These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1295#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 559 fasta sequence [TAGCCCTCAAAGATCTGTGGCTCATAGACAGCATGGTGGATCTTCTGGGAAAAAACAAAGATTGGCTAGCGAGTTTGGAAAGACAACCATTTTTGCTTCCCCTAACTGTATATACTTTGCTCCGGCTTATTCCAGATCATCATTTATCTCCTCAACAGGCTCCATTAGTCACTTCAAATCCATCTGTTCATCTATCCAAGTTACGACAGAAGGAATTGGCTCTGGTTGAAGAGCTTGTTCGGAAGAATTTTGATCGTTGCGCTCAAATTGGCCGTGATTTCATTCGTCTCTTACATGGCGTCGCACGTCTGGAACCGATGAAGCGTTTGTGGGATGATATACTACAAAACATTTCTTCTTTATCGTCTCATTTTTCAAGTCTTACTGAAATTTTGGAAATCACCACACCCCAATGTTTTACACAAACCCTCATACCACATGAAATGGAACAATGGGTTCGTTGGATGATGAAAAATGTTCATTGTGTTCCGAGAGTTCCTGTTCATCGTTATCAAGATTTTTTCCAAAGAAAATTCTTTTCAACTCCAGAAAGTCAGAG] [+] EMBL CD060167 [TAGCCCTCAAAGATCTGTGGCTCATAGACAGCATGGTGGATCTTCTGGGAAAAAACAAAGATTGGCTAGCGAGTTTGGAAAGACAACCATTTTTGCTTCCCCTAACTGTATATACTTTGCTCCGGCTTATTCCAGATCATCATTTATCTCCTCAACAGGCTCCATTAGTCACTTCAAATCCATCTGTTCATCTATCCAAGTTACGACAGAAGGAATTGGCTCTGGTTGAAGAGCTTGTTCGGAAGAATTTTGATCGTTGCGCTCAAATTGGCCGTGATTTCATTCGTCTCTTACATGGCGTCGCACGTCTGGAACCGATGAAGCGTTTGTGGGATGATATACTACAAAACATTTCTTCTTTATCGTCTCATTTTTCAAGTCTTACTGAAATTTTGGAAATCACCACACCCCAATGTTTTACACAAACCCTCATACCACATGAAATGGAACAATGGGTTCGTTGGATGATGAAAAATGTTCATTGTGTTCCGAGAGTTCCTGTTCATCGTTATCAAGATTTTTTCCAAAGAAAATTCTTTTCAACTCCAGAAAGTCAGAG] consensusID : consensus_1295#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 516 fasta sequence [GGTAGATCTTCTGGAAAAAAACAGGTAATTCAGTTATACTCATGAGTTATGTTCACTAGAGATTGGCTAGTGAGTTTGGAAAGACAACCATTTTTGCTTCCCCTGACTGTATATACTTTGCTCCGGCTTATTCCAGATCATCATTTATCTCCTCAACAGGCTCCATTAGTCACTTCAAATCCATCTGTTCATCTATCCAAGTTACGACAGAAAGAATTGGCTTTGGTTGAAGAGCTTGTTCGGAAGAATTTTGATCGTTGCGCTCAAATTGGCCGTGATTTCATTCGCCTCTTACATGGCGTCGCACATCTGGAACCGATGAAGCGTTTGTGGGATGATATACTACAAAACATTTCTTCTTTATCGTCTCATTTTTCAAGTCTTACTGAAATTTTGGAAATCACCACACCCCAATGTTTTACACAAACCCTCATACCACGTGAAATGGAACAATGGGTTCGTTGGATGATGAAAAATGTTCATTGTGTTCCGACAGTTCCTGTTCATCGTTATCAA] [+] EMBL CD114097 [GGTAGATCTTCTGGAAAAAAACAGGTAATTCAGTTATACTCATGAGTTATGTTCACTAGAGATTGGCTAGTGAGTTTGGAAAGACAACCATTTTTGCTTCCCCTGACTGTATATACTTTGCTCCGGCTTATTCCAGATCATCATTTATCTCCTCAACAGGCTCCATTAGTCACTTCAAATCCATCTGTTCATCTATCCAAGTTACGACAGAAAGAATTGGCTTTGGTTGAAGAGCTTGTTCGGAAGAATTTTGATCGTTGCGCTCAAATTGGCCGTGATTTCATTCGCCTCTTACATGGCGTCGCACATCTGGAACCGATGAAGCGTTTGTGGGATGATATACTACAAAACATTTCTTCTTTATCGTCTCATTTTTCAAGTCTTACTGAAATTTTGGAAATCACCACACCCCAATGTTTTACACAAACCCTCATACCACGTGAAATGGAACAATGGGTTCGTTGGATGATGAAAAATGTTCATTGTGTTCCGACAGTTCCTGTTCATCGTTATCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1295#0 --TAGCCCTCAAAGATCTGTGGCTCATAGACAGCATGGTGGATCTTCTGGGAAAA----A 54 consensus_1295#1 GGTAGATCTTCTGGA-----AAAAAACAGGTAATTCAGTTATACTCATGAGTTATGTTCA 55 *** ** ** * ** * ** ** ** * * * consensus_1295#0 ACAAAGATTGGCTAGCGAGTTTGGAAAGACAACCATTTTTGCTTCCCCTAACTGTATATA 114 consensus_1295#1 CTAGAGATTGGCTAGTGAGTTTGGAAAGACAACCATTTTTGCTTCCCCTGACTGTATATA 115 * *********** ********************************* ********** consensus_1295#0 CTTTGCTCCGGCTTATTCCAGATCATCATTTATCTCCTCAACAGGCTCCATTAGTCACTT 174 consensus_1295#1 CTTTGCTCCGGCTTATTCCAGATCATCATTTATCTCCTCAACAGGCTCCATTAGTCACTT 175 ************************************************************ consensus_1295#0 CAAATCCATCTGTTCATCTATCCAAGTTACGACAGAAGGAATTGGCTCTGGTTGAAGAGC 234 consensus_1295#1 CAAATCCATCTGTTCATCTATCCAAGTTACGACAGAAAGAATTGGCTTTGGTTGAAGAGC 235 ************************************* ********* ************ consensus_1295#0 TTGTTCGGAAGAATTTTGATCGTTGCGCTCAAATTGGCCGTGATTTCATTCGTCTCTTAC 294 consensus_1295#1 TTGTTCGGAAGAATTTTGATCGTTGCGCTCAAATTGGCCGTGATTTCATTCGCCTCTTAC 295 **************************************************** ******* consensus_1295#0 ATGGCGTCGCACGTCTGGAACCGATGAAGCGTTTGTGGGATGATATACTACAAAACATTT 354 consensus_1295#1 ATGGCGTCGCACATCTGGAACCGATGAAGCGTTTGTGGGATGATATACTACAAAACATTT 355 ************ *********************************************** consensus_1295#0 CTTCTTTATCGTCTCATTTTTCAAGTCTTACTGAAATTTTGGAAATCACCACACCCCAAT 414 consensus_1295#1 CTTCTTTATCGTCTCATTTTTCAAGTCTTACTGAAATTTTGGAAATCACCACACCCCAAT 415 ************************************************************ consensus_1295#0 GTTTTACACAAACCCTCATACCACATGAAATGGAACAATGGGTTCGTTGGATGATGAAAA 474 consensus_1295#1 GTTTTACACAAACCCTCATACCACGTGAAATGGAACAATGGGTTCGTTGGATGATGAAAA 475 ************************ *********************************** consensus_1295#0 ATGTTCATTGTGTTCCGAGAGTTCCTGTTCATCGTTATCAAGATTTTTTCCAAAGAAAAT 534 consensus_1295#1 ATGTTCATTGTGTTCCGACAGTTCCTGTTCATCGTTATCAA------------------- 516 ****************** ********************** consensus_1295#0 TCTTTTCAACTCCAGAAAGTCAGAG 559 consensus_1295#1 ------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||