These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11394#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 696 fasta sequence [GATCGTGAGCTCAGTCTCAGAAGTTACAAGTTTCCTGCTATCGAAAATATGGGGTGTACATTGGATCAGTTCGATACCATTGATCTTTCAGATAATGAAATCAGAAAACTCGACGGATTTCCAATGTTGAAACGTCTAAAATCGTTGATACTTACAAACAATAAGATCGCCCGTATCGCCGAGGACTTGGGTCAGCATTTACCCAATCTCTTGACCCTTATCCTAACTAGTAATTACCTTTCTGACCTCAAAGATTTGGATCCTCTATCATCATGTGATAAATTAAATTTTCTAAGTCTTCTTCATTGTCCTGTAACAATGCGAGCAAATTACCGACTATATGTTATCAGCCGCGTCGCATCTCTTCGCTTTTTAGATTATCGTCGTGTTACCCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAAACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTAATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTAGTAATGAACAGATTCACCATGGGG-AAGGCAAAGAAAACAATGCTGCTGCCCTAAATACATCCGTCGAAACCGATCANACTGAATTCAACCAA] [+] EMBL CD199165 [GATCGTGAGCTCAGTCTCAGAAGTTACAAGTTTCCTGCTATCGAAAATATGGGGTGTACATTGGATCAGTTCGATACCATTGATCTTTCAGATAATGAAATCAGAAAACTCGACGGATTTCCAATGTTGAAACGTCTAAAATCGTTGATACTTACAAACAATAAGATCGCCCGTATCGCCGAGGACTTGGGTCAGCATTTACCCAATCTCTTGACCCTTATCCTAACTAGTAATTACCTTTCTGACCTCAAAGATTTGGATCCTCTATCATCATGTGATAAATTAAATTTTCTAAGTCTTCTTCATTGTCCTGTAAC ATGCGAGCAA ] [+] EMBL CD146878 [ ATATGGGGTGTACATTGGATCAGTTCGATACCATTGATCTTTCAGATAATGAAATCAGAAAACTCGACGGATTTCCAATGTTGAAACGTCTAAAATCGTTGATACTTACAAACAATAAGATCGCCCGTATCGCCGAGGACTTGGGTCAGCATTTACCCAATCTCTTGACCCTTATCCTAACTAGTAATTACCTTTCTGACCTCAAAGATTTGGATCCTCTATCATCATGTGATAAATTAAATTTTCTAAGTCTTCTTCATTGTCCTGTAACAATGCGAGCAAATTACCGACTATATGTTATCAGCCGCGTCGCATCTCTTCGCTTTTTAGATTATCGTCGTGTTACCCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAG ] [-] EMBL CD146852 [ TATGGGGTGTACATTGGATCAGTTCGATACCATTGATCTTTCAGATAATGAAATCAGAAAACTCGACGGATTTCCAATGTTGAAACGTCTAAAATCGTTGATACTTACAAACAATAAGATCGCCCGTATCGCCGAGGACTTGGGTCAGCATTTACCCAATCTCTTGACCCTTATCCTAACTAGTAATTACCTTTCTGACCTCAAAGATTTGGATCCTCTATCATCATGTGATAAATTAAATTTTCTAAGTCTTCTTCATTGTCCTGTAACAATGCGAGCAAATTACCGACTATATGTTATCAGCCGCGTCGCATCTCTTCGCCTTTTAGATTATCGTCGTGTTACCCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAAACTCA ] [+] EMBL CD139358 [ TTACCCAATCTCTTGACCCTTATCCTAACTAGTAATTACCTTTCTGACCTCAAAGATTTGGATCCTCTATCATCATGTGATAAATTAAATTTTCTAAGTCTTCTTCATTGTCCTGTAACAATGCGAGCAAATTACCGACTATATGTTATCAGCCGCGTCGCATCTCTTCGCTTTTTAGATTATCGTCGTGTTACCCAAGCTGAACGTAAACTAGCTCGATCAATGTTCAAACGTCTTCCTGCTCTATCAAACAGCGTAAATCATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAAACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTAATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTAGTAAT ] [+] EMBL CD139464 [ ACAGTGCGAGCAAATTACCGACTATATGTTATCAGCCGCGTCGCATCTCTTCGCTTTTTAGATTATCGTCGTGTTACCCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAAACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTAATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTAGTAATGAACAGATTCACCATGGGG AAGGCAAAGAAAACAATGCTGCTGCCCTAAATACATCCGTCG ] [+] EMBL AA559563 [ TAAACTAGCTCGATCAATGTTTAAACGTCTNCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAAACTCAATTCCTGCTGCTGGTGTNGTTAAAACATTTATNCCNGGTGCTCCAATTAATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACNAGATCTAGTATTGAACAGATTCNCCATGGGGAAAGGCAAAGAAAACAATGCTGCTGCCCTAAATACGTCCGTCGAAACCGATCANACTGAATTCAACCAA] consensusID : consensus_11394#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 57 consensus length = 408 fasta sequence [CGCAGGCCAGAATTCGGCACGAGGATTTTCTAAGTCTTCTTCATTGTCCTGTAACAATGCGAGCAAATTACCGACTATATGTTATCAGCCGGGTCGCATCTCTTCGCTTTTTAGATTA-TCGTCGTGTTAC-CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA-ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA-ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA-GTAATGAACAGATTCACCAT-GGGGAAGGCAAAGAAAACAATGCTGC-GACCCGNGCTGTGNNNNNNN] [+] EMBL CD078217 [CGCAGGCCAGAATTCGGCACGAGGATTTTCTAAGTCTTCTTCATTGTCCTGTAACAATGCGAGCAAATTACCGACTATATGTTATCAGCCGCGTCGCATCTCTTCGCTTTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCATTTCCTGCT ] [-] EMBL CD070665 [ CGGGTCGCATCTCTTCGCTTTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAGA ] [-] EMBL CD070683 [ GGGTCGCATCTCTTCGCTTTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAGA ] [+] EMBL CD096621 [ CTCTTCGC TTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCG NCAATG TTAAACGTCTTCCTGCTCTATCAAACAGCGCAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAG ] [-] EMBL CD199373 [ CTTCGCTTCTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAGA ] [+] EMBL CD070675 [ TTTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCCTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GNGGAAGGCAAAGAAAACAATGCTGC GACCCGNGCTGTG ] [+] EMBL CD199452 [ TTTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAGAAAACAATGCTGC GACCCG ] [+] EMBL CD070620 [ TTTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT NGGGAAGGCAAAGAAAACAATGCTGC GACCC ] [+] EMBL CD199434 [ TTTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCGACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAGAAAACAATGCTGC GACCC ] [+] EMBL CD199341 [ TTTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCANATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCATNGGGGAAGGCAAAGAAAAC ATGCTGC GACCC ] [+] EMBL CD147202 [ TTTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAG ] [+] EMBL CD147083 [ TTTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAACGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAG ] [+] EMBL CD199362 [ TTTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAG ] [+] EMBL CD070614 [ TTTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAG ] [+] EMBL CD070654 [ TTTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTANATAATCTAAAAGCACCATATCAGANAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTANATTC AATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAG ] [+] EMBL CD199363 [ TTTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATGGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGnncaa ] [+] EMBL CD070694 [ TTTTTAGATTA TCGTCGTGCTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTANATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGCTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GNGGAAGGCAAAG ] [+] EMBL CD070686 [ TTTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GNGGAAGGCAAAa ] [+] EMBL CD096567 [ TTTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA GCTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAG ] [+] EMBL CD199343 [ TTTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCTT GGGGAAGGCAAAG ] [+] EMBL CD096523 [ TTTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAGACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAC GGGGAAGGCAAAG ] [+] EMBL CD096512 [ TTTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAG ] [+] EMBL CD096587 [ TTTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAG ] [+] EMBL CD096607 [ TTTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAG ] [+] EMBL CD096628 [ TTTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAG ] [+] EMBL CD096634 [ TTTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAG ] [+] EMBL CD147040 [ TTTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAG ] [+] EMBL CD147079 [ TTTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAG ] [+] EMBL CD199443 [ TTTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAGTTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCT GTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT NGGGAAGGCAAAG ] [+] EMBL CD199438 [ TTTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGGCTTCCTGCTCTATCAAACAGCGTACATAATCTAAAAGCACCATATCAGATAGCGAATTCTAATCGTATAGAAC ACTCAATTCCTGCTGCTGACGATGTTAAAACATTTATTCCT GTGCTCGAATTA ATTCATATCATCTTCTCCCTCCTGGTACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGCGAAGGCAAAG ] [+] EMBL CD147091 [ TTTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCGTATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCT CTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAG ] [+] EMBL CD199395 [ TTTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGANAGCGAATTCTAATCGTATAGAAN ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAA ] [+] EMBL CD096527 [ TTTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGGAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAGAAAACAATGCTGCGGACCCGGGCTGNNNNNNNNN] [+] EMBL CD147102 [ TTTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCT ] [+] EMBL CD199428 [ TTTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCGGATAGCGAATTCTAATCGTATAGAAAGACTC ATTCCTGCTGC ] [-] EMBL CD199400 [ TTTTAGATTA TCGTCGTGTTAC CCAAGCTGAGCGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCATCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAGA ] [-] EMBL CD070603 [ TTTTAGATTA TCGTCGTGTTAC NCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAATCGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAGA ] [-] EMBL CD147052 [ TTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAGA ] [-] EMBL CD147063 [ TTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAGA ] [-] EMBL CD096599 [ TTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCCGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAGA ] [-] EMBL CD147159 [ TTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAGA ] [-] EMBL CD147199 [ TTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAGA ] [-] EMBL CD147229 [ TTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGGAGGCAAAGA ] [-] EMBL CD199357 [ TTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTNTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATACAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAGA ] [-] EMBL CD070706 [ TTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAGA ] [-] EMBL CD199328 [ TTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAGA ] [-] EMBL CD070646 [ TTTTAGATTA TCGTCGTG TACNCCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAGA ] [-] EMBL CD070679 [ TTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAATATTTATTCCTGGTGCACCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAGA ] [-] EMBL CD199399 [ TTTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCGGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAACCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAGA ] [-] EMBL CD199356 [ TTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAGA ] [-] EMBL CD199444 [ TTTAGATTA TCGTCGTGTGAC ACAAGCTGAACGTAGACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAGA ] [-] EMBL CD070663 [ TTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAGCGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAGA ] [-] EMBL CD199406 [ TTTAGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAGA ] [-] EMBL CD070591 [ TTTAGATTANTCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTAGATCAATGTNTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAGA ] [-] EMBL CD199332 [ AGATTA TCGTCGTGTTAC CCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCGCCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAGA ] [-] EMBL CD199355 [ TCGTGTTAC CCAAGCTGANCGTAAACTAGCTCGATCAATGTTNAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAACATTTATTCCTGGTGCTCCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTA GTAATGAACAGATTCACCAT GGGGAAGGCAAAGA ] [-] EMBL CD200328 [ ATGTTTAAACGTCTTCCGGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCGAATTCTAATCGTATAGAAA ACTCAATTCCTGCTGCTGGTGTTGTTAAAATATTTATTCCTGGTGCACCAATTA ATTCAAATAATCTTCTCCCTCCTGGAACTGAGCCAACAAGATCTAGGTAATGAACAGATTCACCAT GGGGAAGGC ] consensusID : consensus_11394#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence [TGCTATCGAAAATATGGGGTGTACATTGGATCAGTTCGATACCATTGATCTTTCAGATAATGAAATCAGAAAACTCGACGGATCTCCAATGTTGAAACGCCTAAAATCGTTGATACTTACAAACAATAAGCTTCGCTTTTTAGATTATCGTCGTGTTACCCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTCCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCCAATTCTAATCGTATAGAAAACTCAATTCCTGCTGCTGGTGTTGTTAAA] [+] EMBL CD092843 [TGCTATCGAAAATATGGGGTGTACATTGGATCAGTTCGATACCATTGATCTTTCAGATAATGAAATCAGAAAACTCGACGGATCTCCAATGTTGAAACGCCTAAAATCGTTGATACTTACAAACAATAAGCTTCGCTTTTTAGATTATCGTCGTGTTACCCAAGCTGAACGTAAACTAGCTCGATCAATGTTTAAACGTCTCCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCACCATATCAGAAAGCCAATTCTAATCGTATAGAAAACTCAATTCCTGCTGCTGGTGTTGTTAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11394#0 GATCGTGAGCTCAGTCTCAGAAGTTACAAGTTTCCTGCTATCGAAAATATGGGGTGTACA 60 consensus_11394#1 ------------------------------------------------------------ consensus_11394#2 ------------------------------------------------------------ consensus_11394#0 TTGGATCAGTTCGATACCATTGATCTTTCAGATAATGAAATCAGAAAACTCGACGGATTT 120 consensus_11394#1 ------------------------------------------------------------ consensus_11394#2 ------------------------------------------------------------ consensus_11394#0 CCAATGTTGAAACGTCTAAAATCGTTGATACTTACAAACAATAAGATCGCCCGTATCGCC 180 consensus_11394#1 ------------------------------------------------------------ consensus_11394#2 ------------------------------------------------------------ consensus_11394#0 GAGGACTTGGGTCAGCATTTACCCAATCTCTTGACCCTTATCCTAACTAGTAATTACCTT 240 consensus_11394#1 ------------------------------------------------------------ consensus_11394#2 ------------------------------------------------------------ consensus_11394#0 TCTGACCTCAAAGATTTGGATCCTCTATCATC---ATGTGATAAATTAAATTTTCTAAGT 297 consensus_11394#1 ---------------------CGCAGGCCAGA---ATTCGGCACGA-GGATTTTCTAAGT 35 consensus_11394#2 --TGCTATCGAAAATATGGGGTGTACATTGGATCAGTTCGATACCATTGATCTTTCAGAT 58 * * * ** ** * * consensus_11394#0 CTTC---TTCATTGTCCTGTAACAATGCGAGCAAATTACCGACTATA--TGTTATCAGCC 352 consensus_11394#1 CTTC---TTCATTGTCCTGTAACAATGCGAGCAAATTACCGACTATA--TGTTATCAGCC 90 consensus_11394#2 AATGAAATCAGAAAACTCGACGGATCTCCAATGTTGAAACGCCTAAAATCGTTGATACTT 118 * * * * * * * * ** *** * *** * consensus_11394#0 GCGTCGCATCT-CTTCGCTTTTTAGATTATCGTCGTGTTACCCAAGCTGAACGTAAACTA 411 consensus_11394#1 GGGTCGCATCT-CTTCGCTTTTTAGATTATCGTCGTGTTACCCAAGCTGAACGTAAACTA 149 consensus_11394#2 ACAAACAATAAGCTTCGCTTTTTAGATTATCGTCGTGTTACCCAAGCTGAACGTAAACTA 178 ** ************************************************ consensus_11394#0 GCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCA 471 consensus_11394#1 GCTCGATCAATGTTTAAACGTCTTCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCA 209 consensus_11394#2 GCTCGATCAATGTTTAAACGTCTCCCTGCTCTATCAAACAGCGTAAATAATCTAAAAGCA 238 *********************** ************************************ consensus_11394#0 CCATATCAGAAAGCGAATTCTAATCGTATAGAAAACTCAATTCCTGCTGCTGGTGTTGTT 531 consensus_11394#1 CCATATCAGAAAGCGAATTCTAATCGTATAGAAAACTCAATTCCTGCTGCTGGTGTTGTT 269 consensus_11394#2 CCATATCAGAAAGCCAATTCTAATCGTATAGAAAACTCAATTCCTGCTGCTGGTGTTGTT 298 ************** ********************************************* consensus_11394#0 AAAACATTTATTCCTGGTGCTCCAATTAATTCAAATAATCTTCTCCCTCCTGGAACTGAG 591 consensus_11394#1 AAAACATTTATTCCTGGTGCTCCAATTAATTCAAATAATCTTCTCCCTCCTGGAACTGAG 329 consensus_11394#2 AAA--------------------------------------------------------- 301 *** consensus_11394#0 CCAACAAGATCTAGTAATGAACAGATTCACCATGGGGAAGGCAAAGAAAACAATGCTGCT 651 consensus_11394#1 CCAACAAGATCTAGTAATGAACAGATTCACCATGGGGAAGGCAAAGAAAACAATGCTGCG 389 consensus_11394#2 ------------------------------------------------------------ consensus_11394#0 GCCCTAAATACATCCGTCGAAACCGATCANACTGAATTCAACCAA 696 consensus_11394#1 ACCCGNGCTGTGNNNNNNN-------------------------- 408 consensus_11394#2 --------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||