cluster # 1203

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Schistosoma mansoni
cluster # 1203 cluster # 1203 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1203#0 length = 405 sequences # 1

consensus_1203#1 length = 344 sequences # 1

consensusID : consensus_1203#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 405
fasta sequence

                              [GTGTTTACTAATTGAATTTTCAATAATCAGTTTGTTTGTTTATTGTTTAAATAATAAAGAGGGGGGGGTAGTGAGATAAAATACCGTCTGAACAAATGATCCATTATTATTATTATTATTACTATGTATTATACATAACTTTTTGATTTCTTTCTCATTAGTTTTTATCTTTTGAACTGTTTTGCTTTGCTCCCCCCACACATACATCTCATAGTTCATTTTACTATGAATGTATTCGAAAGTGATTGTTGTAATCACACTATTAAACCTAACCATGTTTACTATTTACATAGGGTTGTCAACCTTTCCAAATGACTCTTTTTTATTTGATTCTATGTATGTTTACACCAATTGGTTACACTGATTATATTCTTTCTTCCTTTCTTTTGTTATTGTTGTTAGTGT]

[+] EMBL CD140847             [GTGTTTACTAATTGAATTTTCAATAATCAGTTTGTTTGTTTATTGTTTAAATAATAAAGAGGGGGGGGTAGTGAGATAAAATACCGTCTGAACAAATGATCCATTATTATTATTATTATTACTATGTATTATACATAACTTTTTGATTTCTTTCTCATTAGTTTTTATCTTTTGAACTGTTTTGCTTTGCTCCCCCCACACATACATCTCATAGTTCATTTTACTATGAATGTATTCGAAAGTGATTGTTGTAATCACACTATTAAACCTAACCATGTTTACTATTTACATAGGGTTGTCAACCTTTCCAAATGACTCTTTTTTATTTGATTCTATGTATGTTTACACCAATTGGTTACACTGATTATATTCTTTCTTCCTTTCTTTTGTTATTGTTGTTAGTGT]




>consensus_1203#0
GTGTTTACTAATTGAATTTTCAATAATCAGTTTGTTTGTTTATTGTTTAAATAATAAAGA
GGGGGGGGTAGTGAGATAAAATACCGTCTGAACAAATGATCCATTATTATTATTATTATT
ACTATGTATTATACATAACTTTTTGATTTCTTTCTCATTAGTTTTTATCTTTTGAACTGT
TTTGCTTTGCTCCCCCCACACATACATCTCATAGTTCATTTTACTATGAATGTATTCGAA
AGTGATTGTTGTAATCACACTATTAAACCTAACCATGTTTACTATTTACATAGGGTTGTC
AACCTTTCCAAATGACTCTTTTTTATTTGATTCTATGTATGTTTACACCAATTGGTTACA
CTGATTATATTCTTTCTTCCTTTCTTTTGTTATTGTTGTTAGTGT

consensusID : consensus_1203#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 344
fasta sequence

                              [AGGTATTATACACCACCCTTTTGAGGCCTTTCCCCATTAGGGTTTTACCCTTTTGAAGCTGTTTTACTTTGCGCCCCCAACACATACATCTCATAGAGCATTTTACTATGAATTTATTCGAAAGTGATTGTTGTAACCACACTATTAAACCTAACCATGTTTACTATTTACATAGGGTTGTCAACCTTTCCAAATGACCCCTTTTTTATTTGAATCTATGTATGTTTACACCAATTGGTTACACTGATTATATTCTTTCTTCCTCTCCTTTTGTTATTGTTGTTAGTGTGCCTTGATACATGAACCAAAATGATATACCCTTGTTTACAATAAATAAAATGAAA]

[-] EMBL SMAA28910            [AGGTATTATACACCACCCTTTTGAGGCCTTTCCCCATTAGGGTTTTACCCTTTTGAAGCTGTTTTACTTTGCGCCCCCAACACATACATCTCATAGAGCATTTTACTATGAATTTATTCGAAAGTGATTGTTGTAACCACACTATTAAACCTAACCATGTTTACTATTTACATAGGGTTGTCAACCTTTCCAAATGACCCCTTTTTTATTTGAATCTATGTATGTTTACACCAATTGGTTACACTGATTATATTCTTTCTTCCTCTCCTTTTGTTATTGTTGTTAGTGTGCCTTGATACATGAACCAAAATGATATACCCTTGTTTACAATAAATAAAATGAAA]




>consensus_1203#1
AGGTATTATACACCACCCTTTTGAGGCCTTTCCCCATTAGGGTTTTACCCTTTTGAAGCT
GTTTTACTTTGCGCCCCCAACACATACATCTCATAGAGCATTTTACTATGAATTTATTCG
AAAGTGATTGTTGTAACCACACTATTAAACCTAACCATGTTTACTATTTACATAGGGTTG
TCAACCTTTCCAAATGACCCCTTTTTTATTTGAATCTATGTATGTTTACACCAATTGGTT
ACACTGATTATATTCTTTCTTCCTCTCCTTTTGTTATTGTTGTTAGTGTGCCTTGATACA
TGAACCAAAATGATATACCCTTGTTTACAATAAATAAAATGAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1203#0      GTGTTTACTAATTGAATTTTCAATAATCAGTTTGTTTGTTTATTGTTTAAATAATAAAGA 60
consensus_1203#1      ------------------------------------------------------------
                                                                                  

consensus_1203#0      GGGGGGGGTAGTGAGATAAAATACCGTCTGAACAAATGATCCATTATTATTATTATTATT 120
consensus_1203#1      ------------------------------------------------------------
                                                                                  

consensus_1203#0      ACTATGTATTATACATAACT-TTTTGATTTCTTTCTC-ATTAG--TTTTTATCTTTTGAA 176
consensus_1203#1      ---AGGTATTATACACCACCCTTTTGAGGCCTTTCCCCATTAGGGTTTTACCCTTTTGAA 57
                         * **********  **  ******   ***** * *****  ****   ********

consensus_1203#0      -CTGTTTTGCTTTGCTCCCCCCACACATACATCTCATAGTTCATTTTACTATGAATGTAT 235
consensus_1203#1      GCTGTTTTACTTTGCGCCCCCAACACATACATCTCATAGAGCATTTTACTATGAATTTAT 117
                       ******* ****** ***** *****************  *************** ***

consensus_1203#0      TCGAAAGTGATTGTTGTAATCACACTATTAAACCTAACCATGTTTACTATTTACATAGGG 295
consensus_1203#1      TCGAAAGTGATTGTTGTAACCACACTATTAAACCTAACCATGTTTACTATTTACATAGGG 177
                      ******************* ****************************************

consensus_1203#0      TTGTCAACCTTTCCAAATGACTC-TTTTTTATTTGATTCTATGTATGTTTACACCAATTG 354
consensus_1203#1      TTGTCAACCTTTCCAAATGACCCCTTTTTTATTTGAATCTATGTATGTTTACACCAATTG 237
                      ********************* * ************ ***********************

consensus_1203#0      GTTACACTGATTATATTCTTTCTTCCTTTC-TTTTGTTATTGTTGTTAGTGT-------- 405
consensus_1203#1      GTTACACTGATTATATTCTTTCTTCCTCTCCTTTTGTTATTGTTGTTAGTGTGCCTTGAT 297
                      *************************** ** *********************        

consensus_1203#0      -----------------------------------------------
consensus_1203#1      ACATGAACCAAAATGATATACCCTTGTTTACAATAAATAAAATGAAA 344