATCGTTTAAGCAGATCAGCATTTTCTGGTTTATCTTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAGCGCTGCTCATCAACGA GAAGGAACCAGTGACCACAAAAGCAACGTGCAGGAAGATTACGATACAAAACCAAAGATTTTAGATGATGGTCGAGAGGACTACAGTGACATTGTTGAACAGCTCTGACATTAGAACTAGCAACGAGATTAGGATTTTCTTTAGTA CT AGACTTGA TTTCTCCACGACTGGTGTCC GGTTCTACTTCTGAAATCTCCGCGATAA ] [+] EMBL CD145419 [ AAACCGACCAAAAGTTATCTAC TACTGAAATACAGAAAACCTATT TGTTTTAGTCCAGCAGCATGTTTTTGC GTATGTTAGCATACACTTCTTTCATTTCCTTCCATTTTAAAGCCATATTGTCCATCATTTCATCCGCACCCGGGGACTTCGGTGTCATAGATTTTCCTTGTGCTAAAAGGATGTTTAATTCTTTCTCCAAGATATCAAATCGTTTAAGCAGATCAGCATTTTCTGGTTTATCTTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAG ] [+] EMBL CD145450 [ AAACCGACCAAAAGTTATCTACGT CTGAAATACAGAAAACCTATT TGTTTTAGTCCAGCAGCATGTTTTTGC GTATGTTAGCATACACTTCTTTCATTTCCTTCCATTTTAAAGCCATATTGTCCATCATTTCATCCGCACCCGGGGACTTCGGTGTCATAGATTTTCCTTCTGCTAAAAGGATGTTTAATTCTTTCTCCAAGATATCAAATCGTTTAAGCAGATCAGCATTTTCTGGTTTATCTTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAG ] [-] EMBL CD145573 [ AACCGACCAAAAGTTATCTAC T CTGAAATACAGAAAACCTATT TGTTTTAGTCCAGCAGCATGTTTTTGC GTATGTTAGCATACACTTCTTTCATTTCCTTCCATTTTAAAGCCATATTGTCCATCATTTCATCCGCACCCGGGGACTTCGGTGTCATAGATTTTCCTTCTGCTAAAAGGATGTTTAATTCTTTCTCCAAGATATCAAATCGTTTAAGCAGATCAGCATTTTCTGGTTTATCCTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAGC ] [-] EMBL CD145590 [ AACCGACCAAAAGTTATCTAC T CTGAAATACAGAAAACCTATT TGTTTTAGTCCAGCAGCATGTTTTTGC GTATGTTAGCATACACTTCTTTCATTTCCTTCCATTTTAAAGCCATATTGTCCATCATTTCATCCGCACCCGGGGACTTCGGTGTCATAGATTTTCCTTCTGCTAAAAGGATGTTTAATTCTTTCTCCAAGATATCAAATCGTTTAAGCAGATCAGCATTTTCTGGTTTATCTTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAGC ] [-] EMBL CD145481 [ AACCGACCAAAAGTTATCTAC T CTGAAATACAGAAAACCTATT TGTTTTAGTCCAGCAGCATGTTTTTGC GTATGTTAGCATACACTTCTTTCATTTCCTTCCATTTTAAAGCCATATTGTCCATCATTTCATCCGCACCCGGGGACTTCGGTGTCATAGATTTTCCTTCTGCTAAAAGGATGTTTAATTCTTTCTCCAAGATATCAAATCGTTTAAGCAGATCAGCATTTTCTGGTTTATCTTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAGC ] [-] EMBL CD153280 [ ACCGACCAAAAGTTATCTAC T CTGAAATACAGANAACCTATT TG TTTAGTCCAGCAGCATGTTTNTGC GTATGTTAGCATACACTTCTTTCATTTCCTTCCATTNTAAAGCCATATTGTCCATCATTTCATCCGCACCCGGGGACTTCGGTGTCATAGATTTTCCTTCTGCTAAAAGGATGTTTAATTCTTTCTCCAAGATATCAAATCGTTTAAGCAGATCAGCATTTTCTGGTTTATCTTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAGCGCTGCTCATCAACGA GAAGGAACCAGTGACCACAAAAGCAACGTGCAGGAAGATTACGATACAAAACCAAAGATTTTAGATGATGGTCGTGAGGACTACAGTGACATTGTTGAACAGCTCTGACATTAGAACTAGCAACGAGATTAGGATTTTCTTTAGTA CT AGACTTGA TTTCTCCACGACTGGTGTCC GGTTCTACTTCTGAAATCTCCGCGATAAGATCTTCTTGCAACCACGACAGCTTACTTTCCACAGGCACATTCAAGTCTCCAGAA ACTGTATCGAAGAGGTTACGGTTGTCGGTAATAAACTTAAGCATTCTGTCTTTTA ] [-] EMBL CD150494 [ gTTCCCTTCTATTTTAAAGCCATATTGTCCATCATTTCATCCGCACCCGGGGACTTCGGTGTCATAGATTTTCCTTCTGCTAAAAGGATGTTTAATTCTTTCTCCAAGATATCAAATCGTTTAAGCAGATCAGCATTTTCTGGTTGATCTTTAATTTTATTCCACTTGTTCTCTCGCTCCTCCTCATAGCGCTGCTCATCAACGA GAAGGAACCAGTGACCACTAAAGCAAAGTGCAGGAAGATTACGATACAAAACCAAAGATTTTAGATGATGGTCGTGAGGAATACAGTGACATTGTTGAACAGCTATGACATTAGAACTAGCAACGAG ] [-] EMBL CD152088 [ cAAAGCCATATTGTCCATCATNTCATCCGCACCCGGAGACTTCGGTGTCATAGATTTTCCTTCTGCTAAAAGGATGTGTAATTCTTTCTCCAAGATATCAAATCGTTTAAGCAGATCAGCATTTTCTGGTTTATCTTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAGCGCTGCTCATCAACGA GAAGGAACCAGTGACCACAAAAGCAACGTGCAGGAAGATTACGATACAAAACCAAAGATTTTAGATGATGGTCGTGAGGACTACAGTGACATTGTTGAACAGCTCTGACATTAGAACTAGCAACGAGATTAGGATTTTCTTTAGTA ] [-] EMBL CD152152 [ CATATTGTCCATCATTTCATCCGCACCCGGGGACTTCGGTGTCATAGATTTTCCTTCTGCTAAAAGGATGTTTAATTCTTTCTCCAAGATATCAAATCGTTTAAGCAGATCAGCATTTTCTGGTTTATCTTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAGCGCTGCTCATCAACGA GAAGGAACCAGTGACCACAAAAGCAACGTGCAGGAAGATTACGATACAAAACCAAAGATTTTAGATGATGGTCGTGAGGACTACAGTGACATTGTTGAACAGCTCTGACATTAGAACTAGCAACGAGATTAGGATTTTCTTTAGTA CT AGACTTGATTTTCTACACAAGTGG ] [-] EMBL CD060114 [ ATCATTTCATCCGCACCCGGGGACTTCGGTGTCATAGATTTTCCTTCTGCTAAAAGGATGTTTAATTCGTTCTCCAAGATATCCAATCGTTTAAGCAGATCAGCATTTTCTGGTTTATCTGTAATTTTAATCCACTTTTTCTCTCGCTCCTCCTCATAGCGCTGCTCATCAACGACGAAGGAACCAGTGACCACAAAAGCAACGTGCAGGAAGATTACGATACTATACCAAAGATTTTAGATGATGATCGTGAGGACTACAGTGACATTGTTGAACAGCTCTGACATTAGAACTAGCAACGAGATTAGGATTTTCTTTAGTA CT AGACTTGA TTTCTCCACGACTGGTGTCC GG ] [+] EMBL CD092063 [ TCCGCACCCGGGGACTTCGGTGTCATAGATTTTCCTTCTGCTAAAAGGATGTTTAATTCTTTCTCCAAGATATCAAATCGTTTAAGCAGATCAGCATTTTCTGGTTTATCTTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAGCGCTGCTCATCAACGA GAAGGAACCAGTGACCACAAAAGCAACGTGCAGGAAGATTACGATACAAAACCAAAGATTTTAGATGATGGTCGTGAGGACTACAGTGACATTGTTGAACAGCTCTGACATTAGAACTAGCAACGAGATTAGGATTTTCTTTAGTA CT AGACTTGA TTTCTCCACGACTGGTGTCC GGTTCTACTTCTGAAATCTCCGCGATAAGATCTTCTTGCAACCACGACAGCTTACTTTCCACAGGCACATTCAAGTCTCCAGA ] [+] EMBL CD132335 [ CACCCGGGGACTTCGGTGTCATAGATTTTCCTTCTGCTAAAAGGATGTTTAATTCTTTCTCCAAGATATCAAATCGTTTAAGCAGATCAGCATTTTCTGGTTTATCTTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAGCGCTGCTCATCAAC ] [+] EMBL CD152069 [ GTGTCATAGATTTTCCTTCTGCTAAAAGGATGTTTAATTCTTTCTCCAAGATATCAAATCGTTTAAGCAGATCAGCATTTTCTGGTTTATCTTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAGCGCTGCTCATCAACGA GAAGGAACCAGTGACCACAAAAGCAACGTGCAGGAAGATTACGATACAAAACCAAAGATTTTAGATGATGGTCGTGAGGACTACAGTGACATTGTTGAACAGCTCTGACATTAGAACTAGNCACGAGATTAGGATTTTCTTTAGTA CT AGACTT ] [-] EMBL CD145493 [ aTTTCCTTCTGCTAAAAGGATGTTTAATTCTTTCTCCAAGATATCAAATCGTTTAAGCAGATCAGCATTNTCTGGTTTATCTTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAGCGCTGCTCATCAACGA GAAGGAACCAGTGACCACAAAAGCAACGTGCAGGAAGATTACGATACAAAACCAAAGATTTTAGACGATGGTCGTGAGGACTACAGTGACATTGTTGAACAGCTCTGACATTAGAACTAGCAACGAGATTAGGATTTTCTTTAGTA CT AGACTTGA TTTCTCCACGACTGGTGTCC GGTTCTACTTCTGAAATCTCCGCGATAAGATCTTCTTGCAACCACGACAGCTTACTTTCCACAGGCACATTCAAGTCTCCAGAAACTACTGTATCGAAGAGGTTACGGTTGTCGGTAATAAACTTAAGCATTCTGTCTTTTA ] [-] EMBL AI976841 [ CAAGATATCAAATCGTTTAAGCAGATCAGCATTTTCTGGTTTATCTTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAGCGCTGCTCATCAACGA GAAGGAACCAGTGACCACAAAAGCAACGTGCAGGAAGATTACGATACAAAACCAAAGATTTTAGATGATGGTCGTGAGGACTACAGTGACATTGTTGAACAGCTCTGACATTAGAACTAGCAACGAGATTAGGATTTTCTTTAGTA CT AGACTTGA TTTCTCCACGACTGGTGTCC GGTTCTACTTCTGAAATCTCCGCGATAAGATCTTCTTGCAACCACGACAGCTTACTTTCCACAGGCACATTCAAGTCTCCAGAAACTACTGTATCGAAGAGGTTACGGTTGTCGGTAATAAACTTAAGCATTCTGTCTTTTATTCCACCGGCAACAGCGGGACTCACTGAAGACGAAAATCGAGGTAGTAATCTCAAAATTGATGACGCTAGCCTGAAACTTGGACGGAGAGCCATTAAAATGCAAACCACTGGCGCCTGCACGGTAAACAAAGTCAGATCCC] [-] EMBL CD152067 [ TATCAAGTCGTTTAAGCAGATCAGCATCTTCTGGTTTATCTCTAATNTTATTCCACTTTTTCTCTCGCTCCTCCTCATAGCGCTGCTCATCAACGA GAAGGAACCAGTGACCACAAAAGCAACGTGCAGGAAGATTACGATACAAAACCAAAGATTTTAGATGATGGTCGTGAGGACTACAGTGACATTGTTGAACAGCTCTGACATTAGAACTAGCAACGAGATTAGGATTTTCTTTAGTA ] [-] EMBL CD155019 [ GTTTAAGCAGATCAGCATTTTCTGGTTTATCTTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAGCGCTGCTCATCAACGA GAAGGAACCAGTGACCACAAAAGCAACGTGCAGGAAGATTACGATACAAAACCAAAGATTTTAGATGATGGTCGTGAGGACTACAGTGACATTGTTGAACAGCTCTGACATTAGAACTAGCAACGAGATTAGGATTTTCTTTAGTA CT AGACTTGA TTTCTCCACGACTGGTGTCC GGTTCTACTTCTGAAATCTCCGCGATAAGATCTTCTTGCAACCACGACAGCTTACTTTCCACAGGCACATTCAAGTCTCCAGAA ACTGTATCGAAGAGGTTACGGTTGTCGGTAATAAACTTAAGCATTCCGTCTTTTATTCCACCGGCAACAGCGGGACTCACTGAAGACGAAAATCGAGGTAGTAATCTCAAAATTGATGACGCTAGCCTGAAACTTGGACGGAGAGCCATTAAAATGCAAACCACTGGCGCCTGCACGGTAAAC AAGTCAGATCCC] [-] EMBL CD139001 [ GCTCATCAACGA GAAGGAACCAGTGACCACAAAAGCAACGTGCAGGAAGATTACGATACAAAACCAAAGATTTTAGATGATGGTCGTGAGGACTACAGTGACATTGTTGAACAGCTCTGACATTAGAACTAGCAACGAGATTAGGATTTTCTTTAGTA CT AGACTTGA TTTCTCCACGACTGGTGTCC GGTTCTACTTCTGAAATCTCCGCGATAAGATCTTCTTGCAACCACGACAGCTTACTTTCCACAGGCACATTCAAGTCTCCAGAA ACTGTATCGAAGAGGTTACGGTTGTCGGTAATAAACTTAAGCATTCTGTCTTTT ] [-] EMBL CD138962 [ GAAGGAACCAGTGACCACAAAAGCAACGTGCAGGAAGATTACGATACAAAACCAAAGATTTTAGATGATGGTCGTGAGGACTACAGTGACATTGTTGAACAGCTCTGACATTAGAACTAGCAACGAGATTAGGATTTTCTTTAGTA CT AGACTTGA TTTCTCCACGACTGGTGTCC GGTTCTACTTCTGAAATCTCCGCGATAAGATCTTCTTGCAACCACGACAGCTTACTTTCCACAGGCACATTCAAGTCTCCAGAA ACTGTATCGAAGGGGTTACGGTTGTCGGTAATAAACTTAAGCATTCTGTCTTTT ] [+] EMBL CD111504 [ ATACAAAACCAAAGATTTTAGATGATGGTCGTGAGGACTACGGTGACATTGTTGAACAGCTCTGACATTAGAACTAGCAACGAGATTAGGATTTTCTTTAGTA CT AGACTTGA TTTCTCCACGACTGGTGTCC GGTTCTACTTCTGAAATCTCCGCGATAAGATCTTCTTGCAACCACGACAGCTTACTTTCCACAGGCACATTCAAGTCTCCAGAA ACTGTATCGAAGAGGTTACGGTTGTCGGTAATAAACTTAAGCATTCTGTCTTTTATTCCACCGGCAACAGCGGGACCCACTGAAGACGAAAATCGAGGTAGTAATCTCAAAATTGATGACGCTAGCCTGAAACTTGGACGGAGAGCCATTAAAATGCAAACCACTGGCGCCTGCACGGTAAAC AA ] [-] EMBL CD122122 [ ATTAGGATTTTCTTTAGTA GT AGACTTGA TTTCTCCACGACTGGTGTCC GGTTGTACTTGTGAAATCTCCGCGATAAGATCTTCTTGCAACCACGACAGTTTACTTTCCACAGGCACATTCAAGTCTCCAGAAAGTACTGTATCGAAGAGGTTACGGTTGTCGGTAATAAACTTAAGCATTCTGTCTTTTATTCCACCGGCAACAGCGGGAGTCACTGAAGACGAAAATCTAGGTAGTAACCTCAAAATTGAAGACGCTAGCCTGAAACTTGGACGGAGAGCCATTAAAAAGCAAACCACTGGCGCCTGCACGGTAAACAAAGTCAG ] [+] EMBL CD187218 [ atcgaggTAGTAATCTCAAAATTGA TTTCTCCACGACTGGTGTCC GGTTCTACTTCTGAAATCTCCGCGATAAGATCTTCTTGCAACCACGACAGCTTACTTTCCACAGGCACATTCAAGTCTCCAGAA ACTGTATCGAAGAGGTTACGGTTGTCGGTAATAAACTTAAGCATTCTGTCTTTTATTCCACCGGCAACAGCGGGACTCACTGAAGACGAAAATCGAGG ] [-] EMBL CD154901 [ GGGACTCACTGAAGACGAAAATCGAGGTAGTAATCTCAAAATTGATGACGCTAGCCTGAAACTTGGACGCAGAGCCATTAAAATGCAAACCAATGGCGCCTGCACGGTACAC AAGTCAGATCCC] consensusID : consensus_11219#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 773 fasta sequence [TAAAGACCAATTTAATATTTCTGATTTCATAACAAGACTATTTGACACTGTGGNTAATGCTAAACGACCAAAAGTATCTATCTGAATGCGTATGTAGGCATACACTTCTTTCATTTCCTTCCATNTTANAGCCATATGTCNCATCATNTCATCCGCACCCGGGGACTTCGGTGTCATAGATTTTCCTTCTGCTAAAAGGATGTTTAATTCTTTCTCCAAGATATCAAATCGTTTAAGCAGATCAGCATTNTCTGGTTTATCTTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAGCGCTGCTCATCAACGAGAAGGAACCAGTGACCACAAAAGCAACGTGCAGGAAGATTACGATACAAAACCAAAGATTTTAGATGATGGTCGTGAGGACTACAGTGACATTGTTGAACAGCTCTNNNNNNNNNNNNNNNNNCGAGATTAGGATTTTCTTTAGTACTAGACTTGATTTCTCCACGACTGGTGTCCGGTTCTACTTCTGAAATCTCCGCGATAAGATGTTCTTGCAACCACGACAGCTTACTTTCCACAGGCACATTCAAGTCTCCAGAATGTCGGTAATAAACTTAAGCATTCTGTCTTTTATTCCACCGGCAACAGCGGGACTCACTGAAGACGAAAATCGAGGTAGTAATCTCAAAATTGATGACGCTAGCCTGAAACTTGGACGGAGAGCCATTAAAATGCAAACCACTGGCGCCTGCACGGTAAACAAAGTCAGATCCCTTCAAAGTCACCCGCCGTTCCG] [-] EMBL CD080957 [TAAAGACCAATTTAATATTTCTGATTTCATAACAAGACTATTTGACACTGTGGNTAATGCTAAACGACCAAAAGTATCTATCTGAATGCGTATGTAGGCATACACTTCTTTCATTTCCTTCCATNTTANAGCCATATGTCNCATCATNTCATCCGCACCCGGGGACTTCGGTGTCATAGATTTTCCTTCTGCTAAAAGGATGTTTAATTCTTTCTCCAAGATATCAAATCGTTTAAGCAGATCAGCATTNTCTGGTTTATCTTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAGCGCTGCTCATCAACGAGAAGGAACCAGTGACCACAAAAGCAACGTGCAGGAAGATTACGATACAAAACCAAAGATTTTAGATGATGGTCGTGAGGACTACAGTGACATTGTTGAACAGCTCTNNNNNNNNNNNNNNNNNCGAGATTAGGATTTTCTTTAGTACTAGACTTGATTTCTCCACGACTGGTGTCCGGTTCTACTTCTGAAATCTCCGCGATAAGATGTTCTTGCAACCACGACAGCTTACTTTCCACAGGCACATTCAAGTCTCCAGAATGTCGGTAATAAACTTAAGCATTCTGTCTTTTATTCCACCGGCAACAGCGGGACTCACTGAAGACGAAAATCGAGGTAGTAATCTCAAAATTGATGACGCTAGCCTGAAACTTGGACGGAGAGCCATTAAAATGCAAACCACTGGCGCCTGCACGGTAAACAAAGTCAGATCCCTTCAAAGTCACCCGCCGTTCCG] consensusID : consensus_11219#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 577 fasta sequence [TCTTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAGCGCTGCTCATCAACGAGAAGGAACCAGTGACCACAAAAGCAACGTGCAGGAAGATTACGATACAAAACCAAAGATTTTAGATGATGGTCGTGAGGACTACAGTGACATTGTTGAACAGCTCTGACATTAGAACTAGCAACGAGATTAGGATTTTCTTTAGTACTAGACTTGATTTCTCCACGACTGGTGTCCGGCTAAAGTAGTCGATCGATTTAATTAACGTCACATACTTCTACTTCTGAAATCTCCGCGATAAGATCTTCTTGCAACCACGACAGCTTACTTTCCACAGGCACATTCAAGTCTCCAGAAACTGTATCGAAGAGGTTACGGTTGTCGGTAATAAACTTAAGCATTCTGTCTTTTATTCCACCGGCAACAGCGGGACTCACTGAAGACGAAAATCGAGGTAGTAATCTCAAAATTGATGACGCTAGCCTGAAACTTGGACGGAGAGCCATTAAAATGCAAACCACTGGCGCCTGCACGGTAAACAAAGTCAGATCCCTTCAAAGTCACCCGCCGTTCCGTTTCA] [-] EMBL CD078655 [TCTTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAGCGCTGCTCATCAACGAGAAGGAACCAGTGACCACAAAAGCAACGTGCAGGAAGATTACGATACAAAACCAAAGATTTTAGATGATGGTCGTGAGGACTACAGTGACATTGTTGAACAGCTCTGACATTAGAACTAGCAACGAGATTAGGATTTTCTTTAGTACTAGACTTGATTTCTCCACGACTGGTGTCCGGCTAAAGTAGTCGATCGATTTAATTAACGTCACATACTTCTACTTCTGAAATCTCCGCGATAAGATCTTCTTGCAACCACGACAGCTTACTTTCCACAGGCACATTCAAGTCTCCAGAAACTGTATCGAAGAGGTTACGGTTGTCGGTAATAAACTTAAGCATTCTGTCTTTTATTCCACCGGCAACAGCGGGACTCACTGAAGACGAAAATCGAGGTAGTAATCTCAAAATTGATGACGCTAGCCTGAAACTTGGACGGAGAGCCATTAAAATGCAAACCACTGGCGCCTGCACGGTAAACAAAGTCAGATCCCTTCAAAGTCACCCGCCGTTCCGTTTCA] [-] EMBL CD200250 [ ggTTCTACTTCTGAAATCTCCGCGATAAGATCTTCTTGCAACCACGACAGCTTACTTTCCACAGGCACATTCAAGTCTCCAGAAACTGTATCGAAGAGGTTACGGTTGTCGGTAATAAACTTAAGCATTCTGTCTTTTATTCCACCGGCAACAGCGGGACTCACTGAAGACGAAAATCGAGGTAGTAACCTCAAAATTGATGACGCTAGCCTGAAACTTGGACGGAGAGCCATTAAAATGCAAACCACTGGCGCCTGCACGGTAAACAAAGTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11219#0 TACGCAGTACGGTAATGCAGTTGCATGGCATGTTTATTTTTTTTTTTTTTTTTTTTTTAC 60 consensus_11219#1 ------------------------------------------------------------ consensus_11219#2 ------------------------------------------------------------ consensus_11219#0 ACAGTAAAGAACAATTTTAATATTTACTGATTTCAATAACAAGACTATTTGACACTGTTG 120 consensus_11219#1 ----TAAAGACCAATTT-AATATTT-CTGATTTCA-TAACAAGACTATTTGACACTGT-G 52 consensus_11219#2 ------------------------------------------------------------ consensus_11219#0 GCTAATGCTAAACCGACCAAAAGTTATCTACTCTGAAATACAGAAAACCTATTTGTTTTA 180 consensus_11219#1 GNTAATGCTAAAC-GACCAAAAGT-ATCTA-TCTGAA----------------------- 86 consensus_11219#2 ------------------------------------------------------------ consensus_11219#0 GTCCAGCAGCATGTTTTTGCGTATGTTAGCATACACTTCTTTCATTTCCTTCCATTTTAA 240 consensus_11219#1 -----------------TGCGTATGTAGGCATACACTTCTTTCATTTCCTTCCATNTTAN 129 consensus_11219#2 ------------------------------------------------------------ consensus_11219#0 AGCCATATTGTCCATCATTTCATCCGCACCCGGGGACTTCGGTGTCATAGATTTTCCTTC 300 consensus_11219#1 AGCCATATGTCNCATCATNTCATCCGCACCCGGGGACTTCGGTGTCATAGATTTTCCTTC 189 consensus_11219#2 ------------------------------------------------------------ consensus_11219#0 TGCTAAAAGGATGTTTAATTCTTTCTCCAAGATATCAAATCGTTTAAGCAGATCAGCATT 360 consensus_11219#1 TGCTAAAAGGATGTTTAATTCTTTCTCCAAGATATCAAATCGTTTAAGCAGATCAGCATT 249 consensus_11219#2 ------------------------------------------------------------ consensus_11219#0 TTCTGGTTTATCTTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAGCGCTGCTC 420 consensus_11219#1 NTCTGGTTTATCTTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAGCGCTGCTC 309 consensus_11219#2 ----------TCTTTAATTTTATTCCACTTTTTCTCTCGCTCCTCCTCATAGCGCTGCTC 50 ************************************************** consensus_11219#0 ATCAACGAGAAGGAACCAGTGACCACAAAAGCAACGTGCAGGAAGATTACGATACAAAAC 480 consensus_11219#1 ATCAACGAGAAGGAACCAGTGACCACAAAAGCAACGTGCAGGAAGATTACGATACAAAAC 369 consensus_11219#2 ATCAACGAGAAGGAACCAGTGACCACAAAAGCAACGTGCAGGAAGATTACGATACAAAAC 110 ************************************************************ consensus_11219#0 CAAAGATTTTAGATGATGGTCGTGAGGACTACAGTGACATTGTTGAACAGCTCTGACATT 540 consensus_11219#1 CAAAGATTTTAGATGATGGTCGTGAGGACTACAGTGACATTGTTGAACAGCTCTNNNNNN 429 consensus_11219#2 CAAAGATTTTAGATGATGGTCGTGAGGACTACAGTGACATTGTTGAACAGCTCTGACATT 170 ****************************************************** consensus_11219#0 AGAACTAGCAACGAGATTAGGATTTTCTTTAGTACTAGACTTGATTTCTCCACGACTGGT 600 consensus_11219#1 NNNNNNNNNNNCGAGATTAGGATTTTCTTTAGTACTAGACTTGATTTCTCCACGACTGGT 489 consensus_11219#2 AGAACTAGCAACGAGATTAGGATTTTCTTTAGTACTAGACTTGATTTCTCCACGACTGGT 230 ************************************************* consensus_11219#0 GTCCGG------------------------------------TTCTACTTCTGAAATCTC 624 consensus_11219#1 GTCCGG------------------------------------TTCTACTTCTGAAATCTC 513 consensus_11219#2 GTCCGGCTAAAGTAGTCGATCGATTTAATTAACGTCACATACTTCTACTTCTGAAATCTC 290 ****** ****************** consensus_11219#0 CGCGATAAGATCTTCTTGCAACCACGACAGCTTACTTTCCACAGGCACATTCAAGTCTCC 684 consensus_11219#1 CGCGATAAGATGTTCTTGCAACCACGACAGCTTACTTTCCACAGGCACATTCAAGTCTCC 573 consensus_11219#2 CGCGATAAGATCTTCTTGCAACCACGACAGCTTACTTTCCACAGGCACATTCAAGTCTCC 350 *********** ************************************************ consensus_11219#0 AGAAACTGTATCGAAGAGGTTACGGTTGTCGGTAATAAACTTAAGCATTCTGTCTTTTAT 744 consensus_11219#1 AGAA----------------------TGTCGGTAATAAACTTAAGCATTCTGTCTTTTAT 611 consensus_11219#2 AGAAACTGTATCGAAGAGGTTACGGTTGTCGGTAATAAACTTAAGCATTCTGTCTTTTAT 410 **** ********************************** consensus_11219#0 TCCACCGGCAACAGCGGGACTCACTGAAGACGAAAATCGAGGTAGTAATCTCAAAATTGA 804 consensus_11219#1 TCCACCGGCAACAGCGGGACTCACTGAAGACGAAAATCGAGGTAGTAATCTCAAAATTGA 671 consensus_11219#2 TCCACCGGCAACAGCGGGACTCACTGAAGACGAAAATCGAGGTAGTAATCTCAAAATTGA 470 ************************************************************ consensus_11219#0 TGACGCTAGCCTGAAACTTGGACGGAGAGCCATTAAAATGCAAACCACTGGCGCCTGCAC 864 consensus_11219#1 TGACGCTAGCCTGAAACTTGGACGGAGAGCCATTAAAATGCAAACCACTGGCGCCTGCAC 731 consensus_11219#2 TGACGCTAGCCTGAAACTTGGACGGAGAGCCATTAAAATGCAAACCACTGGCGCCTGCAC 530 ************************************************************ consensus_11219#0 GGTAAACAA-GTCAGATCCC--------------------------- 883 consensus_11219#1 GGTAAACAAAGTCAGATCCCTTCAAAGTCACCCGCCGTTCCG----- 773 consensus_11219#2 GGTAAACAAAGTCAGATCCCTTCAAAGTCACCCGCCGTTCCGTTTCA 577 ********* ********** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||