These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_120#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 386 fasta sequence [AAGTATATATGAAGAACTTCAATAGGAGGACCATCTCGTCCTTATTGAAAAATATCAGGACAGGGAGTTACCTTGATATCAACCTATTGTTACTTTATTACCTTGAAACACACTCTATCCAAATTTGAGATGATCCACGTTCATTGAAAACCACACCTTTTATCTTAGAAATTATACACTTTTCAGTCAATCAAGAGACGTATCTGATTTATCTAGTCCATGAGGCTGATGAAATTGAACACCAACGAATAAAAATACTATCACATTGATTAATTCAAGTAAATCTAATTTCCCAACTTTGGAGAAGCTGTAATACAAAATTTCGGGGAAATGCAACAAAAACTTCAAAACCTCAACTTGTTTTGGGGATTAAGGCATCGTCATAT] [+] EMBL CD155903 [AAGTATATATGAAGAACTTCAATAGGAGGACCATCTCGTCCTTATTGAAAAATATCAGGACAGGGAGTTACCTTGATATCAACCTATTGTTACTTTATTACCTTGAAACACACTCTATCCAAATTTGAGATGATCCACGTTCATTGAAAACCACACCTTTTATCTTAGAAATTATACACTTTTCAGTCAATCAAGAGACGTATCTGATTTATCTAGTCCATGAGGCTGATGAAATTGAACACCAACGAATAAAAATACTATCACATTGATTAATTCAAGTAAATCTAATTTCCCAACTTTGGAGAAGCTGTAATACAAAATTTCGGGGAAATGCAACAAAAACTTCAAAACCTCAACTTGTTTTGGGGATTAAGGCATCGTCATAT] consensusID : consensus_120#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 328 fasta sequence [AGTATATATGAAGAACTTCAATAGGAGGACCATCTCGTCCTTATTGAAAAATATCAGGACAGGGAGTTACCCTGAAACACACTCTATCCAAATTTGAGATAATCCACGTTCATTTAAAACCACACCTTTTATCTTAGAAATTATACACTTTTCAGTCAATCAAGAGACGTATCTGATTTATCTAGTCCATGAGGCTGATGAAATTGAACACCAACGAATAAAAATACTATCACATTGATTAATTCAAGTAAATCTAATTTCCCAACTTTGGAGAAGCTGTAATACAAAATTTTGGGGAAATGCAACAAAAACTTCAAAACCTCAACTT] [-] EMBL CD156064 [AGTATATATGAAGAACTTCAATAGGAGGACCATCTCGTCCTTATTGAAAAATATCAGGACAGGGAGTTACCCTGAAACACACTCTATCCAAATTTGAGATAATCCACGTTCATTTAAAACCACACCTTTTATCTTAGAAATTATACACTTTTCAGTCAATCAAGAGACGTATCTGATTTATCTAGTCCATGAGGCTGATGAAATTGAACACCAACGAATAAAAATACTATCACATTGATTAATTCAAGTAAATCTAATTTCCCAACTTTGGAGAAGCTGTAATACAAAATTTTGGGGAAATGCAACAAAAACTTCAAAACCTCAACTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_120#0 AAGTATATATGAAGAACTTCAATAGGAGGACCATCTCGTCCTTATTGAAAAATATCAGGA 60 consensus_120#1 -AGTATATATGAAGAACTTCAATAGGAGGACCATCTCGTCCTTATTGAAAAATATCAGGA 59 *********************************************************** consensus_120#0 CAGGGAGTTACCTTGATATCAACCTATTGTTACTTTATTACCTTGAAACACACTCTATCC 120 consensus_120#1 CAGGGAGTTACCCTGA------------------------------AACACACTCTATCC 89 ************ *** ************** consensus_120#0 AAATTTGAGATGATCCACGTTCATTGAAAACCACACCTTTTATCTTAGAAATTATACACT 180 consensus_120#1 AAATTTGAGATAATCCACGTTCATTTAAAACCACACCTTTTATCTTAGAAATTATACACT 149 *********** ************* ********************************** consensus_120#0 TTTCAGTCAATCAAGAGACGTATCTGATTTATCTAGTCCATGAGGCTGATGAAATTGAAC 240 consensus_120#1 TTTCAGTCAATCAAGAGACGTATCTGATTTATCTAGTCCATGAGGCTGATGAAATTGAAC 209 ************************************************************ consensus_120#0 ACCAACGAATAAAAATACTATCACATTGATTAATTCAAGTAAATCTAATTTCCCAACTTT 300 consensus_120#1 ACCAACGAATAAAAATACTATCACATTGATTAATTCAAGTAAATCTAATTTCCCAACTTT 269 ************************************************************ consensus_120#0 GGAGAAGCTGTAATACAAAATTTCGGGGAAATGCAACAAAAACTTCAAAACCTCAACTTG 360 consensus_120#1 GGAGAAGCTGTAATACAAAATTTTGGGGAAATGCAACAAAAACTTCAAAACCTCAACTT- 328 *********************** *********************************** consensus_120#0 TTTTGGGGATTAAGGCATCGTCATAT 386 consensus_120#1 -------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||