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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 1295 cluster # 1295       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1295#0 length = 559 sequences # 1  
consensus_1295#1 length = 516 sequences # 1  

consensusID : consensus_1295#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 559
fasta sequence
                              [TAGCCCTCAAAGATCTGTGGCTCATAGACAGCATGGTGGATCTTCTGGGAAAAAACAAAGATTGGCTAGCGAGTTTGGAAAGACAACCATTTTTGCTTCCCCTAACTGTATATACTTTGCTCCGGCTTATTCCAGATCATCATTTATCTCCTCAACAGGCTCCATTAGTCACTTCAAATCCATCTGTTCATCTATCCAAGTTACGACAGAAGGAATTGGCTCTGGTTGAAGAGCTTGTTCGGAAGAATTTTGATCGTTGCGCTCAAATTGGCCGTGATTTCATTCGTCTCTTACATGGCGTCGCACGTCTGGAACCGATGAAGCGTTTGTGGGATGATATACTACAAAACATTTCTTCTTTATCGTCTCATTTTTCAAGTCTTACTGAAATTTTGGAAATCACCACACCCCAATGTTTTACACAAACCCTCATACCACATGAAATGGAACAATGGGTTCGTTGGATGATGAAAAATGTTCATTGTGTTCCGAGAGTTCCTGTTCATCGTTATCAAGATTTTTTCCAAAGAAAATTCTTTTCAACTCCAGAAAGTCAGAG]

[+] EMBL CD060167             [TAGCCCTCAAAGATCTGTGGCTCATAGACAGCATGGTGGATCTTCTGGGAAAAAACAAAGATTGGCTAGCGAGTTTGGAAAGACAACCATTTTTGCTTCCCCTAACTGTATATACTTTGCTCCGGCTTATTCCAGATCATCATTTATCTCCTCAACAGGCTCCATTAGTCACTTCAAATCCATCTGTTCATCTATCCAAGTTACGACAGAAGGAATTGGCTCTGGTTGAAGAGCTTGTTCGGAAGAATTTTGATCGTTGCGCTCAAATTGGCCGTGATTTCATTCGTCTCTTACATGGCGTCGCACGTCTGGAACCGATGAAGCGTTTGTGGGATGATATACTACAAAACATTTCTTCTTTATCGTCTCATTTTTCAAGTCTTACTGAAATTTTGGAAATCACCACACCCCAATGTTTTACACAAACCCTCATACCACATGAAATGGAACAATGGGTTCGTTGGATGATGAAAAATGTTCATTGTGTTCCGAGAGTTCCTGTTCATCGTTATCAAGATTTTTTCCAAAGAAAATTCTTTTCAACTCCAGAAAGTCAGAG]


>consensus_1295#0 TAGCCCTCAAAGATCTGTGGCTCATAGACAGCATGGTGGATCTTCTGGGAAAAAACAAAG ATTGGCTAGCGAGTTTGGAAAGACAACCATTTTTGCTTCCCCTAACTGTATATACTTTGC TCCGGCTTATTCCAGATCATCATTTATCTCCTCAACAGGCTCCATTAGTCACTTCAAATC CATCTGTTCATCTATCCAAGTTACGACAGAAGGAATTGGCTCTGGTTGAAGAGCTTGTTC GGAAGAATTTTGATCGTTGCGCTCAAATTGGCCGTGATTTCATTCGTCTCTTACATGGCG TCGCACGTCTGGAACCGATGAAGCGTTTGTGGGATGATATACTACAAAACATTTCTTCTT TATCGTCTCATTTTTCAAGTCTTACTGAAATTTTGGAAATCACCACACCCCAATGTTTTA CACAAACCCTCATACCACATGAAATGGAACAATGGGTTCGTTGGATGATGAAAAATGTTC ATTGTGTTCCGAGAGTTCCTGTTCATCGTTATCAAGATTTTTTCCAAAGAAAATTCTTTT CAACTCCAGAAAGTCAGAG



consensusID : consensus_1295#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 516
fasta sequence
                              [GGTAGATCTTCTGGAAAAAAACAGGTAATTCAGTTATACTCATGAGTTATGTTCACTAGAGATTGGCTAGTGAGTTTGGAAAGACAACCATTTTTGCTTCCCCTGACTGTATATACTTTGCTCCGGCTTATTCCAGATCATCATTTATCTCCTCAACAGGCTCCATTAGTCACTTCAAATCCATCTGTTCATCTATCCAAGTTACGACAGAAAGAATTGGCTTTGGTTGAAGAGCTTGTTCGGAAGAATTTTGATCGTTGCGCTCAAATTGGCCGTGATTTCATTCGCCTCTTACATGGCGTCGCACATCTGGAACCGATGAAGCGTTTGTGGGATGATATACTACAAAACATTTCTTCTTTATCGTCTCATTTTTCAAGTCTTACTGAAATTTTGGAAATCACCACACCCCAATGTTTTACACAAACCCTCATACCACGTGAAATGGAACAATGGGTTCGTTGGATGATGAAAAATGTTCATTGTGTTCCGACAGTTCCTGTTCATCGTTATCAA]

[+] EMBL CD114097             [GGTAGATCTTCTGGAAAAAAACAGGTAATTCAGTTATACTCATGAGTTATGTTCACTAGAGATTGGCTAGTGAGTTTGGAAAGACAACCATTTTTGCTTCCCCTGACTGTATATACTTTGCTCCGGCTTATTCCAGATCATCATTTATCTCCTCAACAGGCTCCATTAGTCACTTCAAATCCATCTGTTCATCTATCCAAGTTACGACAGAAAGAATTGGCTTTGGTTGAAGAGCTTGTTCGGAAGAATTTTGATCGTTGCGCTCAAATTGGCCGTGATTTCATTCGCCTCTTACATGGCGTCGCACATCTGGAACCGATGAAGCGTTTGTGGGATGATATACTACAAAACATTTCTTCTTTATCGTCTCATTTTTCAAGTCTTACTGAAATTTTGGAAATCACCACACCCCAATGTTTTACACAAACCCTCATACCACGTGAAATGGAACAATGGGTTCGTTGGATGATGAAAAATGTTCATTGTGTTCCGACAGTTCCTGTTCATCGTTATCAA]


>consensus_1295#1 GGTAGATCTTCTGGAAAAAAACAGGTAATTCAGTTATACTCATGAGTTATGTTCACTAGA GATTGGCTAGTGAGTTTGGAAAGACAACCATTTTTGCTTCCCCTGACTGTATATACTTTG CTCCGGCTTATTCCAGATCATCATTTATCTCCTCAACAGGCTCCATTAGTCACTTCAAAT CCATCTGTTCATCTATCCAAGTTACGACAGAAAGAATTGGCTTTGGTTGAAGAGCTTGTT CGGAAGAATTTTGATCGTTGCGCTCAAATTGGCCGTGATTTCATTCGCCTCTTACATGGC GTCGCACATCTGGAACCGATGAAGCGTTTGTGGGATGATATACTACAAAACATTTCTTCT TTATCGTCTCATTTTTCAAGTCTTACTGAAATTTTGGAAATCACCACACCCCAATGTTTT ACACAAACCCTCATACCACGTGAAATGGAACAATGGGTTCGTTGGATGATGAAAAATGTT CATTGTGTTCCGACAGTTCCTGTTCATCGTTATCAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1295#0      --TAGCCCTCAAAGATCTGTGGCTCATAGACAGCATGGTGGATCTTCTGGGAAAA----A 54
consensus_1295#1      GGTAGATCTTCTGGA-----AAAAAACAGGTAATTCAGTTATACTCATGAGTTATGTTCA 55
                        ***  **    **          * **  *     **    **  ** *  *     *

consensus_1295#0      ACAAAGATTGGCTAGCGAGTTTGGAAAGACAACCATTTTTGCTTCCCCTAACTGTATATA 114
consensus_1295#1      CTAGAGATTGGCTAGTGAGTTTGGAAAGACAACCATTTTTGCTTCCCCTGACTGTATATA 115
                        * *********** ********************************* **********

consensus_1295#0      CTTTGCTCCGGCTTATTCCAGATCATCATTTATCTCCTCAACAGGCTCCATTAGTCACTT 174
consensus_1295#1      CTTTGCTCCGGCTTATTCCAGATCATCATTTATCTCCTCAACAGGCTCCATTAGTCACTT 175
                      ************************************************************

consensus_1295#0      CAAATCCATCTGTTCATCTATCCAAGTTACGACAGAAGGAATTGGCTCTGGTTGAAGAGC 234
consensus_1295#1      CAAATCCATCTGTTCATCTATCCAAGTTACGACAGAAAGAATTGGCTTTGGTTGAAGAGC 235
                      ************************************* ********* ************

consensus_1295#0      TTGTTCGGAAGAATTTTGATCGTTGCGCTCAAATTGGCCGTGATTTCATTCGTCTCTTAC 294
consensus_1295#1      TTGTTCGGAAGAATTTTGATCGTTGCGCTCAAATTGGCCGTGATTTCATTCGCCTCTTAC 295
                      **************************************************** *******

consensus_1295#0      ATGGCGTCGCACGTCTGGAACCGATGAAGCGTTTGTGGGATGATATACTACAAAACATTT 354
consensus_1295#1      ATGGCGTCGCACATCTGGAACCGATGAAGCGTTTGTGGGATGATATACTACAAAACATTT 355
                      ************ ***********************************************

consensus_1295#0      CTTCTTTATCGTCTCATTTTTCAAGTCTTACTGAAATTTTGGAAATCACCACACCCCAAT 414
consensus_1295#1      CTTCTTTATCGTCTCATTTTTCAAGTCTTACTGAAATTTTGGAAATCACCACACCCCAAT 415
                      ************************************************************

consensus_1295#0      GTTTTACACAAACCCTCATACCACATGAAATGGAACAATGGGTTCGTTGGATGATGAAAA 474
consensus_1295#1      GTTTTACACAAACCCTCATACCACGTGAAATGGAACAATGGGTTCGTTGGATGATGAAAA 475
                      ************************ ***********************************

consensus_1295#0      ATGTTCATTGTGTTCCGAGAGTTCCTGTTCATCGTTATCAAGATTTTTTCCAAAGAAAAT 534
consensus_1295#1      ATGTTCATTGTGTTCCGACAGTTCCTGTTCATCGTTATCAA------------------- 516
                      ****************** **********************                   

consensus_1295#0      TCTTTTCAACTCCAGAAAGTCAGAG 559
consensus_1295#1      -------------------------
                                               




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)