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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1125#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence
[CTCCAGGCCAGAATTTGGCACGAGGATGATAACTGACGATCTTAATCCAGAAGATCATTCAGACCTTTCTCAATCATCTTTCAAACACACCTTAAATCCATATCCTGATTGTAGTGGTAACAACAGTTTGAGTAAACCTTGCACTCGTTTGTCATATAATAATACTAATATGCATCAAATCATCAAAAAAGTTCCCCGTAAAAAGCGTCGCAAGTCTAAACTACACTCTCATTTTAATCGCAATGAAAATTTAAAATCAACCTTACTTTCTATGGAAACAGATATAAGAGGATAATCTCGTGGAAATCAACAATCGATGGTGCGCTTTTCTGCCGATCAATCAGCTTTCGTGAATTCAAATGGAATGCGTATTCAAAAGTCGAAATTGAAAACCTCACAAAACCAACAATCAAAAATAGACGATAATCATATTAAAGAAAAAAGACCATCATCAATAAACATTGTCAATTCCTTTCGCAGCTTACTACAACAATTTTAGTAGATATTTTTTTGTTGTTGATTGTCTTGTGAACTATTTCTCGAAGTAGATCATAACGTTTGTAGATTATAACAGTAACGGTATATTTGATGGTTGATAATGTTCTAAAATTGATTTTGGAATTCGTTTTTTGTAAATAAATAAGGTACATGAATAAAGA]
[+] EMBL CD080187 [CTCCAGGCCAGAATTTGGCACGAGGATGATAACTGACGATCTTAATCCAGAAGATCATTCAGACCTTTCTCAATCATCTTTCAAACACACCTTAAATCCATATCCTGATTGTAGTGGTAACAACAGTTTGAGTAAACCTTGCACTCGTTTGTCATATAATAATACTAATATGCATCAAATCATCAAAAAAGTTCCCCGTAAAAAGCGTCGCAAGTCTAAACTACACTCTCATTTTAATCGCAATGAAAATTTAAAATCAACCTTACTTTCTATGGAAACAGATATAAGAGGATAATCTCGTGGAAATCAACAATCGATGGTGCGCTTTTCTGCCGATCAATCAGCTTTCGTGAATTCAAATGGAATGCGTATTCAAAAGTCGAAATTGAAAACCTCACAAAACCAACAATCAAAAATAGACGATAATCATATTAAAGAAAAAAGACCATCATCAATAAACATTGTCAATTCCTTTCGCAGCTTACTACAACAATTTTAGTAGATATTTTTTTGTTGTTGATTGTCTTGTGAACTATTTCTCGAAGTAGATCATAACGTTTGTAGATTATAACAGTAACGGTATATTTGATGGTTGATAATGTTCTAAAATTGATTTTGGAATTCGTTTTTTGTAAATAAATAAGGTACATGAATAAAGA]
consensusID : consensus_1125#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence
[CGAGAGGTTGGATGGCTCCTGTAAGGAACATTACCTCTTCTCGACATCCTTCTGATCGTTTTTCCAAGAAACACATTTGTAGGGAGGATGGATCAGTATTGGTTGTAAGTAAGAAAATGAAGAACATTATAAAACAAAACCTTGAAGCACAATCCATAACTAATATGATAACCGAAGATCTTAATCCAGAAGATCATTCAGACCTTTCTCAATCATCTTTCAAACACACCTTAAATCCATATCCTGATTGTAGTA]
[+] EMBL CD059248 [CGAGAGGTTGGATGGCTCCTGTAAGGAACATTACCTCTTCTCGACATCCTTCTGATCGTTTTTCCAAGAAACACATTTGTAGGGAGGATGGATCAGTATTGGTTGTAAGTAAGAAAATGAAGAACATTATAAAACAAAACCTTGAAGCACAATCCATAACTAATATGATAACCGAAGATCTTAATCCAGAAGATCATTCAGACCTTTCTCAATCATCTTTCAAACACACCTTAAATCCATATCCTGATTGTAGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1125#0 CTCCAGGCCAGAATTTGGCACGAGGATGATAACTGACGATCTTAATCCAGAAGATCATTC 60
consensus_1125#1 ------------------------------------------------------------
consensus_1125#0 AGACCTTTCTCAATCATCTTTCAAACACACCTTAAATCCATATCCTGATTGTAGTGGTAA 120
consensus_1125#1 ------------------------------------------------------------
consensus_1125#0 CAACAGTTTGAGTAAACCTTGCACTCGTTTGTCATATAATAATACTAATATGCATCAAAT 180
consensus_1125#1 ------------------------------------------------------------
consensus_1125#0 CATCAAAAAAGTTCCCCGTAAAAAGCGTCGCAAGTCTAAACTACACTCTCATTTTAATCG 240
consensus_1125#1 ------------------------------------------------------------
consensus_1125#0 CAATGAAAATTTAAAATCAACCTTACTTTCTATGGAAACAGATATAAGAGGATAATCTCG 300
consensus_1125#1 --------------------CGAGAGGTTGGATGGCTCCTG-TA-AGGAACATTACCTCT 38
* * ** **** * * ** * ** ** * ***
consensus_1125#0 TGGAAATCAACAATCGATGGTGCGCTTTTCTGCCGATCAATCAGCTTTCGTGAATTCAAA 360
consensus_1125#1 TC----TCGACATCCTTCTGATCGTTTTTCCAAGAAACA--CATTTGTAGGGAGGATGGA 92
* ** *** * * ** ***** * ** ** * * * ** *
consensus_1125#0 TGGAATGCGTATTCAAAAGTCGAAATTGAAAACCTCACAAAACCAACAATCAAAA-ATAG 419
consensus_1125#1 TCAGTATTGGTTGTAAGTAAGAAAATGAAGAACATTATAAAACAAAACCTTGAAGCACAA 152
* * * ** **** * *** * * ***** ** * ** * *
consensus_1125#0 ACGATAATCATATTAAAGAAAAAAGACCATCATCAATAAACATTGTCAATTCCTTTCGCA 479
consensus_1125#1 TCCATAACTAATATGATAACCGAAGATCTTAATCCA-GAAGATCATTCAGACCTTTCTCA 211
* **** * * * * **** * * *** * ** ** * * ****** **
consensus_1125#0 G----CTTACTACAACAATTTTAGTAGATATTTTT-TTGTTGTTGATTGTCTTGTGAACT 534
consensus_1125#1 ATCATCTTTCAAACACACCTTAAATCCATATCCTGATTGTAGTA---------------- 255
*** * * *** ** * * **** * **** **
consensus_1125#0 ATTTCTCGAAGTAGATCATAACGTTTGTAGATTATAACAGTAACGGTATATTTGATGGTT 594
consensus_1125#1 ------------------------------------------------------------
consensus_1125#0 GATAATGTTCTAAAATTGATTTTGGAATTCGTTTTTTGTAAATAAATAAGGTACATGAAT 654
consensus_1125#1 ------------------------------------------------------------
consensus_1125#0 AAAGA 659
consensus_1125#1 -----
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||