These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1338#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence [AATGCGTCAATGTGGAAGTTACTTTGTTAAGAATGCAAATGGATAGAAAATTGCATTATTCAAACCGAAGGATGAATAGCCCTATGGGAAGCTTAATCCAAAATGGACCAAATGGATGCATAAACACTGCTGCCCTTGCTGTTTTGGTCGATCATGTTTGGTTCCTAATCAAGGTTACCTTTCAGAGGCTGGTGCCAGTCTTGTAGATCAGAGACTACGGCTCAATATTGTTCCTACAACAAGAGTTGTTCGTTTAGTAAGCGAAAGTTTCAACTACAGCACAGTTGATCGCGCAAAATCTAGGACTAAACAACACTTTGCTTCACGGTTCCCCGAGTTAGGCCGTCATTTCAACCGTCTTGGGCTTCCTCCAAAAATCGGATCTTTCCAGCTTTTTGTTTCTGGTTGTCGAGATGCTGACTATTGGCTACGTCATTTCGATAATGAATCACTTCCTAAGCCTACAGCTTCAGAATTCCGATTTCAGTTTGAAAAACTTGTTGTACTTGATTATCTTATTCGGAATACAGATCGTGGGAAATGATATTGGCTTATTCGTTATCAA] [+] EMBL CD161620 [AATGCGTCAATGTGGAAGTTACTTTGTTAAGAATGCAAATGGATAGAAAATTGCATTATTCAAACCGAAGGATGAATAGCCCTATGGGAAGCTTAATCCAAAATGGACCAAATGGATGCATAAACACTGCTGCCCTTGCTGTTTTGGTCGATCATGTTTGGTTCCTAATCAAGGTTACCTTTCAGAGGCTGGTGCCAGTCTTGTAGATCAGAGACTACGGCTCAATATTGTTCCTACAACAAGAGTTGTTCGTTTAGTAAGCGAAAGTTTCAACTACAGCACAGTTGATCGCGCAAAATCTAGGACTAAACAACACTTTGCTTCACGGTTCCCCGAGTTAGGCCGTCATTTCAACCGTCTTGGGCTTCCTCCAAAAATCGGATCTTTCCAGCTTTTTGTTTCTGGTTGTCGAGATGCTGACTATTGGCTACGTCATTTCGATAATGAATCACTTCCTAAGCCTACAGCTTCAGAATTCCGATTTCAGTTTGAAAAACTTGTTGTACTTGATTATCTTATTCGGAATACAGATCGTGGGAAATGATATTGGCTTATTCGTTATCAA] consensusID : consensus_1338#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 371 fasta sequence [AGAAGCTTACTAGTTAGGAATTAATCGTTGAAAAACAGTAATTATTGGCTAGTAAATATTTTTTAGTAGATATTAAGGGGAATTACGTTGCTTCTAACTATTATAGTAGGATTATTCAAATTCTGTTGCTTCATTTCTACTATTAGACATTTACTTTTTTCATCAGATCGGATCTTTCCAGCTTTTTGTTTCTGGTTGTCGAGATGCTGACTATTGGCTACGTCATTTCGATAATGAATCACTTCCTAAGCCTACAGCTTCAGGATTCCGATTTCAGTTTGAAAAACTTGTTGTACTTGATTATCTTATTCGGAATACAGGTATACAATAATCACGTCAGTTTTTATTTTGACAAGATGTTTTTGTTAATT] [+] EMBL CD197046 [AGAAGCTTACTAGTTAGGAATTAATCGTTGAAAAACAGTAATTATTGGCTAGTAAATATTTTTTAGTAGATATTAAGGGGAATTACGTTGCTTCTAACTATTATAGTAGGATTATTCAAATTCTGTTGCTTCATTTCTACTATTAGACATTTACTTTTTTCATCAGATCGGATCTTTCCAGCTTTTTGTTTCTGGTTGTCGAGATGCTGACTATTGGCTACGTCATTTCGATAATGAATCACTTCCTAAGCCTACAGCTTCAGGATTCCGATTTCAGTTTGAAAAACTTGTTGTACTTGATTATCTTATTCGGAATACAGGTATACAATAATCACGTCAGTTTTTATTTTGACAAGATGTTTTTGTTAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1338#0 AATGCGTCAATGTGGAAGTTACTTTGTTAAGAATGCAAATGGATAGAAAATTGCATTATT 60 consensus_1338#1 ------------------------------------------------------------ consensus_1338#0 CAAACCGAAGGATGAATAGCCCTATGGGAAGCTTAATCCAAAATGGACCAAATGGATGCA 120 consensus_1338#1 ------------------------------------------------------------ consensus_1338#0 TAAACACTGCTGCCCTTGCTGTTTTGGTCGATCATGTTTGGTTCCTAATCAAGGTTACCT 180 consensus_1338#1 ------------------------------------------------------------ consensus_1338#0 TTCAGAGGCTGGTGCCAGTCTTGTAGATCAGAGACTACGGCTCAATATTGTTCCTACAAC 240 consensus_1338#1 ---AGAAGCT--TACTAGT--TAGGAATTAATCGTTGAAAAACAGTAATTATTGGCTAGT 53 *** *** * * *** * ** * * ** ** * * * consensus_1338#0 AAGAGTTGTTCGTTTAGTAAGCGAAAGTTTCAACTACAGCACAGTTGATCGCGCAAAATC 300 consensus_1338#1 AAATATTTTT----TAGTAGATATTAAGGGGAATTACGTTGCTTCTAACTATTATAG--- 106 ** ** ** ***** * ** *** * * * * consensus_1338#0 TAGGACTAAACAACACTTTGCTTCACGGTTCCCCGAGTTAGGCCGTCATTTCAACCGTCT 360 consensus_1338#1 TAGGATTATTCAA-ATTCTGTTGCTTCATTTCTACTATTAGACATTTACTTTTTTCATC- 164 ***** ** *** * * ** * * ** * **** * * * ** * ** consensus_1338#0 TGGGCTTCCTCCAAAAATCGGATCTTTCCAGCTTTTTGTTTCTGGTTGTCGAGATGCTGA 420 consensus_1338#1 --------------AGATCGGATCTTTCCAGCTTTTTGTTTCTGGTTGTCGAGATGCTGA 210 * ******************************************** consensus_1338#0 CTATTGGCTACGTCATTTCGATAATGAATCACTTCCTAAGCCTACAGCTTCAGAATTCCG 480 consensus_1338#1 CTATTGGCTACGTCATTTCGATAATGAATCACTTCCTAAGCCTACAGCTTCAGGATTCCG 270 ***************************************************** ****** consensus_1338#0 ATTTCAGTTTGAAAAACTTGTTGTACTTGATTATCTTATTCGGAATACAGATCGTGGGAA 540 consensus_1338#1 ATTTCAGTTTGAAAAACTTGTTGTACTTGATTATCTTATTCGGAATACAGGTATACAATA 330 ************************************************** * * consensus_1338#0 ATGATATTGGCTTATTCGTTATCAA---------------- 565 consensus_1338#1 ATCACGTCAGTTTTTATTTTGACAAGATGTTTTTGTTAATT 371 ** * * * ** * ** *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||