cluster # 1308

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Schistosoma mansoni
cluster # 1308 cluster # 1308 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1308#0 length = 217 sequences # 1

consensus_1308#1 length = 206 sequences # 1

consensusID : consensus_1308#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 217
fasta sequence

                              [AACCTTTTATTATGAATGATAATAATCACAAAGTCAAACAAAATTCAAAGAAAACAACTTTATATCCCCCATTAAAAATGTTGTAATTGTCAATAACCATCGTCCTTAAAATATGAAACCCATAAAACTGGGATAAAGCCCATTCAATGTAAAATCTTTCAAGGGATGAAACAAAAGGAAAAGTTTTTTTACTAGTTGTTACCCACAAGGGATCAAA]

[+] EMBL CD076460             [AACCTTTTATTATGAATGATAATAATCACAAAGTCAAACAAAATTCAAAGAAAACAACTTTATATCCCCCATTAAAAATGTTGTAATTGTCAATAACCATCGTCCTTAAAATATGAAACCCATAAAACTGGGATAAAGCCCATTCAATGTAAAATCTTTCAAGGGATGAAACAAAAGGAAAAGTTTTTTTACTAGTTGTTACCCACAAGGGATCAAA]




>consensus_1308#0
AACCTTTTATTATGAATGATAATAATCACAAAGTCAAACAAAATTCAAAGAAAACAACTT
TATATCCCCCATTAAAAATGTTGTAATTGTCAATAACCATCGTCCTTAAAATATGAAACC
CATAAAACTGGGATAAAGCCCATTCAATGTAAAATCTTTCAAGGGATGAAACAAAAGGAA
AAGTTTTTTTACTAGTTGTTACCCACAAGGGATCAAA

consensusID : consensus_1308#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 206
fasta sequence

                              [AGCTATTATTATGAATGATAATAATCACGAAGTCAAACAAAATTCAAAGAAAACAACATTATATACACCATTAGAAATGTTGTAATTGTCGATAAGCATCGTACTTAAAATATGAAAACCATAAAACTGTGATAAAGCACATTCAATGTAAAATCTTTCAAGTGATGAAACAAAAGGAAAAGTTATTTTACTAGTTGTTACACACA]

[-] EMBL CD082875             [AGCTATTATTATGAATGATAATAATCACGAAGTCAAACAAAATTCAAAGAAAACAACATTATATACACCATTAGAAATGTTGTAATTGTCGATAAGCATCGTACTTAAAATATGAAAACCATAAAACTGTGATAAAGCACATTCAATGTAAAATCTTTCAAGTGATGAAACAAAAGGAAAAGTTATTTTACTAGTTGTTACACACA]




>consensus_1308#1
AGCTATTATTATGAATGATAATAATCACGAAGTCAAACAAAATTCAAAGAAAACAACATT
ATATACACCATTAGAAATGTTGTAATTGTCGATAAGCATCGTACTTAAAATATGAAAACC
ATAAAACTGTGATAAAGCACATTCAATGTAAAATCTTTCAAGTGATGAAACAAAAGGAAA
AGTTATTTTACTAGTTGTTACACACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1308#0      AACCTTTTATTATGAATGATAATAATCACAAAGTCAAACAAAATTCAAAGAAAACAACTT 60
consensus_1308#1      -AGCTATTATTATGAATGATAATAATCACGAAGTCAAACAAAATTCAAAGAAAACAACAT 59
                       * ** *********************** **************************** *

consensus_1308#0      TATATCCCCCATTAAAAATGTTGTAATTGTCAATAACCATCGTCCTTAAAATATGAAACC 120
consensus_1308#1      TATATACACCATTAGAAATGTTGTAATTGTCGATAAGCATCGTACTTAAAATATGAAAAC 119
                      ***** * ****** **************** **** ****** ************** *

consensus_1308#0      CATAAAACTGGGATAAAGCCCATTCAATGTAAAATCTTTCAAGGGATGAAACAAAAGGAA 180
consensus_1308#1      CATAAAACTGTGATAAAGCACATTCAATGTAAAATCTTTCAAGTGATGAAACAAAAGGAA 179
                      ********** ******** *********************** ****************

consensus_1308#0      AAGTTTTTTTACTAGTTGTTACCCACAAGGGATCAAA 217
consensus_1308#1      AAGTTATTTTACTAGTTGTTACACACA---------- 206
                      ***** **************** ****