These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_127#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence [TTTTTTTTTTTTTTNNGNCCTCCCANTGACTCTTTTTTTTTCAAATACATTTACAAGTGAATTAATAAATATATAATTTGTATTTATTAAATGTAATGTATAAATAGGGTTATGTTATTACCATTATTATTATTATTATTACTATAACAGTTCACTTGTATAAACAGTTCATATTACTTTAATATAAACATCATTTTTCATGTTGTTTGCATTTGTATTTTATTCACCTATGTTTACCAATATCACTGTTCGTTTTCTTCATCTTCCCCGTCGTCTTCGCCATGTTGTGGTATACTTTGTGGCTCCTCTGGATGTGGTGTTGGCTGTGGTTTGTACCTATTTCCATATTTTTTACACTTTCCTTTTCCCCCCTTCCTTTCGTTCCTTTCGTCCCTTTGGGTTCCTTTCGTCCCTTTCCTGGGATAATTTTGTTTTGCTTGATACCCCTTTGGTTTGACAGGGT] [+] EMBL AI395640 [TTTTTTTTTTTTTTNNGNCCTCCCANTGACTCTTTTTTTTTCAAATACATTTACAAGTGAATTAATAAATATATAATTTGTATTTATTAAATGTAATGTATAAATAGGGTTATGTTATTACCATTATTATTATTATTATTACTATAACAGTTCACTTGTATAAACAGTTCATATTACTTTAATATAAACATCATTTTTCATGTTGTTTGCATTTGTATTTTATTCACCTATGTTTACCAATATCACTGTTCGTTTTCTTCATCTTCCCCGTCGTCTTCGCCATGTTGTGGTATACTTTGTGGCTCCTCTGGATGTGGTGTTGGCTGTGGTTTGTACCTATTTCCATATTTTTTACACTTTCCTTTTCCCCCCTTCCTTTCGTTCCTTTCGTCCCTTTGGGTTCCTTTCGTCCCTTTCCTGGGATAATTTTGTTTTGCTTGATACCCCTTTGGTTTGACAGGGT] consensusID : consensus_127#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 199 fasta sequence [TATGCCTATAGTAGTCGAAGTTGTAATGAATAACAAGATGTAAATAGTAGAAATCTTTGATGATGTCAATTTTATTGATCTATGGTTTTACTTGGGTTTGCTTTTAAAGGTAGGCCTTTTGCTCAGCAGTTTATTAGTTTGCTTCTTTTATAGTAGTCTTTGGTATTTATCTTTTCTTTACTTATACTTTTATTATTTC] [+] EMBL AA917149 [TATGCCTATAGTAGTCGAAGTTGTAATGAATAACAAGATGTAAATAGTAGAAATCTTTGATGATGTCAATTTTATTGATCTATGGTTTTACTTGGGTTTGCTTTTAAAGGTAGGCCTTTTGCTCAGCAGTTTATTAGTTTGCTTCTTTTATAGTAGTCTTTGGTATTTATCTTTTCTTTACTTATACTTTTATTATTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_127#0 TTTTTTTTTTTTTTNNGNCCTCCCANTGACTCTTTTTTTTTCAAATACATTTACAAGTGA 60 consensus_127#1 ------------------------------------------------------------ consensus_127#0 ATTAATAAATATATAATTTGTATTTATTAAATGTAATGTATAAATAGGGTTATGTTATTA 120 consensus_127#1 ------------------------------------------------------------ consensus_127#0 CCATTATTATTATTATTATTACTATAACAGTTCACTTGTATAAACAGTTCATATTACTTT 180 consensus_127#1 ----------------TATGCCTATAGTAGTCGA--AGTTGTAATGAATAACAAGATGTA 42 *** ***** *** * ** ** * * * * * consensus_127#0 AATA-TAAACATCATTTTTCATGTTGTTTGCATTTGTATTTTATTC-ACCTATGTTTACC 238 consensus_127#1 AATAGTAGAAATCTTTGATGATGTCAATTTTATTGATCTATGGTTTTACTTGGGTTTGCT 102 **** ** * *** ** * **** ** *** * * * ** ** * **** * consensus_127#0 AATATCACTGTTCGTTTTCTTCATCTTCCCCGTCGTCTTCGCCATGTTGTGGTATACTTT 298 consensus_127#1 TTTAAAGGTAGGCCTTTTGCTCAGCAGTTTATTAGTTTGCTTCTT-TTATAGTAGTCTTT 161 ** * * **** *** * * ** * * * * ** * *** **** consensus_127#0 GTGGCTCCTCTGGATGTGGTGTTGGCTGTGGTTTGTACCTATTTCCATATTTTTTACACT 358 consensus_127#1 GGTATTTATCT-----TTTCTTTACTTATACTTT-TAT-TATTTC--------------- 199 * * *** * ** * * *** ** ****** consensus_127#0 TTCCTTTTCCCCCCTTCCTTTCGTTCCTTTCGTCCCTTTGGGTTCCTTTCGTCCCTTTCC 418 consensus_127#1 ------------------------------------------------------------ consensus_127#0 TGGGATAATTTTGTTTTGCTTGATACCCCTTTGGTTTGACAGGGT 463 consensus_127#1 --------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||