cluster # 1438

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Schistosoma mansoni
cluster # 1438 cluster # 1438 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1438#0 length = 669 sequences # 1

consensus_1438#1 length = 301 sequences # 1

consensusID : consensus_1438#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 669
fasta sequence

                              [ACTTTTCATACAATTCATCAGTTTAAAGTGATAGAATACTGACGGATATTAGTTATTTTCTGGGATATTTACTCAGTTCGATAGGAACTCTTTATGTGTTTGACAATTTACACACTATTTCTTCACATCCAGCTTTTAAGTATTTGCATAACCGACAAACAGGCGAACCAACAACATTGAAATAATCTCCATCGATCCGCTCAATTAAACTTGAACCCAACCCCTGGATACCATAAGCTCCAGCTTTATCCATTGGCTCTTCAGACTGAACATACCCCTCAATCATGAGAGGACTTAATTCAATCATCTTTACATTTGNTACTTCATGAAATTGATCAGTTTTCTTGCTGTTGCCAGATACAATCCACTTTTAACATACACCAGTTATTACTTGGATGACATTTCCACTCAAACAACTTGAGTATATTTACAGGGTCCACGTGACTTGAAGGTTTTGCCAAAAATACANTCCCTCAAACATACCATAGTATCTGCTCCTATGACTACATAGNTGCGTTCACTGATNATCAAGGTATTCACCACTGCATCCACCTTTAGTTTAGCTATGGCTTCCATATGAGCTGGTATTGATTGAAAGGTTTCTGAAGGGCCTCCTTGCGGAATTTCTTTGGGCCCCCTCTCTCCCCCACAAGGAGGGGGGGGGGGGCC]

[+] EMBL CD076896             [ACTTTTCATACAATTCATCAGTTTAAAGTGATAGAATACTGACGGATATTAGTTATTTTCTGGGATATTTACTCAGTTCGATAGGAACTCTTTATGTGTTTGACAATTTACACACTATTTCTTCACATCCAGCTTTTAAGTATTTGCATAACCGACAAACAGGCGAACCAACAACATTGAAATAATCTCCATCGATCCGCTCAATTAAACTTGAACCCAACCCCTGGATACCATAAGCTCCAGCTTTATCCATTGGCTCTTCAGACTGAACATACCCCTCAATCATGAGAGGACTTAATTCAATCATCTTTACATTTGNTACTTCATGAAATTGATCAGTTTTCTTGCTGTTGCCAGATACAATCCACTTTTAACATACACCAGTTATTACTTGGATGACATTTCCACTCAAACAACTTGAGTATATTTACAGGGTCCACGTGACTTGAAGGTTTTGCCAAAAATACANTCCCTCAAACATACCATAGTATCTGCTCCTATGACTACATAGNTGCGTTCACTGATNATCAAGGTATTCACCACTGCATCCACCTTTAGTTTAGCTATGGCTTCCATATGAGCTGGTATTGATTGAAAGGTTTCTGAAGGGCCTCCTTGCGGAATTTCTTTGGGCCCCCTCTCTCCCCCACAAGGAGGGGGGGGGGGGCC]




>consensus_1438#0
ACTTTTCATACAATTCATCAGTTTAAAGTGATAGAATACTGACGGATATTAGTTATTTTC
TGGGATATTTACTCAGTTCGATAGGAACTCTTTATGTGTTTGACAATTTACACACTATTT
CTTCACATCCAGCTTTTAAGTATTTGCATAACCGACAAACAGGCGAACCAACAACATTGA
AATAATCTCCATCGATCCGCTCAATTAAACTTGAACCCAACCCCTGGATACCATAAGCTC
CAGCTTTATCCATTGGCTCTTCAGACTGAACATACCCCTCAATCATGAGAGGACTTAATT
CAATCATCTTTACATTTGNTACTTCATGAAATTGATCAGTTTTCTTGCTGTTGCCAGATA
CAATCCACTTTTAACATACACCAGTTATTACTTGGATGACATTTCCACTCAAACAACTTG
AGTATATTTACAGGGTCCACGTGACTTGAAGGTTTTGCCAAAAATACANTCCCTCAAACA
TACCATAGTATCTGCTCCTATGACTACATAGNTGCGTTCACTGATNATCAAGGTATTCAC
CACTGCATCCACCTTTAGTTTAGCTATGGCTTCCATATGAGCTGGTATTGATTGAAAGGT
TTCTGAAGGGCCTCCTTGCGGAATTTCTTTGGGCCCCCTCTCTCCCCCACAAGGAGGGGG
GGGGGGGCC

consensusID : consensus_1438#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 301
fasta sequence

                              [CAGACTGAACATACCCCTCAATCATGAGAGGACTTAATTCAATCATCTTTACATTTGTTACTTCATGAAATTGATCCGTTTTCTGCTGTTTCCCAGATACAATCCACTTTAGACATACACCAGTTATCACTTGATGAACAATCCCACTCAAATGAGTATATTTACAGCGTCCACGTGACTTGAGGGTTTGCCAAAAATACAACCCTCAAGACATACCATAGTGTCTGCTCCTATGACTACATAGTTACGTTCACTGATATCCAAGGTATTCACCACTGCATCCACTTTAAGTTTAGCTATG]

[-] EMBL CD162534             [CAGACTGAACATACCCCTCAATCATGAGAGGACTTAATTCAATCATCTTTACATTTGTTACTTCATGAAATTGATCCGTTTTCTGCTGTTTCCCAGATACAATCCACTTTAGACATACACCAGTTATCACTTGATGAACAATCCCACTCAAATGAGTATATTTACAGCGTCCACGTGACTTGAGGGTTTGCCAAAAATACAACCCTCAAGACATACCATAGTGTCTGCTCCTATGACTACATAGTTACGTTCACTGATATCCAAGGTATTCACCACTGCATCCACTTTAAGTTTAGCTATG]




>consensus_1438#1
CAGACTGAACATACCCCTCAATCATGAGAGGACTTAATTCAATCATCTTTACATTTGTTA
CTTCATGAAATTGATCCGTTTTCTGCTGTTTCCCAGATACAATCCACTTTAGACATACAC
CAGTTATCACTTGATGAACAATCCCACTCAAATGAGTATATTTACAGCGTCCACGTGACT
TGAGGGTTTGCCAAAAATACAACCCTCAAGACATACCATAGTGTCTGCTCCTATGACTAC
ATAGTTACGTTCACTGATATCCAAGGTATTCACCACTGCATCCACTTTAAGTTTAGCTAT
G

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1438#0      ACTTTTCATACAATTCATCAGTTTAAAGTGATAGAATACTGACGGATATTAGTTATTTTC 60
consensus_1438#1      ------------------------------------------------------------
                                                                                  

consensus_1438#0      TGGGATATTTACTCAGTTCGATAGGAACTCTTTATGTGTTTGACAATTTACACACTATTT 120
consensus_1438#1      ------------------------------------------------------------
                                                                                  

consensus_1438#0      CTTCACATCCAGCTTTTAAGTATTTGCATAACCGACAAACAGGCGAACCAACAACATTGA 180
consensus_1438#1      ------------------------------------------------------------
                                                                                  

consensus_1438#0      AATAATCTCCATCGATCCGCTCAATTAAACTTGAACCCAACCCCTGGATACCATAAGCTC 240
consensus_1438#1      ------------------------------------------------------------
                                                                                  

consensus_1438#0      CAGCTTTATCCATTGGCTCTTCAGACTGAACATACCCCTCAATCATGAGAGGACTTAATT 300
consensus_1438#1      ---------------------CAGACTGAACATACCCCTCAATCATGAGAGGACTTAATT 39
                                           ***************************************

consensus_1438#0      CAATCATCTTTACATTTGNTACTTCATGAAATTGATCAGTTTTCTTGCTGTTGCCAGATA 360
consensus_1438#1      CAATCATCTTTACATTTGTTACTTCATGAAATTGATCCGTTTTCTGCTGTTTCCCAGATA 99
                      ****************** ****************** *******     ** *******

consensus_1438#0      CAATCCACTTTTAACATACACCAGTTATTACTTGGATGACATTTCCACTCAAACAACTTG 420
consensus_1438#1      CAATCCACTTTAGACATACACCAGTTATCACTTGATGAACAATCCCACTCAAA-----TG 154
                      ***********  *************** *****    *** * *********     **

consensus_1438#0      AGTATATTTACAGGGTCCACGTGACTTGAAGGTTTTGCCAAAAATACANTCCCTCAAACA 480
consensus_1438#1      AGTATATTTACAGCGTCCACGTGACTTGAGGGTTT-GCCAAAAATACAACCCTCAAGACA 213
                      ************* *************** ***** ************  **   * ***

consensus_1438#0      TACCATAGTATCTGCTCCTATGACTACATAGNTGCGTTCACTGATNATCAAGGTATTCAC 540
consensus_1438#1      TACCATAGTGTCTGCTCCTATGACTACATAGTTACGTTCACTGATATCCAAGGTATTCAC 273
                      ********* ********************* * ***********   ************

consensus_1438#0      CACTGCATCCACCTTTAGTTTAGCTATGGCTTCCATATGAGCTGGTATTGATTGAAAGGT 600
consensus_1438#1      CACTGCATCCACTTTAAGTTTAGCTATG-------------------------------- 301
                      ************ ** ************                                

consensus_1438#0      TTCTGAAGGGCCTCCTTGCGGAATTTCTTTGGGCCCCCTCTCTCCCCCACAAGGAGGGGG 660
consensus_1438#1      ------------------------------------------------------------
                                                                                  

consensus_1438#0      GGGGGGGCC 669
consensus_1438#1      ---------