These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1364#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence [AGCAATCATTTATTAAATAAAATCAAATTTTTCATCTTCATTGCTAAAAAAAGACATTGGGATATTCATCATTGGTTGTGTGTGTACGTGTAGGTGGTTTTTTTTTCACTAAATATGTATATGCGTGTCTGTTTGAAACACTTACACATGCATTAGTATGGTATGCATAAAAGAATTATGAAGCGAATATTTTCCAAACTGAAATGTGTGATAGTAATAATAATAGAGGAGAACAAGAACAATGATAATAGTAATATTAGTTCTCTTTTAGTAAATCATTATGACAGG] [+] EMBL BF936473 [AGCAATCATTTATTAAATAAAATCAAATTTTTCATCTTCATTGCTAAAAAAAGACATTGGGATATTCATCATTGGTTGTGTGTGTACGTGTAGGTGGTTTTTTTTTCACTAAATATGTATATGCGTGTCTGTTTGAAACACTTACACATGCATTAGTATGGTATGCATAAAAGAATTATGAAGCGAATATTTTCCAAACTGAAATGTGTGATAGTAATAATAATAGAGGAGAACAAGAACAATGATAATAGTAATATTAGTTCTCTTTTAGTAAATCATTATGACAGG] consensusID : consensus_1364#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 232 fasta sequence [TAAGGATTTCCCCATATTTATTTATTTCCTGATAATCCTTCCAATAAATTTTGGTGGCGGTAAAAGGAATCATTTATTAAATAAAATCAAATTTTTCATCTTCATTGCTAAAACAAGACCACTTCCCTCCTATTCATCAATTGGTTGTGTGTGTACGTGTAGGGTTGGTTTTTTTTTCACTAAATATGTATAATGGGTGTCTGTTTGATACACTTACACATGCATTAGTATG] [+] EMBL SMAA28900 [TAAGGATTTCCCCATATTTATTTATTTCCTGATAATCCTTCCAATAAATTTTGGTGGCGGTAAAAGGAATCATTTATTAAATAAAATCAAATTTTTCATCTTCATTGCTAAAACAAGACCACTTCCCTCCTATTCATCAATTGGTTGTGTGTGTACGTGTAGGGTTGGTTTTTTTTTCACTAAATATGTATAATGGGTGTCTGTTTGATACACTTACACATGCATTAGTATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1364#0 ------------------------------------------------------------ consensus_1364#1 TAAGGATTTCCCCATATTTATTTATTTCCTGATAATCCTTCCAATAAATTTTGGTGGCGG 60 consensus_1364#0 ----AGCAATCATTTATTAAATAAAATCAAATTTTTCATCTTCATTGCTAAAAAAAGACA 56 consensus_1364#1 TAAAAGGAATCATTTATTAAATAAAATCAAATTTTTCATCTTCATTGCTAAAACAAGACC 120 ** ********************************************** ***** consensus_1364#0 ----TTGGGATATTCATCA-TTGGTTGTGTGTGTACGTGTAGG--TGGTTTTTTTTTCAC 109 consensus_1364#1 ACTTCCCTCCTATTCATCAATTGGTTGTGTGTGTACGTGTAGGGTTGGTTTTTTTTTCAC 180 ********* *********************** *************** consensus_1364#0 TAAATATGTATA-TGCGTGTCTGTTTGAAACACTTACACATGCATTAGTATGGTATGCAT 168 consensus_1364#1 TAAATATGTATAATGGGTGTCTGTTTGATACACTTACACATGCATTAGTATG-------- 232 ************ ** ************ *********************** consensus_1364#0 AAAAGAATTATGAAGCGAATATTTTCCAAACTGAAATGTGTGATAGTAATAATAATAGAG 228 consensus_1364#1 ------------------------------------------------------------ consensus_1364#0 GAGAACAAGAACAATGATAATAGTAATATTAGTTCTCTTTTAGTAAATCATTATGACAGG 288 consensus_1364#1 ------------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||