These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1426#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence [ATGTCTGTTTATCTGGACAATGAATGATTAAAATGATCGATTTTGTTGTTGTTTTTTCTTCAAAAATAAAAAGAGTATTTTCTCTAGACATTTCTCTCTCTCCTTCTTATCGATTGTAAGTGATTATCTTCAATGTACGTGGTATTGTATGACAGAATGGTTCCCTTCTTATCGTTCTTCTTCTGTAATAAAAAGGAATACCCCATCCATTATGACTGAATTGTATTTCGCTTAAGTTTCTTTCTTTCATCATTATTTTGATTACATACCGTTATGTATTGGTAAATACAATTCTGTTGTTGGTCATCATGATCATCATCATTTATTGATTGAGATCTCTTTGTATCGATTGAATTTTGTTATTTTGTGTAATCAGTAAACATTTTCTCTCTGTTTTTCGATCTTGTTTGTATAAGTGTCGNTA] [+] EMBL CD116866 [ATGTCTGTTTATCTGGACAATGAATGATTAAAATGATCGATTTTGTTGTTGTTTTTTCTTCAAAAATAAAAAGAGTATTTTCTCTAGACATTTCTCTCTCTCCTTCTTATCGATTGTAAGTGATTATCTTCAATGTACGTGGTATTGTATGACAGAATGGTTCCCTTCTTATCGTTCTTCTTCTGTAATAAAAAGGAATACCCCATCCATTATGACTGAATTGTATTTCGCTTAAGTTTCTTTCTTTCATCATTATTTTGATTACATACCGTTATGTATTGGTAAATACAATTCTGTTGTTGGTCATCATGATCATCATCATTTATTGATTGAGATCTCTTTGTATCGATTGAATTTTGTTATTTTGTGTAATCAGTAAACATTTTCTCTCTGTTTTTCGATCTTGTTTGTATAAGTGTCGNTA] consensusID : consensus_1426#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 358 fasta sequence [ACTGTGAGGATCCCCTCATAGGTGCGCAGGAATGTACGTGGTATTGTATGACAGAATGGTTCCTTTCTTATCGTTCTTCTTCTGTAATAAAAAGGAGGACCCCATCCATTATGACTGAATTGTATTTCGCATAAGTTTCTTTCTTTCATCATTATTTTGATTACATACCGTTATGTATTGGTAAATACAATTCTGTTGTTGGTCATCATGATCATCATCATTTATTGATTGAGATCTCTTTGTATCGATTGAATTTTGATATTTTGTGTAATCAGTAAACATTTTCTCTCTGTTTTTCGATCTTGTTTGTATAAATGTCGTTATTGTTCTACAATGCTAAATGGAGTACATACTCTAC] [+] EMBL CD060781 [ACTGTGAGGATCCCCTCATAGGTGCGCAGGAATGTACGTGGTATTGTATGACAGAATGGTTCCTTTCTTATCGTTCTTCTTCTGTAATAAAAAGGAGGACCCCATCCATTATGACTGAATTGTATTTCGCATAAGTTTCTTTCTTTCATCATTATTTTGATTACATACCGTTATGTATTGGTAAATACAATTCTGTTGTTGGTCATCATGATCATCATCATTTATTGATTGAGATCTCTTTGTATCGATTGAATTTTGATATTTTGTGTAATCAGTAAACATTTTCTCTCTGTTTTTCGATCTTGTTTGTATAAATGTCGTTATTGTTCTACAATGCTAAATGGAGTACATACTCTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1426#0 ATGTCTGTTTATCTGGACAATGAATGATTAAAATGATCGATTTTGTTGTTGTTTTTTCTT 60 consensus_1426#1 ------------------------------------------------------------ consensus_1426#0 CAAAAATAAAAAGAGTATTTTCTCTAGACATTTCTCTCTCTCCTTCTTATCGATTGTAAG 120 consensus_1426#1 --------------------------------------ACTGTGAGGATCCCCTCATAGG 22 ** * * ** * consensus_1426#0 TGATTATCTTCAATGTACGTGGTATTGTATGACAGAATGGTTCCCTTCTTATCGTTCTTC 180 consensus_1426#1 TGCGCAGG---AATGTACGTGGTATTGTATGACAGAATGGTTCCTTTCTTATCGTTCTTC 79 ** * ********************************* *************** consensus_1426#0 TTCTGTAATAAAAAGGAATACCCCATCCATTATGACTGAATTGTATTTCGCTTAAGTTTC 240 consensus_1426#1 TTCTGTAATAAAAAGGAGGACCCCATCCATTATGACTGAATTGTATTTCGCATAAGTTTC 139 ***************** ******************************** ******** consensus_1426#0 TTTCTTTCATCATTATTTTGATTACATACCGTTATGTATTGGTAAATACAATTCTGTTGT 300 consensus_1426#1 TTTCTTTCATCATTATTTTGATTACATACCGTTATGTATTGGTAAATACAATTCTGTTGT 199 ************************************************************ consensus_1426#0 TGGTCATCATGATCATCATCATTTATTGATTGAGATCTCTTTGTATCGATTGAATTTTGT 360 consensus_1426#1 TGGTCATCATGATCATCATCATTTATTGATTGAGATCTCTTTGTATCGATTGAATTTTGA 259 *********************************************************** consensus_1426#0 TATTTTGTGTAATCAGTAAACATTTTCTCTCTGTTTTTCGATCTTGTTTGTATAAGTGTC 420 consensus_1426#1 TATTTTGTGTAATCAGTAAACATTTTCTCTCTGTTTTTCGATCTTGTTTGTATAAATGTC 319 ******************************************************* **** consensus_1426#0 GNTA----------------------------------- 424 consensus_1426#1 GTTATTGTTCTACAATGCTAAATGGAGTACATACTCTAC 358 * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||