These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1390#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 559 fasta sequence [GATATTTTCACCCGCGGTAAGTGGCCTCTAGGGGTAATAGAGAGTTGTGAAACAGACAAGGACGGAAAGGTTAGGACGGTGTCAGTACGTACTAATAACGGGTCTATTAGAAGGGATATACGTAAGGTATGTCTCCTAGAAGGGTCCAATTAGTTAATTGTCAAACAATGTAGACAGAACGAGTAGGCGTACTGTTGTAAGTCCTACCCGTTCTTTTAGTGAGGAAAGCGATTAGGTGAACCATGGCAAAAAAGACATCAGAATAGCTTGTGCAGTATGGAGGGATTTTGGGGGCCGGTGTTGGATCCATTTTGCAAGTGAAAATCCCTCCATGCATACACTTGTGATTTCTTCCTTACGTTTTCTTTATTTGTATATGCTGATAACATTTATTATGCTAATTAAGACTGTAACGTTCAATTTTCTTGGTTTTACTATCGTTTTTTATTGAGTCTCCATGTTCTTTACTGAGCTGTATATAGTTTGTTTTAATTGCTATTATTCTGGTATCTGCCATATTGGCTGCTCGCTTTTTGATTGTGCGGTTTGAACTTGACTG] [+] EMBL BF936991 [GATATTTTCACCCGCGGTAAGTGGCCTCTAGGGGTAATAGAGAGTTGTGAAACAGACAAGGACGGAAAGGTTAGGACGGTGTCAGTACGTACTAATAACGGGTCTATTAGAAGGGATATACGTAAGGTATGTCTCCTAGAAGGGTCCAATTAGTTAATTGTCAAACAATGTAGACAGAACGAGTAGGCGTACTGTTGTAAGTCCTACCCGTTCTTTTAGTGAGGAAAGCGATTAGGTGAACCATGGCAAAAAAGACATCAGAATAGCTTGTGCAGTATGGAGGGATTTTGGGGGCCGGTGTTGGATCCATTTTGCAAGTGAAAATCCCTCCATGCATACACTTGTGATTTCTTCCTTACGTTTTCTTTATTTGTATATGCTGATAACATTTATTATGCTAATTAAGACTGTAACGTTCAATTTTCTTGGTTTTACTATCGTTTTTTATTGAGTCTCCATGTTCTTTACTGAGCTGTATATAGTTTGTTTTAATTGCTATTATTCTGGTATCTGCCATATTGGCTGCTCGCTTTTTGATTGTGCGGTTTGAACTTGACTG] consensusID : consensus_1390#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence [TTATTGTGATTGATGGGGTGTCTTAGAAGGGATATACGTAAGGTATGTCTCCTAGAAGGGTCCAATTAGTTAATTGTCAAACAATGTAGACAGAACGAGTAGGCGTACTGTTGTAAGTCCTACCCGTTCTTTTAGTGAGGAAAGCGATTAGGTGAACCATGGCAAAAAAGACATCAGAATAGCTTGTGCAGTATGGAGGGATTTTGGGGGCCGGTGTTGGATCCATTTTGCAAGTGAAAATCCCTCCATGCATACACTTGTGATTTCTTCCTTACGTTTTCTTTATTTGTACATGCTGTTAACATTTATTATGCTAATTAAGACTGTAACGCTCAATTTTCTTGGTTTTACTATCGTTTTTTATTGAC] [-] EMBL BG931737 [TTATTGTGATTGATGGGGTGTCTTAGAAGGGATATACGTAAGGTATGTCTCCTAGAAGGGTCCAATTAGTTAATTGTCAAACAATGTAGACAGAACGAGTAGGCGTACTGTTGTAAGTCCTACCCGTTCTTTTAGTGAGGAAAGCGATTAGGTGAACCATGGCAAAAAAGACATCAGAATAGCTTGTGCAGTATGGAGGGATTTTGGGGGCCGGTGTTGGATCCATTTTGCAAGTGAAAATCCCTCCATGCATACACTTGTGATTTCTTCCTTACGTTTTCTTTATTTGTACATGCTGTTAACATTTATTATGCTAATTAAGACTGTAACGCTCAATTTTCTTGGTTTTACTATCGTTTTTTATTGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1390#0 GATATTTTCACCCGCGGTAAGTGGCCTCTAGGGGTAATAGAGAGTTGTGAAACAGACAAG 60 consensus_1390#1 ------------------------------------------------------------ consensus_1390#0 GACGGAAAGGTTAGGACGGTGTCAGTACGTACTAATAACGGGTCTATTAGAAGGGATATA 120 consensus_1390#1 ---------------------TTATTGTG-ATTGATG--GGGTGTCTTAGAAGGGATATA 36 * * * * * * ** **** * ************** consensus_1390#0 CGTAAGGTATGTCTCCTAGAAGGGTCCAATTAGTTAATTGTCAAACAATGTAGACAGAAC 180 consensus_1390#1 CGTAAGGTATGTCTCCTAGAAGGGTCCAATTAGTTAATTGTCAAACAATGTAGACAGAAC 96 ************************************************************ consensus_1390#0 GAGTAGGCGTACTGTTGTAAGTCCTACCCGTTCTTTTAGTGAGGAAAGCGATTAGGTGAA 240 consensus_1390#1 GAGTAGGCGTACTGTTGTAAGTCCTACCCGTTCTTTTAGTGAGGAAAGCGATTAGGTGAA 156 ************************************************************ consensus_1390#0 CCATGGCAAAAAAGACATCAGAATAGCTTGTGCAGTATGGAGGGATTTTGGGGGCCGGTG 300 consensus_1390#1 CCATGGCAAAAAAGACATCAGAATAGCTTGTGCAGTATGGAGGGATTTTGGGGGCCGGTG 216 ************************************************************ consensus_1390#0 TTGGATCCATTTTGCAAGTGAAAATCCCTCCATGCATACACTTGTGATTTCTTCCTTACG 360 consensus_1390#1 TTGGATCCATTTTGCAAGTGAAAATCCCTCCATGCATACACTTGTGATTTCTTCCTTACG 276 ************************************************************ consensus_1390#0 TTTTCTTTATTTGTATATGCTGATAACATTTATTATGCTAATTAAGACTGTAACGTTCAA 420 consensus_1390#1 TTTTCTTTATTTGTACATGCTGTTAACATTTATTATGCTAATTAAGACTGTAACGCTCAA 336 *************** ****** ******************************** **** consensus_1390#0 TTTTCTTGGTTTTACTATCGTTTTTTATTGAGTCTCCATGTTCTTTACTGAGCTGTATAT 480 consensus_1390#1 TTTTCTTGGTTTTACTATCGTTTTTTATTGAC---------------------------- 368 ******************************* consensus_1390#0 AGTTTGTTTTAATTGCTATTATTCTGGTATCTGCCATATTGGCTGCTCGCTTTTTGATTG 540 consensus_1390#1 ------------------------------------------------------------ consensus_1390#0 TGCGGTTTGAACTTGACTG 559 consensus_1390#1 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||