These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_130#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [CCTATCGTGATAAACCAATCGAGCTACACCGGCTGGAATAATCATCCCTCAAGGCCGTACCATGCCAGGCAGGTCGGTTGAAAAGTAGTAAGACCAAAAGCAGCGAACCCAGGTCCGAAGACGAAGTCGTACTGCTGACTGTACAGAAGTGTGACGGCAGTAAGGTGTTTCCTTCAGACAACCAGCATGACAGCGATGCTGCCTCCCCACAAGGAGGGGTGGGGTTAGAAAAGGTCGACCCTAATAATGTACACCTCGCTATATCCCACGGATATCCGTCTCCGGCAGTAAGGTCCCAACAAGTACGAAGCTAACATAAAAACTACCCACAAAAAGGTCGTGTGTGACCGACCTCAAGCAGTTGTCCCTTGGGCACTGCGGTCACACTCTCAGGTCACTAAGACCACCTCTAATCCAATTTCCTTTTCAGGTACCTCAAAAAGAACCCTTCCACGGTGTGGGCAACAGGGAAGTGATAACTGCCCTCATACCCCTAACAGCACTCAAGACCACTGTATTCATAATCAATCATACTACTAGAGTATTTGGTGCGCGAATACAGCCTTGNNTTCGTAAAACAGAAGATATTTGTCTTTATGCCTCATTGTTNCAATATTCACCTATT] [+] EMBL CD183658 [CCTATCGTGATAAACCAATCGAGCTACACCGGCTGGAATAATCATCCCTCAAGGCCGTACCATGCCAGGCAGGTCGGTTGAAAAGTAGTAAGACCAAAAGCAGCGAACCCAGGTCCGAAGACGAAGTCGTACTGCTGACTGTACAGAAGTGTGACGGCAGTAAGGTGTTTCCTTCAGACAACCAGCATGACAGCGATGCTGCCTCCCCACAAGGAGGGGTGGGGTTAGAAAAGGTCGACCCTAATAATGTACACCTCGCTATATCCCACGGATATCCGTCTCCGGCAGTAAGGTCCCAACAAGTACGAAGCTAACATAAAAACTACCCACAAAAAGGTCGTGTGTGACCGACCTCAAGCAGTTGTCCCTTGGGCACTGCGGTCACACTCTCAGGTCACTAAGACCACCTCTAATCCAATTTCCTTTTCAGGTACCTCAAAAAGAACCCTTCCACGGTGTGGGCAACAGGGAAGTGATAACTGCCCTCATACCCCTAACAGCACTCAAGACCACTGTATTCATAATCAATCATACTACTAGAGTATTTGGTGCGCGAATACAGCCTTGNNTTCGTAAAACAGAAGATATTTGTCTTTATGCCTCATTGTTNCAATATTCACCTATT] consensusID : consensus_130#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 83 fasta sequence [TGATTATGAATACAGCGGTCTTGAGTGCTGTTAGAGGTATTGGGGCAGTTATCACTTCCCCGGTGCCCACACCGTGGAAGGGT] [+] EMBL CD111622 [TGATTATGAATACAGCGGTCTTGAGTGCTGTTAGAGGTATTGGGGCAGTTATCACTTCCCCGGTGCCCACACCGTGGAAGGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_130#0 CCTATCGTGATAAACCAATCGAGCTACACCGGCTGGAATAATCATCCCTCAAGGCCGTAC 60 consensus_130#1 ------------------------------------------------------------ consensus_130#0 CATGCCAGGCAGGTCGGTTGAAAAGTAGTAAGACCAAAAGCAGCGAACCCAGGTCCGAAG 120 consensus_130#1 ------------------------------------------------------------ consensus_130#0 ACGAAGTCGTACTGCTGACTGTACAGAAGTGTGACGGCAGTAAGGTGTTTCCTTCAGACA 180 consensus_130#1 ------------------------------------------------------------ consensus_130#0 ACCAGCATGACAGCGATGCTGCCTCCCCACAAGGAGGGGTGGGGTTAGAAAAGGTCGACC 240 consensus_130#1 ------------------------------------------------------------ consensus_130#0 CTAATAATGTACACCTCGCTATATCCCACGGATATCCGTCTCCGGCAGTAAGGTCCCAAC 300 consensus_130#1 ------------------------------------------------------------ consensus_130#0 AAGTACGAAGCTAACATAAAAACTACCCACAAAAAGGTCGTGTGTGACCGACCTCAAGCA 360 consensus_130#1 ------------------------------------------------------------ consensus_130#0 GTTGTCCCTTGGGCACTGCGGTCACACTCTCAGGTCACTAAGACCACCTCTAATCCAATT 420 consensus_130#1 ----------------------------------TGATTATGAATACAGCGGTCTTGAGT 26 * * ** ** ** * * * consensus_130#0 TCCTTTTCAGGTACCTCAAAAAGAACC-CTTCCACGGTGTGGGCAACAGGGAAGTGATAA 479 consensus_130#1 GCTGTTAGAGGTATTGGGGCAGTTATCACTTCCCCGGTGCCCACACCGTGGAAGGGT--- 83 * ** ***** * * * ***** ***** ** * ***** * consensus_130#0 CTGCCCTCATACCCCTAACAGCACTCAAGACCACTGTATTCATAATCAATCATACTACTA 539 consensus_130#1 ------------------------------------------------------------ consensus_130#0 GAGTATTTGGTGCGCGAATACAGCCTTGNNTTCGTAAAACAGAAGATATTTGTCTTTATG 599 consensus_130#1 ------------------------------------------------------------ consensus_130#0 CCTCATTGTTNCAATATTCACCTATT 625 consensus_130#1 -------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||