These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1248#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence [GACCTCTATCAGTTATCCCTTAGGCACTGTGGTCACGCTCTCAGGTTACTAAGATCACCTGAAATCCAATTTCCTTTTCAGTTACCTCTAGAAGAACCATTTTACGGTGTGAGAAGCCGCCTTACCTCTAACACCATTCAAGATCACTGTATTCATAATCAATCTCAAGTTTTACATTATGTAAATTAGGTTTATGATTTATTGAATGGTGCTGTATAAGAACTCACTTATTAGATTTACAGAAACTTGTTAAGCGTTTTCTTCATTTTAACAATAAAATTCCTTAAATTCAAAGAAGTTGCCTTCTCTTTTCATATTTAGTTTAAACAATATTCATAGTAAATTCAAATTAAGATTCAGTGAATATGAAACATTATATAAACGAGGTATTCAAAACACGGCAACTTACGAAATGTGCCTAAACCTAGTCACAACCTATCTTAAACACTTCATTAGAAGTGCTCAAGAAAAATAAGAATATATTTGTAAAATCTCAGCGAATGAATTGGATGTAAATCCAACATTTCGTCTGGTAATCTGGTCCTTGAAAAAGCTTGGATCAGATTACCAGATTACAAATATATTCT] [+] EMBL CD160922 [GACCTCTATCAGTTATCCCTTAGGCACTGTGGTCACGCTCTCAGGTTACTAAGATCACCTGAAATCCAATTTCCTTTTCAGTTACCTCTAGAAGAACCATTTTACGGTGTGAGAAGCCGCCTTACCTCTAACACCATTCAAGATCACTGTATTCATAATCAATCTCAAGTTTTACATTATGTAAATTAGGTTTATGATTTATTGAATGGTGCTGTATAAGAACTCACTTATTAGATTTACAGAAACTTGTTAAGCGTTTTCTTCATTTTAACAATAAAATTCCTTAAATTCAAAGAAGTTGCCTTCTCTTTTCATATTTAGTTTAAACAATATTCATAGTAAATTCAAATTAAGATTCAGTGAATATGAAACATTATATAAACGAGGTATTCAAAACACGGCAACTTACGAAATGTGCCTAAACCTAGTCACAACCTATCTTAAACACTTCATTAGAAGTGCTCAAGAAAAATAAGAATATATTTGTAAAATCTCAGCGAATGAATTGGATGTAAATCCAACATTTCGTCTGGTAATCTGGTCCTTGAAAAAGCTTGGATCAGATTACCAGATTACAAATATATTCT] consensusID : consensus_1248#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 542 fasta sequence [GTACACTCTATCAGATGTCCATTGTGAACTGGGTGTACACTCTACTCCATGATACGTAAGATACACCTAGCATATCCAATATACCTTTATTAATCCTATCGCTCATATAGAAAACACATTGATAGCGAGTCCACGAAGATATCTGCCTTTGACACTCTAACACGCACTTCACAGATACACCTGATATTGCATAAGCCAATGCTTACAATGTACATTATGCACATGCATTGCTGATGACCTATTGAACGAGGCTGAATAAGAACTCACTCATTAAATCTACAGAAACTTGTTAAGCATCTTCTTCATTTTAACAATAACATTCCTTAAATTCAAAGAAGTTGCCTACTCTTTTAATATTTAGGTCAAACAATATTCATAGTAAATTGCAAATTAAGATTCAATGAATATGAAACATTATATAAACGACGTATTCAAAACACGGCAACTTACAAAATGTGCCTAAACCTACTCACAACCTATCTTAAACACTTCATTAGAAGTGCTCAAGACAAATAACAATATATTTGTTAAATCTCAGCGAA] [+] EMBL CD161385 [GTACACTCTATCAGATGTCCATTGTGAACTGGGTGTACACTCTACTCCATGATACGTAAGATACACCTAGCATATCCAATATACCTTTATTAATCCTATCGCTCATATAGAAAACACATTGATAGCGAGTCCACGAAGATATCTGCCTTTGACACTCTAACACGCACTTCACAGATACACCTGATATTGCATAAGCCAATGCTTACAATGTACATTATGCACATGCATTGCTGATGACCTATTGAACGAGGCTGAATAAGAACTCACTCATTAAATCTACAGAAACTTGTTAAGCATCTTCTTCATTTTAACAATAACATTCCTTAAATTCAAAGAAGTTGCCTACTCTTTTAATATTTAGGTCAAACAATATTCATAGTAAATTGCAAATTAAGATTCAATGAATATGAAACATTATATAAACGACGTATTCAAAACACGGCAACTTACAAAATGTGCCTAAACCTACTCACAACCTATCTTAAACACTTCATTAGAAGTGCTCAAGACAAATAACAATATATTTGTTAAATCTCAGCGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1248#0 --GACCTCTATCAGTTATCCCTTAGGCACTGTGGTCACGCTCT----CAGGTTAC-TAAG 53 consensus_1248#1 GTACACTCTATCAGATGTCCATTGTGAACTGGGTGTACACTCTACTCCATGATACGTAAG 60 ********* * *** ** * **** * ** **** ** * *** **** consensus_1248#0 AT-CACCTG--AAATCCAATTTCCTTTT-------CAGTTACCTCTAGAAGAACCATTTT 103 consensus_1248#1 ATACACCTAGCATATCCAATATACCTTTATTAATCCTATCGCTCATATAGAAAACACATT 120 ** ***** * ******* * * *** * * * ** * ** ** ** consensus_1248#0 AC-----GGTGTGAGAAG----CCGCCTT--AC-CTCTAACAC-CA-TTCA-AGAT-CAC 147 consensus_1248#1 GATAGCGAGTCCACGAAGATATCTGCCTTTGACACTCTAACACGCACTTCACAGATACAC 180 ** **** * ***** ** ********* ** **** **** *** consensus_1248#0 T--GTATT-CATAA-TCAAT-CTCAAGTTTTACATTATGTAAATTAG--GTTTATGATTT 200 consensus_1248#1 CTGATATTGCATAAGCCAATGCTTACAATGTACATTATGCACATGCATTGCTGATGACCT 240 **** ***** **** ** * * ********* * ** * * **** * consensus_1248#0 ATTGAATGGTGCTGTATAAGAACTCACTTATTAGATTTACAGAAACTTGTTAAGCGTTTT 260 consensus_1248#1 ATTGAACGAGGCTGAATAAGAACTCACTCATTAAATCTACAGAAACTTGTTAAGCATCTT 300 ****** * **** ************* **** ** ****************** * ** consensus_1248#0 CTTCATTTTAACAATAAAATTCCTTAAATTCAAAGAAGTTGCCTTCTCTTTTCATATTTA 320 consensus_1248#1 CTTCATTTTAACAATAACATTCCTTAAATTCAAAGAAGTTGCCTACTCTTTTAATATTTA 360 ***************** ************************** ******* ******* consensus_1248#0 GTTTAAACAATATTCATAGTAAATT-CAAATTAAGATTCAGTGAATATGAAACATTATAT 379 consensus_1248#1 GGTCAAACAATATTCATAGTAAATTGCAAATTAAGATTCAATGAATATGAAACATTATAT 420 * * ********************* ************** ******************* consensus_1248#0 AAACGAGGTATTCAAAACACGGCAACTTACGAAATGTGCCTAAACCTAGTCACAACCTAT 439 consensus_1248#1 AAACGACGTATTCAAAACACGGCAACTTACAAAATGTGCCTAAACCTACTCACAACCTAT 480 ****** *********************** ***************** *********** consensus_1248#0 CTTAAACACTTCATTAGAAGTGCTCAAGAAAAATAAGAATATATTTGTAAAATCTCAGCG 499 consensus_1248#1 CTTAAACACTTCATTAGAAGTGCTCAAGACAAATAACAATATATTTGTTAAATCTCAGCG 540 ***************************** ****** *********** *********** consensus_1248#0 AATGAATTGGATGTAAATCCAACATTTCGTCTGGTAATCTGGTCCTTGAAAAAGCTTGGA 559 consensus_1248#1 AA---------------------------------------------------------- 542 ** consensus_1248#0 TCAGATTACCAGATTACAAATATATTCT 587 consensus_1248#1 ---------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||