cluster # 1215

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Schistosoma mansoni
cluster # 1215 cluster # 1215 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1215#0 length = 640 sequences # 1

consensus_1215#1 length = 460 sequences # 1

consensusID : consensus_1215#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 640
fasta sequence

                              [TGGAAGGGATACTAAAGGGGAAGATATGCATGAATATCAAAATCAAACAGAGACTAATTTAGAACGTGTACAACGAAAAATGGCAATATTATTAAATGATAAAATGGGTAAAATATTAGAAGGAAATCTAATAAAATTAGCTCGTTATGATGTGAATACTTTACTTTCATCAGTACTTTCACTAACTAAACCTACGGATGAAATTGGCAAAGCATATGTCGAGTTTCTTCGCGTCAATTTAGAACAAATGCGTCAAAAAGTCTCTGATGAACTGTATATTTTGTCAATTATGGAAACATGGTATATGACACAAACACGGATGATCAATGATTGGCTTATTGAACGTAAAGGAAATGCTTTAAGTCCTTATCAGTTCACATGTCTTTCTACCATTATTAAAAAAATGTATTCCGATTTTGAACTTCAAGGTATAAGCCCAGATGCATTGGATACAATGGCTTACAAAACAATTATGCAAAGACTTCAAATGGAAGAAACTGCTCAGGCTGTTCGACCTGATTTAGGAAGTAGTCCAACACGATCGATACTTGGCACAATAACAGGCAGTCTAAGTGGTATTCCAAAACCTGGATTCCTTAGTAAAAATGTACATTTATAAGAGACANNNACACANAGCACT]

[+] EMBL CD160708             [TGGAAGGGATACTAAAGGGGAAGATATGCATGAATATCAAAATCAAACAGAGACTAATTTAGAACGTGTACAACGAAAAATGGCAATATTATTAAATGATAAAATGGGTAAAATATTAGAAGGAAATCTAATAAAATTAGCTCGTTATGATGTGAATACTTTACTTTCATCAGTACTTTCACTAACTAAACCTACGGATGAAATTGGCAAAGCATATGTCGAGTTTCTTCGCGTCAATTTAGAACAAATGCGTCAAAAAGTCTCTGATGAACTGTATATTTTGTCAATTATGGAAACATGGTATATGACACAAACACGGATGATCAATGATTGGCTTATTGAACGTAAAGGAAATGCTTTAAGTCCTTATCAGTTCACATGTCTTTCTACCATTATTAAAAAAATGTATTCCGATTTTGAACTTCAAGGTATAAGCCCAGATGCATTGGATACAATGGCTTACAAAACAATTATGCAAAGACTTCAAATGGAAGAAACTGCTCAGGCTGTTCGACCTGATTTAGGAAGTAGTCCAACACGATCGATACTTGGCACAATAACAGGCAGTCTAAGTGGTATTCCAAAACCTGGATTCCTTAGTAAAAATGTACATTTATAAGAGACANNNACACANAGCACT]




>consensus_1215#0
TGGAAGGGATACTAAAGGGGAAGATATGCATGAATATCAAAATCAAACAGAGACTAATTT
AGAACGTGTACAACGAAAAATGGCAATATTATTAAATGATAAAATGGGTAAAATATTAGA
AGGAAATCTAATAAAATTAGCTCGTTATGATGTGAATACTTTACTTTCATCAGTACTTTC
ACTAACTAAACCTACGGATGAAATTGGCAAAGCATATGTCGAGTTTCTTCGCGTCAATTT
AGAACAAATGCGTCAAAAAGTCTCTGATGAACTGTATATTTTGTCAATTATGGAAACATG
GTATATGACACAAACACGGATGATCAATGATTGGCTTATTGAACGTAAAGGAAATGCTTT
AAGTCCTTATCAGTTCACATGTCTTTCTACCATTATTAAAAAAATGTATTCCGATTTTGA
ACTTCAAGGTATAAGCCCAGATGCATTGGATACAATGGCTTACAAAACAATTATGCAAAG
ACTTCAAATGGAAGAAACTGCTCAGGCTGTTCGACCTGATTTAGGAAGTAGTCCAACACG
ATCGATACTTGGCACAATAACAGGCAGTCTAAGTGGTATTCCAAAACCTGGATTCCTTAG
TAAAAATGTACATTTATAAGAGACANNNACACANAGCACT

consensusID : consensus_1215#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 460
fasta sequence

                              [AGTGGTATTCCAAAACCTGGATTCCTTAGTAAAATGTAACATTTATAAGAGACAAAACAACAAAGCACTGTCAACTCGTCCTTCAATTCACATACACATATATAGGAGTTGTATGTTAATCTTCATAGACTGCTGTGAATTGTTCTTTTCCTGTCTTTTATTTCCTTATATTTTGGCCAACTATTTATAGCTATTTCCATACAAAATGAGAAAATAAGCTCGACATAGATAATTTTTTTGCCATCCTATACATTGAAAAAAATCTTTGGAAAATATTTTGTCTTAAGGATTTATTAGAAAAACAAAAAATTAAACCCTTCTAGTTCTTTGACTAACAATCAGTGAATTGTCAATGTGTACTTGATTGTTGGCTAATAAAATAAAACAGTAATTTTTGTCAGGAAACAAAAGAGTAGTAGGATTTAATGAATTCAGAAATATCAACAGAACTGTCGAAAGT]

[+] EMBL CD201066             [AGTGGTATTCCAAAACCTGGATTCCTTAGTAAAATGTAACATTTATAAGAGACAAAACAACAAAGCACTGTCAACTCGTCCTTCAATTCACATACACATATATAGGAGTTGTATGTTAATCTTCATAGACTGCTGTGAATTGTTCTTTTCCTGTCTTTTATTTCCTTATATTTTGGCCAACTATTTATAGCTATTTCCATACAAAATGAGAAAATAAGCTCGACATAGATAATTTTTTTGCCATCCTATACATTGAAAAAAATCTTTGGAAAATATTTTGTCTTAAGGATTTATTAGAAAAACAAAAAATTAAACCCTTCTAGTTCTTTGACTAACAATCAGTGAATTGTCAATGTGTACTTGATTGTTGGCTAATAAAATAAAACAGTAATTTTTGTCAGGAAACAAAAGAGTAGTAGGATTTAATGAATTCAGAAATATCAACAGAACTGTCGAAAGT]




>consensus_1215#1
AGTGGTATTCCAAAACCTGGATTCCTTAGTAAAATGTAACATTTATAAGAGACAAAACAA
CAAAGCACTGTCAACTCGTCCTTCAATTCACATACACATATATAGGAGTTGTATGTTAAT
CTTCATAGACTGCTGTGAATTGTTCTTTTCCTGTCTTTTATTTCCTTATATTTTGGCCAA
CTATTTATAGCTATTTCCATACAAAATGAGAAAATAAGCTCGACATAGATAATTTTTTTG
CCATCCTATACATTGAAAAAAATCTTTGGAAAATATTTTGTCTTAAGGATTTATTAGAAA
AACAAAAAATTAAACCCTTCTAGTTCTTTGACTAACAATCAGTGAATTGTCAATGTGTAC
TTGATTGTTGGCTAATAAAATAAAACAGTAATTTTTGTCAGGAAACAAAAGAGTAGTAGG
ATTTAATGAATTCAGAAATATCAACAGAACTGTCGAAAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1215#0      TGGAAGGGATACTAAAGGGGAAGATATGCATGAATATCAAAATCAAACAGAGACTAATTT 60
consensus_1215#1      ------------------------------------------------------------
                                                                                  

consensus_1215#0      AGAACGTGTACAACGAAAAATGGCAATATTATTAAATGATAAAATGGGTAAAATATTAGA 120
consensus_1215#1      --AGTG-GTATTCCAAAACCTGGATTCCTTAGTAAAATGTAACATTTATAAGAGAC---A 54
                        *  * ***   * ***  ***     *** ****   *** **   *** * *    *

consensus_1215#0      AGGAAATCTAATAAAATTAGCTCGTTATGATGTGAATACTTTACTTTCATCAGTACTTTC 180
consensus_1215#1      AAACAACAAAGCACTGTCAACTCGTCCTTCAATTCACA-TACACATATATAGGAGTTGT- 112
                      *   **   *  *   * * *****  *    *  * * *  ** *  **  *   * * 

consensus_1215#0      ACTAACTAAACCTACGGATGAAATTGGCAAAGCATATGTCGAGTTTCTTCGCGTCAATTT 240
consensus_1215#1      ---ATGTTAATCTTC--ATAGACT--GCTGTGAAT-TGT----TCTTTTCCTGTCTTTT- 159
                         *  * ** ** *  **  * *  **   * ** ***    * * ***  ***  ** 

consensus_1215#0      AGAACAAATGCGTCAAAAAGTCTCTGATGAACTGTATATTTTGTCAATTATGGAAACATG 300
consensus_1215#1      ------ATTTCCTTATA----TTTTGGCCAACTATTTATAGCTATTTCCATACAAAATGA 209
                            * * * * * *     * **   **** * ***          **  ***    

consensus_1215#0      GTATATGACACAAACACGGATGATCAATGATTGGCTTATTGAACGTAAAGGAAATGCTTT 360
consensus_1215#1      GAAAATAAGCTCGACATAGATAATT--TTTTTGCCATCCTATACATTGAAAAAAATCTTT 267
                      * * ** *     ***  *** **   *  *** * *  *  ** *  *  ***  ****

consensus_1215#0      AAGTCCTTATCAGTTCACATGTCTTTCTACCATTATTAAAAA--AATGTATTCCGATT-- 416
consensus_1215#1      GGAAAATATTTTGTCTTAAGGATTTATTAGAAAAACAAAAAATTAAACCCTTCTAGTTCT 327
                            *  *  **    * *  **  **  *  *  *****  **    ***   **  

consensus_1215#0      TTGAACTTCAAGGTATAA---GCCCAGATGCATTGGATACAATGGCTTACAAAACAATTA 473
consensus_1215#1      TTGACTAACAATCAGTGAATTGTCAATGTGTACTTGAT-TGTTGGCTAATAAAATAAAAC 386
                      ****    ***    * *   * * *  ** * * ***    ***** * **** **   

consensus_1215#0      TGCAAAGACTTCAAATGGAAGAAACTGCTCAGGCTGTTCGACCTGATTTAGGAAGTAGTC 533
consensus_1215#1      AGTAA--TTTTTGTCAGGAAACAAAAGAGTAGTAGGATTTAATGAATTCAGAAATATCAA 444
                       * **    **     ****  **  *   **   * *  *    *** ** **      

consensus_1215#0      CAACACGATCGATACTTGGCACAATAACAGGCAGTCTAAGTGGTATTCCAAAACCTGGAT 593
consensus_1215#1      CAGAACTGTCGAAAGT-------------------------------------------- 460
                      **  **  **** * *                                            

consensus_1215#0      TCCTTAGTAAAAATGTACATTTATAAGAGACANNNACACANAGCACT 640
consensus_1215#1      -----------------------------------------------