These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1125#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence [CTCCAGGCCAGAATTTGGCACGAGGATGATAACTGACGATCTTAATCCAGAAGATCATTCAGACCTTTCTCAATCATCTTTCAAACACACCTTAAATCCATATCCTGATTGTAGTGGTAACAACAGTTTGAGTAAACCTTGCACTCGTTTGTCATATAATAATACTAATATGCATCAAATCATCAAAAAAGTTCCCCGTAAAAAGCGTCGCAAGTCTAAACTACACTCTCATTTTAATCGCAATGAAAATTTAAAATCAACCTTACTTTCTATGGAAACAGATATAAGAGGATAATCTCGTGGAAATCAACAATCGATGGTGCGCTTTTCTGCCGATCAATCAGCTTTCGTGAATTCAAATGGAATGCGTATTCAAAAGTCGAAATTGAAAACCTCACAAAACCAACAATCAAAAATAGACGATAATCATATTAAAGAAAAAAGACCATCATCAATAAACATTGTCAATTCCTTTCGCAGCTTACTACAACAATTTTAGTAGATATTTTTTTGTTGTTGATTGTCTTGTGAACTATTTCTCGAAGTAGATCATAACGTTTGTAGATTATAACAGTAACGGTATATTTGATGGTTGATAATGTTCTAAAATTGATTTTGGAATTCGTTTTTTGTAAATAAATAAGGTACATGAATAAAGA] [+] EMBL CD080187 [CTCCAGGCCAGAATTTGGCACGAGGATGATAACTGACGATCTTAATCCAGAAGATCATTCAGACCTTTCTCAATCATCTTTCAAACACACCTTAAATCCATATCCTGATTGTAGTGGTAACAACAGTTTGAGTAAACCTTGCACTCGTTTGTCATATAATAATACTAATATGCATCAAATCATCAAAAAAGTTCCCCGTAAAAAGCGTCGCAAGTCTAAACTACACTCTCATTTTAATCGCAATGAAAATTTAAAATCAACCTTACTTTCTATGGAAACAGATATAAGAGGATAATCTCGTGGAAATCAACAATCGATGGTGCGCTTTTCTGCCGATCAATCAGCTTTCGTGAATTCAAATGGAATGCGTATTCAAAAGTCGAAATTGAAAACCTCACAAAACCAACAATCAAAAATAGACGATAATCATATTAAAGAAAAAAGACCATCATCAATAAACATTGTCAATTCCTTTCGCAGCTTACTACAACAATTTTAGTAGATATTTTTTTGTTGTTGATTGTCTTGTGAACTATTTCTCGAAGTAGATCATAACGTTTGTAGATTATAACAGTAACGGTATATTTGATGGTTGATAATGTTCTAAAATTGATTTTGGAATTCGTTTTTTGTAAATAAATAAGGTACATGAATAAAGA] consensusID : consensus_1125#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence [CGAGAGGTTGGATGGCTCCTGTAAGGAACATTACCTCTTCTCGACATCCTTCTGATCGTTTTTCCAAGAAACACATTTGTAGGGAGGATGGATCAGTATTGGTTGTAAGTAAGAAAATGAAGAACATTATAAAACAAAACCTTGAAGCACAATCCATAACTAATATGATAACCGAAGATCTTAATCCAGAAGATCATTCAGACCTTTCTCAATCATCTTTCAAACACACCTTAAATCCATATCCTGATTGTAGTA] [+] EMBL CD059248 [CGAGAGGTTGGATGGCTCCTGTAAGGAACATTACCTCTTCTCGACATCCTTCTGATCGTTTTTCCAAGAAACACATTTGTAGGGAGGATGGATCAGTATTGGTTGTAAGTAAGAAAATGAAGAACATTATAAAACAAAACCTTGAAGCACAATCCATAACTAATATGATAACCGAAGATCTTAATCCAGAAGATCATTCAGACCTTTCTCAATCATCTTTCAAACACACCTTAAATCCATATCCTGATTGTAGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1125#0 CTCCAGGCCAGAATTTGGCACGAGGATGATAACTGACGATCTTAATCCAGAAGATCATTC 60 consensus_1125#1 ------------------------------------------------------------ consensus_1125#0 AGACCTTTCTCAATCATCTTTCAAACACACCTTAAATCCATATCCTGATTGTAGTGGTAA 120 consensus_1125#1 ------------------------------------------------------------ consensus_1125#0 CAACAGTTTGAGTAAACCTTGCACTCGTTTGTCATATAATAATACTAATATGCATCAAAT 180 consensus_1125#1 ------------------------------------------------------------ consensus_1125#0 CATCAAAAAAGTTCCCCGTAAAAAGCGTCGCAAGTCTAAACTACACTCTCATTTTAATCG 240 consensus_1125#1 ------------------------------------------------------------ consensus_1125#0 CAATGAAAATTTAAAATCAACCTTACTTTCTATGGAAACAGATATAAGAGGATAATCTCG 300 consensus_1125#1 --------------------CGAGAGGTTGGATGGCTCCTG-TA-AGGAACATTACCTCT 38 * * ** **** * * ** * ** ** * *** consensus_1125#0 TGGAAATCAACAATCGATGGTGCGCTTTTCTGCCGATCAATCAGCTTTCGTGAATTCAAA 360 consensus_1125#1 TC----TCGACATCCTTCTGATCGTTTTTCCAAGAAACA--CATTTGTAGGGAGGATGGA 92 * ** *** * * ** ***** * ** ** * * * ** * consensus_1125#0 TGGAATGCGTATTCAAAAGTCGAAATTGAAAACCTCACAAAACCAACAATCAAAA-ATAG 419 consensus_1125#1 TCAGTATTGGTTGTAAGTAAGAAAATGAAGAACATTATAAAACAAAACCTTGAAGCACAA 152 * * * ** **** * *** * * ***** ** * ** * * consensus_1125#0 ACGATAATCATATTAAAGAAAAAAGACCATCATCAATAAACATTGTCAATTCCTTTCGCA 479 consensus_1125#1 TCCATAACTAATATGATAACCGAAGATCTTAATCCA-GAAGATCATTCAGACCTTTCTCA 211 * **** * * * * **** * * *** * ** ** * * ****** ** consensus_1125#0 G----CTTACTACAACAATTTTAGTAGATATTTTT-TTGTTGTTGATTGTCTTGTGAACT 534 consensus_1125#1 ATCATCTTTCAAACACACCTTAAATCCATATCCTGATTGTAGTA---------------- 255 *** * * *** ** * * **** * **** ** consensus_1125#0 ATTTCTCGAAGTAGATCATAACGTTTGTAGATTATAACAGTAACGGTATATTTGATGGTT 594 consensus_1125#1 ------------------------------------------------------------ consensus_1125#0 GATAATGTTCTAAAATTGATTTTGGAATTCGTTTTTTGTAAATAAATAAGGTACATGAAT 654 consensus_1125#1 ------------------------------------------------------------ consensus_1125#0 AAAGA 659 consensus_1125#1 ----- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||