cluster # 1295

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Schistosoma mansoni
cluster # 1295 cluster # 1295 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1295#0 length = 559 sequences # 1

consensus_1295#1 length = 516 sequences # 1

consensusID : consensus_1295#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 559
fasta sequence

                              [TAGCCCTCAAAGATCTGTGGCTCATAGACAGCATGGTGGATCTTCTGGGAAAAAACAAAGATTGGCTAGCGAGTTTGGAAAGACAACCATTTTTGCTTCCCCTAACTGTATATACTTTGCTCCGGCTTATTCCAGATCATCATTTATCTCCTCAACAGGCTCCATTAGTCACTTCAAATCCATCTGTTCATCTATCCAAGTTACGACAGAAGGAATTGGCTCTGGTTGAAGAGCTTGTTCGGAAGAATTTTGATCGTTGCGCTCAAATTGGCCGTGATTTCATTCGTCTCTTACATGGCGTCGCACGTCTGGAACCGATGAAGCGTTTGTGGGATGATATACTACAAAACATTTCTTCTTTATCGTCTCATTTTTCAAGTCTTACTGAAATTTTGGAAATCACCACACCCCAATGTTTTACACAAACCCTCATACCACATGAAATGGAACAATGGGTTCGTTGGATGATGAAAAATGTTCATTGTGTTCCGAGAGTTCCTGTTCATCGTTATCAAGATTTTTTCCAAAGAAAATTCTTTTCAACTCCAGAAAGTCAGAG]

[+] EMBL CD060167             [TAGCCCTCAAAGATCTGTGGCTCATAGACAGCATGGTGGATCTTCTGGGAAAAAACAAAGATTGGCTAGCGAGTTTGGAAAGACAACCATTTTTGCTTCCCCTAACTGTATATACTTTGCTCCGGCTTATTCCAGATCATCATTTATCTCCTCAACAGGCTCCATTAGTCACTTCAAATCCATCTGTTCATCTATCCAAGTTACGACAGAAGGAATTGGCTCTGGTTGAAGAGCTTGTTCGGAAGAATTTTGATCGTTGCGCTCAAATTGGCCGTGATTTCATTCGTCTCTTACATGGCGTCGCACGTCTGGAACCGATGAAGCGTTTGTGGGATGATATACTACAAAACATTTCTTCTTTATCGTCTCATTTTTCAAGTCTTACTGAAATTTTGGAAATCACCACACCCCAATGTTTTACACAAACCCTCATACCACATGAAATGGAACAATGGGTTCGTTGGATGATGAAAAATGTTCATTGTGTTCCGAGAGTTCCTGTTCATCGTTATCAAGATTTTTTCCAAAGAAAATTCTTTTCAACTCCAGAAAGTCAGAG]




>consensus_1295#0
TAGCCCTCAAAGATCTGTGGCTCATAGACAGCATGGTGGATCTTCTGGGAAAAAACAAAG
ATTGGCTAGCGAGTTTGGAAAGACAACCATTTTTGCTTCCCCTAACTGTATATACTTTGC
TCCGGCTTATTCCAGATCATCATTTATCTCCTCAACAGGCTCCATTAGTCACTTCAAATC
CATCTGTTCATCTATCCAAGTTACGACAGAAGGAATTGGCTCTGGTTGAAGAGCTTGTTC
GGAAGAATTTTGATCGTTGCGCTCAAATTGGCCGTGATTTCATTCGTCTCTTACATGGCG
TCGCACGTCTGGAACCGATGAAGCGTTTGTGGGATGATATACTACAAAACATTTCTTCTT
TATCGTCTCATTTTTCAAGTCTTACTGAAATTTTGGAAATCACCACACCCCAATGTTTTA
CACAAACCCTCATACCACATGAAATGGAACAATGGGTTCGTTGGATGATGAAAAATGTTC
ATTGTGTTCCGAGAGTTCCTGTTCATCGTTATCAAGATTTTTTCCAAAGAAAATTCTTTT
CAACTCCAGAAAGTCAGAG

consensusID : consensus_1295#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 516
fasta sequence

                              [GGTAGATCTTCTGGAAAAAAACAGGTAATTCAGTTATACTCATGAGTTATGTTCACTAGAGATTGGCTAGTGAGTTTGGAAAGACAACCATTTTTGCTTCCCCTGACTGTATATACTTTGCTCCGGCTTATTCCAGATCATCATTTATCTCCTCAACAGGCTCCATTAGTCACTTCAAATCCATCTGTTCATCTATCCAAGTTACGACAGAAAGAATTGGCTTTGGTTGAAGAGCTTGTTCGGAAGAATTTTGATCGTTGCGCTCAAATTGGCCGTGATTTCATTCGCCTCTTACATGGCGTCGCACATCTGGAACCGATGAAGCGTTTGTGGGATGATATACTACAAAACATTTCTTCTTTATCGTCTCATTTTTCAAGTCTTACTGAAATTTTGGAAATCACCACACCCCAATGTTTTACACAAACCCTCATACCACGTGAAATGGAACAATGGGTTCGTTGGATGATGAAAAATGTTCATTGTGTTCCGACAGTTCCTGTTCATCGTTATCAA]

[+] EMBL CD114097             [GGTAGATCTTCTGGAAAAAAACAGGTAATTCAGTTATACTCATGAGTTATGTTCACTAGAGATTGGCTAGTGAGTTTGGAAAGACAACCATTTTTGCTTCCCCTGACTGTATATACTTTGCTCCGGCTTATTCCAGATCATCATTTATCTCCTCAACAGGCTCCATTAGTCACTTCAAATCCATCTGTTCATCTATCCAAGTTACGACAGAAAGAATTGGCTTTGGTTGAAGAGCTTGTTCGGAAGAATTTTGATCGTTGCGCTCAAATTGGCCGTGATTTCATTCGCCTCTTACATGGCGTCGCACATCTGGAACCGATGAAGCGTTTGTGGGATGATATACTACAAAACATTTCTTCTTTATCGTCTCATTTTTCAAGTCTTACTGAAATTTTGGAAATCACCACACCCCAATGTTTTACACAAACCCTCATACCACGTGAAATGGAACAATGGGTTCGTTGGATGATGAAAAATGTTCATTGTGTTCCGACAGTTCCTGTTCATCGTTATCAA]




>consensus_1295#1
GGTAGATCTTCTGGAAAAAAACAGGTAATTCAGTTATACTCATGAGTTATGTTCACTAGA
GATTGGCTAGTGAGTTTGGAAAGACAACCATTTTTGCTTCCCCTGACTGTATATACTTTG
CTCCGGCTTATTCCAGATCATCATTTATCTCCTCAACAGGCTCCATTAGTCACTTCAAAT
CCATCTGTTCATCTATCCAAGTTACGACAGAAAGAATTGGCTTTGGTTGAAGAGCTTGTT
CGGAAGAATTTTGATCGTTGCGCTCAAATTGGCCGTGATTTCATTCGCCTCTTACATGGC
GTCGCACATCTGGAACCGATGAAGCGTTTGTGGGATGATATACTACAAAACATTTCTTCT
TTATCGTCTCATTTTTCAAGTCTTACTGAAATTTTGGAAATCACCACACCCCAATGTTTT
ACACAAACCCTCATACCACGTGAAATGGAACAATGGGTTCGTTGGATGATGAAAAATGTT
CATTGTGTTCCGACAGTTCCTGTTCATCGTTATCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1295#0      --TAGCCCTCAAAGATCTGTGGCTCATAGACAGCATGGTGGATCTTCTGGGAAAA----A 54
consensus_1295#1      GGTAGATCTTCTGGA-----AAAAAACAGGTAATTCAGTTATACTCATGAGTTATGTTCA 55
                        ***  **    **          * **  *     **    **  ** *  *     *

consensus_1295#0      ACAAAGATTGGCTAGCGAGTTTGGAAAGACAACCATTTTTGCTTCCCCTAACTGTATATA 114
consensus_1295#1      CTAGAGATTGGCTAGTGAGTTTGGAAAGACAACCATTTTTGCTTCCCCTGACTGTATATA 115
                        * *********** ********************************* **********

consensus_1295#0      CTTTGCTCCGGCTTATTCCAGATCATCATTTATCTCCTCAACAGGCTCCATTAGTCACTT 174
consensus_1295#1      CTTTGCTCCGGCTTATTCCAGATCATCATTTATCTCCTCAACAGGCTCCATTAGTCACTT 175
                      ************************************************************

consensus_1295#0      CAAATCCATCTGTTCATCTATCCAAGTTACGACAGAAGGAATTGGCTCTGGTTGAAGAGC 234
consensus_1295#1      CAAATCCATCTGTTCATCTATCCAAGTTACGACAGAAAGAATTGGCTTTGGTTGAAGAGC 235
                      ************************************* ********* ************

consensus_1295#0      TTGTTCGGAAGAATTTTGATCGTTGCGCTCAAATTGGCCGTGATTTCATTCGTCTCTTAC 294
consensus_1295#1      TTGTTCGGAAGAATTTTGATCGTTGCGCTCAAATTGGCCGTGATTTCATTCGCCTCTTAC 295
                      **************************************************** *******

consensus_1295#0      ATGGCGTCGCACGTCTGGAACCGATGAAGCGTTTGTGGGATGATATACTACAAAACATTT 354
consensus_1295#1      ATGGCGTCGCACATCTGGAACCGATGAAGCGTTTGTGGGATGATATACTACAAAACATTT 355
                      ************ ***********************************************

consensus_1295#0      CTTCTTTATCGTCTCATTTTTCAAGTCTTACTGAAATTTTGGAAATCACCACACCCCAAT 414
consensus_1295#1      CTTCTTTATCGTCTCATTTTTCAAGTCTTACTGAAATTTTGGAAATCACCACACCCCAAT 415
                      ************************************************************

consensus_1295#0      GTTTTACACAAACCCTCATACCACATGAAATGGAACAATGGGTTCGTTGGATGATGAAAA 474
consensus_1295#1      GTTTTACACAAACCCTCATACCACGTGAAATGGAACAATGGGTTCGTTGGATGATGAAAA 475
                      ************************ ***********************************

consensus_1295#0      ATGTTCATTGTGTTCCGAGAGTTCCTGTTCATCGTTATCAAGATTTTTTCCAAAGAAAAT 534
consensus_1295#1      ATGTTCATTGTGTTCCGACAGTTCCTGTTCATCGTTATCAA------------------- 516
                      ****************** **********************                   

consensus_1295#0      TCTTTTCAACTCCAGAAAGTCAGAG 559
consensus_1295#1      -------------------------