cluster # 144

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Schistosoma mansoni
cluster # 144 cluster # 144 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_144#0 length = 688 sequences # 1

consensus_144#1 length = 304 sequences # 1

consensusID : consensus_144#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 688
fasta sequence

                              [CGGCACGACGCTGAACAANAATTGTATATTTGAAAAAAATAAAACATTAACAAATTTATTAGGAGATTTAACTTTGCTAGTAGATTCCAATAATCCAGAAACTAAACAGAAAGAAGCTGAACATTTAATGAAACAATTATTTAATGAAGTAATTGAAGAACGTCAATTAAATAGTTTACGTAAACCAATTGAAGATCGATTTTTATGGTATACTAAAGAAGGTGAAAAACGTGAACAATTTAATGCGGAAAAAGCAAGAAAATTAGAAAAACAACAACGTAAACTAAGAAAATAGTCAATATTGTAAATATTTAATCTGTAAATTTAATGTTTCATAATTGTTAAAGATGTTGAAAAAGAATGTGTAATTTACTGTCTTACCTACGCCTGTTACTCCCAATGAAGCATAGGCCGCCGACCAGCATTCTCCAACCCACTCGGTCTTGAACCTTCCTTTCTAGTTCTATCCAGTTTTGGTTCATTCTTCTCATATCTGTCTCTATTTCTCGGTGTAATGTGTTCTTTGGTCCTCCACTTCTCCTTTGACATTCAGGATTCCATATGAGGGCTTGTCTTGTGACGCAGTTGGGTGAATTCCCTAGTGTGTGTCCTATCCACTTCCAGCGCTTCTTCCTCCGCTGATGTGTAATTTATGCATCACTTATTAGTCAGTGAGTACAAAAATGCA]

[+] EMBL CD081681             [CGGCACGACGCTGAACAANAATTGTATATTTGAAAAAAATAAAACATTAACAAATTTATTAGGAGATTTAACTTTGCTAGTAGATTCCAATAATCCAGAAACTAAACAGAAAGAAGCTGAACATTTAATGAAACAATTATTTAATGAAGTAATTGAAGAACGTCAATTAAATAGTTTACGTAAACCAATTGAAGATCGATTTTTATGGTATACTAAAGAAGGTGAAAAACGTGAACAATTTAATGCGGAAAAAGCAAGAAAATTAGAAAAACAACAACGTAAACTAAGAAAATAGTCAATATTGTAAATATTTAATCTGTAAATTTAATGTTTCATAATTGTTAAAGATGTTGAAAAAGAATGTGTAATTTACTGTCTTACCTACGCCTGTTACTCCCAATGAAGCATAGGCCGCCGACCAGCATTCTCCAACCCACTCGGTCTTGAACCTTCCTTTCTAGTTCTATCCAGTTTTGGTTCATTCTTCTCATATCTGTCTCTATTTCTCGGTGTAATGTGTTCTTTGGTCCTCCACTTCTCCTTTGACATTCAGGATTCCATATGAGGGCTTGTCTTGTGACGCAGTTGGGTGAATTCCCTAGTGTGTGTCCTATCCACTTCCAGCGCTTCTTCCTCCGCTGATGTGTAATTTATGCATCACTTATTAGTCAGTGAGTACAAAAATGCA]




>consensus_144#0
CGGCACGACGCTGAACAANAATTGTATATTTGAAAAAAATAAAACATTAACAAATTTATT
AGGAGATTTAACTTTGCTAGTAGATTCCAATAATCCAGAAACTAAACAGAAAGAAGCTGA
ACATTTAATGAAACAATTATTTAATGAAGTAATTGAAGAACGTCAATTAAATAGTTTACG
TAAACCAATTGAAGATCGATTTTTATGGTATACTAAAGAAGGTGAAAAACGTGAACAATT
TAATGCGGAAAAAGCAAGAAAATTAGAAAAACAACAACGTAAACTAAGAAAATAGTCAAT
ATTGTAAATATTTAATCTGTAAATTTAATGTTTCATAATTGTTAAAGATGTTGAAAAAGA
ATGTGTAATTTACTGTCTTACCTACGCCTGTTACTCCCAATGAAGCATAGGCCGCCGACC
AGCATTCTCCAACCCACTCGGTCTTGAACCTTCCTTTCTAGTTCTATCCAGTTTTGGTTC
ATTCTTCTCATATCTGTCTCTATTTCTCGGTGTAATGTGTTCTTTGGTCCTCCACTTCTC
CTTTGACATTCAGGATTCCATATGAGGGCTTGTCTTGTGACGCAGTTGGGTGAATTCCCT
AGTGTGTGTCCTATCCACTTCCAGCGCTTCTTCCTCCGCTGATGTGTAATTTATGCATCA
CTTATTAGTCAGTGAGTACAAAAATGCA

consensusID : consensus_144#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 304
fasta sequence

                              [GGGATGAGGGTTTTTATNCCGTTATGATGTGTTATAGTAATGTGTTATCAGATATATGAGTCTTTNCAAGTAAGTATAATTATTCCGAGTGAATCTCGGTTATTGGAGTTTGTTTGGACCTTGAATNCCANCTTTTATAGTTTTAGTATTATGCTTTTTTAACTTGAAAATATTTAGTTTATAATAGTNCGTTCCGTTTTCCTGATCCAGTTAAGGTAGTAGGTCACCAGTGGTATTGAATCTTATGAACTACCNNGGGGGATAAAGTATGAATNCNTTTATAACTGAATTTGATAGGTGGTGT]

[+] EMBL AA559744             [GGGATGAGGGTTTTTATNCCGTTATGATGTGTTATAGTAATGTGTTATCAGATATATGAGTCTTTNCAAGTAAGTATAATTATTCCGAGTGAATCTCGGTTATTGGAGTTTGTTTGGACCTTGAATNCCANCTTTTATAGTTTTAGTATTATGCTTTTTTAACTTGAAAATATTTAGTTTATAATAGTNCGTTCCGTTTTCCTGATCCAGTTAAGGTAGTAGGTCACCAGTGGTATTGAATCTTATGAACTACCNNGGGGGATAAAGTATGAATNCNTTTATAACTGAATTTGATAGGTGGTGT]




>consensus_144#1
GGGATGAGGGTTTTTATNCCGTTATGATGTGTTATAGTAATGTGTTATCAGATATATGAG
TCTTTNCAAGTAAGTATAATTATTCCGAGTGAATCTCGGTTATTGGAGTTTGTTTGGACC
TTGAATNCCANCTTTTATAGTTTTAGTATTATGCTTTTTTAACTTGAAAATATTTAGTTT
ATAATAGTNCGTTCCGTTTTCCTGATCCAGTTAAGGTAGTAGGTCACCAGTGGTATTGAA
TCTTATGAACTACCNNGGGGGATAAAGTATGAATNCNTTTATAACTGAATTTGATAGGTG
GTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_144#0      CGGCACGACGCTGAACAANAATTGTATATTTGAAAAAAATAAAACATTAACAAATTTATT 60
consensus_144#1      ------------------------------------------------------------
                                                                                 

consensus_144#0      AGGAGATTTAACTTTGCTAGTAGATTCCAATAATCCAGAAACTAAACAGAAAGAAGCTGA 120
consensus_144#1      ------------------------------------------------------------
                                                                                 

consensus_144#0      ACATTTAATGAAACAATTATTTAATGAAGTAATTGAAGAACGTCAATTAAATAGTTTACG 180
consensus_144#1      ------------------------------------------------------------
                                                                                 

consensus_144#0      TAAACCAATTGAAGATCGATTTTTATGGTATACTAAAGAAGGTGAAAAACGTGAACAATT 240
consensus_144#1      ------------------------------------------------------------
                                                                                 

consensus_144#0      TAATGCGGAAAAAGCAAGAAAATTAGAAAAACAACAACGTAAACTAAGAAAATAGTCAAT 300
consensus_144#1      ------------------------------------------------------------
                                                                                 

consensus_144#0      ATTGTAAATATTTAATCTGTAAATTTAATGTTTCATAATTGTTAAAGATGTTGAAAAAGA 360
consensus_144#1      --------------------GGGATGAGGGTTTTTATNCCGTTAT-GATGTGTTATAGTA 39
                                             * *  ****       ****  *****   * *  *

consensus_144#0      ATGTGTAATTTACTGTCTTACCTACGCCTGTTACTCCCAATGAAGCATAGGC-CGCCGAC 419
consensus_144#1      ATGTGTTATCAGATATATGA-----GTCT-----TTNCAAGTAAGTATAATTATTCCGAG 89
                     ****** **    * * * *     * **     *  ***  *** ***      **** 

consensus_144#0      CAGCATTCTCCAACCCACTCGGTCTTGAACCTTCCTTTCTAGTTCTATCCAGTTTTGGT- 478
consensus_144#1      TGAATCTCGGTTATTGGAGTTTGTTTGGACCTTGAATNCCANCTTT-TATAGTTTTAGTA 148
                           **    *           *** *****   * * *  * * *  ****** ** 

consensus_144#0      TCATTCTTCTCATATCTGTCTCTATTTCTCGGTGTAATGTGTTCTTTGGTCCTCCACTTC 538
consensus_144#1      TTATGCTTTTTTAACTTGAAAATATTTAGTT-TATAATAGTNCGTTCCGTTTTCCTGATC 207
                     * ** *** *   *  **    *****     * ****      **  **  ***   **

consensus_144#0      TCCTTTGACATTCAGGATTCCATATGAGGGCTTGTCTTGTGACGCAGTTGGGTGAATTCC 598
consensus_144#1      -CAGTTAAGGTAGTAGGTCACCAGTGGTATTGAATCTTATGAACTACCNNGGGGGAT--- 263
                      *  ** *  *    * *  *   **        **** ***   *    ** * **   

consensus_144#0      CTAGTGTGTGTCCTATCCACTTCCAGCGCTTCTTCCTCCGCTGATGTGTAATTTATGCAT 658
consensus_144#1      --AAAGTATGA---ATNCNTTTATAAC-TGAATTTGATAGGTGGTGT------------- 304
                       *  ** **    ** *  **  * *     **     * ** ***             

consensus_144#0      CACTTATTAGTCAGTGAGTACAAAAATGCA 688
consensus_144#1      ------------------------------